Atomistry » Magnesium » PDB 7uo2-7uyc » 7uus
Atomistry »
  Magnesium »
    PDB 7uo2-7uyc »
      7uus »

Magnesium in PDB 7uus: The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk

Enzymatic activity of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk

All present enzymatic activity of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk:
1.12.99.6;

Other elements in 7uus:

The structure of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk also contains other interesting chemical elements:

Iron (Fe) 80 atoms
Nickel (Ni) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk (pdb code 7uus). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk, PDB code: 7uus:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 7uus

Go back to Magnesium Binding Sites List in 7uus
Magnesium binding site 1 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg603

b:9.8
occ:1.00
 O A:VAL462 2.0 8.8 1.0
OE2 A:GLU43 2.0 9.4 1.0
NE2 A:HIS516 2.1 9.0 1.0
CD A:GLU43 3.0 9.4 1.0
CD2 A:HIS516 3.1 9.0 1.0
CE1 A:HIS516 3.1 9.0 1.0
C A:VAL462 3.2 8.8 1.0
OE1 A:GLU43 3.3 9.4 1.0
N A:VAL462 3.7 8.8 1.0
CA A:VAL462 3.9 8.8 1.0
OE2 A:GLU303 3.9 14.0 1.0
OE1 A:GLU303 4.0 14.0 1.0
OE1 A:GLN461 4.1 10.1 1.0
ND1 A:HIS516 4.2 9.0 1.0
N A:VAL463 4.2 8.8 1.0
CG A:HIS516 4.2 9.0 1.0
NZ A:LYS341 4.3 12.5 1.0
CB A:VAL462 4.3 8.8 1.0
CG A:GLU43 4.3 9.4 1.0
CD A:GLU303 4.4 14.0 1.0
CA A:VAL463 4.5 8.8 1.0
CE A:LYS341 4.7 12.5 1.0
C A:GLN461 4.7 10.1 1.0
CD A:LYS341 4.8 12.5 1.0
CG2 A:VAL463 4.8 8.8 1.0

Magnesium binding site 2 out of 8 in 7uus

Go back to Magnesium Binding Sites List in 7uus
Magnesium binding site 2 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg603

b:9.8
occ:1.00
 O C:VAL462 2.0 8.8 1.0
OE2 C:GLU43 2.0 9.4 1.0
NE2 C:HIS516 2.1 9.0 1.0
CD C:GLU43 3.0 9.4 1.0
CD2 C:HIS516 3.1 9.0 1.0
CE1 C:HIS516 3.1 9.0 1.0
C C:VAL462 3.2 8.8 1.0
OE1 C:GLU43 3.3 9.4 1.0
N C:VAL462 3.7 8.8 1.0
CA C:VAL462 3.9 8.8 1.0
OE2 C:GLU303 3.9 14.0 1.0
OE1 C:GLU303 4.0 14.0 1.0
OE1 C:GLN461 4.1 10.1 1.0
ND1 C:HIS516 4.2 9.0 1.0
N C:VAL463 4.2 8.9 1.0
CG C:HIS516 4.2 9.0 1.0
NZ C:LYS341 4.2 12.5 1.0
CB C:VAL462 4.3 8.8 1.0
CG C:GLU43 4.3 9.4 1.0
CD C:GLU303 4.4 14.0 1.0
CA C:VAL463 4.5 8.9 1.0
CE C:LYS341 4.7 12.5 1.0
C C:GLN461 4.7 10.1 1.0
CD C:LYS341 4.8 12.5 1.0
CG2 C:VAL463 4.8 8.9 1.0

Magnesium binding site 3 out of 8 in 7uus

Go back to Magnesium Binding Sites List in 7uus
Magnesium binding site 3 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg603

b:9.8
occ:1.00
 O E:VAL462 2.0 8.8 1.0
OE2 E:GLU43 2.0 9.4 1.0
NE2 E:HIS516 2.1 9.0 1.0
CD E:GLU43 3.0 9.4 1.0
CD2 E:HIS516 3.1 9.0 1.0
CE1 E:HIS516 3.1 9.0 1.0
C E:VAL462 3.2 8.8 1.0
OE1 E:GLU43 3.3 9.4 1.0
N E:VAL462 3.7 8.8 1.0
CA E:VAL462 3.9 8.8 1.0
OE2 E:GLU303 3.9 14.0 1.0
OE1 E:GLU303 4.0 14.0 1.0
OE1 E:GLN461 4.1 10.1 1.0
ND1 E:HIS516 4.2 9.0 1.0
N E:VAL463 4.2 8.8 1.0
CG E:HIS516 4.2 9.0 1.0
NZ E:LYS341 4.3 12.5 1.0
CB E:VAL462 4.3 8.8 1.0
CG E:GLU43 4.3 9.4 1.0
CD E:GLU303 4.4 14.0 1.0
CA E:VAL463 4.5 8.8 1.0
CE E:LYS341 4.7 12.5 1.0
C E:GLN461 4.7 10.1 1.0
CD E:LYS341 4.8 12.5 1.0
CG2 E:VAL463 4.8 8.8 1.0

