Magnesium in PDB 7uuw: Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1

The binding sites of Magnesium atom in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1 (pdb code 7uuw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1, PDB code: 7uuw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:14.2 occ:1.00 O2B A:ADP401 2.4 19.1 1.0 PB A:ADP401 3.3 19.1 1.0 O3A A:ADP401 3.5 19.1 1.0 O3B A:ADP401 3.5 19.1 1.0 OE1 A:GLN137 3.6 19.0 1.0 OD2 A:ASP154 4.1 17.5 1.0 O A:SER155 4.1 16.9 1.0 CD A:GLN137 4.2 19.0 1.0 OD1 A:ASP154 4.3 17.5 1.0 NE2 A:GLN137 4.4 19.0 1.0 CG2 A:VAL339 4.5 18.9 1.0 CA A:GLY301 4.6 16.8 1.0 CG A:ASP154 4.6 17.5 1.0 O2A A:ADP401 4.7 19.1 1.0 PA A:ADP401 4.7 19.1 1.0 O1B A:ADP401 4.7 19.1 1.0 OD2 A:ASP11 4.7 22.5 1.0 CA A:GLY156 4.8 16.2 1.0 CB A:VAL339 5.0 18.9 1.0

Magnesium binding site 2 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:8.3 occ:1.00 O2B B:ADP401 2.4 11.9 1.0 PB B:ADP401 3.3 11.9 1.0 O3A B:ADP401 3.4 11.9 1.0 O3B B:ADP401 3.5 11.9 1.0 OE1 B:GLN137 3.7 10.7 1.0 OD2 B:ASP154 4.1 10.1 1.0 O B:SER155 4.1 9.9 1.0 CD B:GLN137 4.3 10.7 1.0 OD1 B:ASP154 4.3 10.1 1.0 NE2 B:GLN137 4.4 10.7 1.0 CG2 B:VAL339 4.5 11.3 1.0 CA B:GLY301 4.5 10.1 1.0 O2A B:ADP401 4.6 11.9 1.0 CG B:ASP154 4.6 10.1 1.0 PA B:ADP401 4.7 11.9 1.0 O1B B:ADP401 4.7 11.9 1.0 OD2 B:ASP11 4.7 13.7 1.0 CA B:GLY156 4.8 9.7 1.0 CB B:VAL339 5.0 11.3 1.0

Magnesium binding site 3 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:13.5 occ:1.00 O2B C:ADP401 2.3 10.0 1.0 PB C:ADP401 3.2 10.0 1.0 O3A C:ADP401 3.4 10.0 1.0 O3B C:ADP401 3.4 10.0 1.0 OE1 C:GLN137 3.7 9.9 1.0 OD2 C:ASP154 4.1 10.3 1.0 O C:SER155 4.2 11.0 1.0 CD C:GLN137 4.2 9.9 1.0 NE2 C:GLN137 4.3 9.9 1.0 OD1 C:ASP154 4.4 10.3 1.0 CG2 C:VAL339 4.5 9.3 1.0 CA C:GLY301 4.6 9.6 1.0 O2A C:ADP401 4.6 10.0 1.0 O1B C:ADP401 4.7 10.0 1.0 PA C:ADP401 4.7 10.0 1.0 CG C:ASP154 4.7 10.3 1.0 OD2 C:ASP11 4.7 10.9 1.0 CA C:GLY156 4.8 11.0 1.0 CB C:VAL339 5.0 9.3 1.0

Magnesium binding site 4 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:13.5 occ:1.00 O2B D:ADP401 2.5 9.0 1.0 PB D:ADP401 3.3 9.0 1.0 O3A D:ADP401 3.4 9.0 1.0 O3B D:ADP401 3.5 9.0 1.0 OE1 D:GLN137 3.8 9.3 1.0 O D:SER155 4.0 8.3 1.0 OD2 D:ASP154 4.0 8.7 1.0 OD1 D:ASP154 4.2 8.7 1.0 CA D:GLY301 4.4 8.1 1.0 CD D:GLN137 4.4 9.3 1.0 CG2 D:VAL339 4.5 8.5 1.0 NE2 D:GLN137 4.5 9.3 1.0 O2A D:