Magnesium binding site 4 out of 8 in 7uus

Go back to Magnesium Binding Sites List in 7uus
Magnesium binding site 4 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg603

b:9.8
occ:1.00
 O G:VAL462 2.0 8.8 1.0
OE2 G:GLU43 2.0 9.4 1.0
NE2 G:HIS516 2.1 9.0 1.0
CD G:GLU43 3.0 9.4 1.0
CD2 G:HIS516 3.1 9.0 1.0
CE1 G:HIS516 3.1 9.0 1.0
C G:VAL462 3.2 8.8 1.0
OE1 G:GLU43 3.3 9.4 1.0
N G:VAL462 3.7 8.8 1.0
CA G:VAL462 3.9 8.8 1.0
OE2 G:GLU303 3.9 14.0 1.0
OE1 G:GLU303 4.0 14.0 1.0
OE1 G:GLN461 4.1 10.1 1.0
ND1 G:HIS516 4.2 9.0 1.0
N G:VAL463 4.2 8.9 1.0
CG G:HIS516 4.2 9.0 1.0
NZ G:LYS341 4.2 12.5 1.0
CB G:VAL462 4.3 8.8 1.0
CG G:GLU43 4.3 9.4 1.0
CD G:GLU303 4.4 14.0 1.0
CA G:VAL463 4.5 8.9 1.0
CE G:LYS341 4.7 12.5 1.0
C G:GLN461 4.7 10.1 1.0
CD G:LYS341 4.8 12.5 1.0
CG2 G:VAL463 4.8 8.9 1.0

Magnesium binding site 5 out of 8 in 7uus

Go back to Magnesium Binding Sites List in 7uus
Magnesium binding site 5 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg603

b:9.8
occ:1.00
 O I:VAL462 2.0 8.8 1.0
OE2 I:GLU43 2.0 9.4 1.0
NE2 I:HIS516 2.1 9.0 1.0
CD I:GLU43 3.0 9.4 1.0
CD2 I:HIS516 3.1 9.0 1.0
CE1 I:HIS516 3.1 9.0 1.0
C I:VAL462 3.2 8.8 1.0
OE1 I:GLU43 3.3 9.4 1.0
N I:VAL462 3.7 8.8 1.0
CA I:VAL462 3.9 8.8 1.0
OE2 I:GLU303 3.9 14.0 1.0
OE1 I:GLU303 4.0 14.0 1.0
OE1 I:GLN461 4.1 10.1 1.0
ND1 I:HIS516 4.2 9.0 1.0
N I:VAL463 4.2 8.8 1.0
CG I:HIS516 4.2 9.0 1.0
NZ I:LYS341 4.3 12.5 1.0
CB I:VAL462 4.3 8.8 1.0
CG I:GLU43 4.3 9.4 1.0
CD I:GLU303 4.4 14.0 1.0
CA I:VAL463 4.5 8.8 1.0
CE I:LYS341 4.7 12.5 1.0
C I:GLN461 4.7 10.1 1.0
CD I:LYS341 4.8 12.5 1.0
CG2 I:VAL463 4.8 8.8 1.0

Magnesium binding site 6 out of 8 in 7uus

Go back to Magnesium Binding Sites List in 7uus
Magnesium binding site 6 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg603

b:9.8
occ:1.00
 O K:VAL462 2.0 8.8 1.0
OE2 K:GLU43 2.0 9.4 1.0
NE2 K:HIS516 2.1 9.0 1.0
CD K:GLU43 3.0 9.4 1.0
CD2 K:HIS516 3.1 9.0 1.0
CE1 K:HIS516 3.1 9.0 1.0
C K:VAL462 3.2 8.8 1.0
OE1 K:GLU43 3.3 9.4 1.0
N K:VAL462 3.7 8.8 1.0
CA K:VAL462 3.9 8.8 1.0
OE2 K:GLU303 3.9 14.0 1.0
OE1 K:GLU303 4.0 14.0 1.0
OE1 K:GLN461 4.1 10.1 1.0
ND1 K:HIS516 4.2 9.0 1.0
N K:VAL463 4.2 8.8 1.0
CG K:HIS516 4.2 9.0 1.0
NZ K:LYS341 4.3 12.5 1.0
CB K:VAL462 4.3 8.8 1.0
CG K:GLU43 4.3 9.4 1.0
CD K:GLU303 4.4 14.0 1.0
CA K:VAL463 4.5 8.8 1.0
CE K:LYS341 4.7 12.5 1.0
C K:GLN461 4.7 10.1 1.0
CD K:LYS341 4.8 12.5 1.0
CG2 K:VAL463 4.8 8.8 1.0

Magnesium binding site 7 out of 8 in 7uus

Go back to Magnesium Binding Sites List in 7uus
Magnesium binding site 7 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg603

b:9.8
occ:1.00
 O M:VAL462 2.0 8.8 1.0
OE2 M:GLU43 2.0 9.4 1.0
NE2 M:HIS516 2.1 9.0 1.0
CD M:GLU43 3.0 9.4 1.0
CD2 M:HIS516 3.1 9.0 1.0
CE1 M:HIS516 3.1 9.0 1.0
C M:VAL462 3.2 8.8 1.0
OE1 M:GLU43 3.3 9.4 1.0
N M:VAL462 3.7 8.8 1.0
CA M:VAL462 3.9 8.8 1.0
OE2 M:GLU303 3.9 14.0 1.0
OE1 M:GLU303 4.0 14.0 1.0
OE1 M:GLN461 4.1 10.1 1.0
ND1 M:HIS516 4.2 9.0 1.0
N M:VAL463 4.2 8.9 1.0
CG M:HIS516 4.2 9.0 1.0
NZ M:LYS341 4.2 12.5 1.0
CB M:VAL462 4.3 8.8 1.0
CG M:GLU43 4.3 9.4 1.0
CD M:GLU303 4.4 14.0 1.0
CA M:VAL463 4.5 8.9 1.0
CE M:LYS341 4.7 12.5 1.0
C M:GLN461 4.7 10.1 1.0
CD M:LYS341 4.8 12.5 1.0
CG2 M:VAL463 4.8 8.9 1.0

Magnesium binding site 8 out of 8 in 7uus

Go back to Magnesium Binding Sites List in 7uus
Magnesium binding site 8 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Mg603

b:9.8
occ:1.00
 O O:VAL462 2.0 8.8 1.0
OE2 O:GLU43 2.0 9.4 1.0
NE2 O:HIS516 2.1 9.0 1.0
CD O:GLU43 3.0 9.4 1.0
CD2 O:HIS516 3.1 9.0 1.0
CE1 O:HIS516 3.1 9.0 1.0
C O:VAL462 3.2 8.8 1.0
OE1 O:GLU43 3.3 9.4 1.0
N O:VAL462 3.7 8.8 1.0
CA O:VAL462 3.9 8.8 1.0
OE2 O:GLU303 3.9 14.0 1.0
OE1 O:GLU303 4.0 14.0 1.0
OE1 O:GLN461 4.1 10.1 1.0
ND1 O:HIS516 4.2 9.0 1.0
N O:VAL463 4.2 8.9 1.0
CG O:HIS516 4.2 9.0 1.0
NZ O:LYS341 4.2 12.5 1.0
CB O:VAL462 4.3 8.8 1.0
CG O:GLU43 4.3 9.4 1.0
CD O:GLU303 4.4 14.0 1.0
CA O:VAL463 4.5 8.9 1.0
CE O:LYS341 4.7 12.5 1.0
C O:GLN461 4.7 10.1 1.0
CD O:LYS341 4.8 12.5 1.0
CG2 O:VAL463 4.8 8.9 1.0

Reference:

R.Grinter, A.Kropp, H.Venugopal, M.Senger, J.Badley, P.Cabotaje, S.T.Stripp, C.K.Barlow, M.Belousoff, G.M.Cook, R.B.Schittenhelm, S.Khalid, G.Berggren, G.Greening. An Oxygen-Insensitive, Quinone-Transporting Hydrogenase Enables Bacteria to Extract Energy From Air To Be Published.
Page generated: Thu Oct 3 10:13:46 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy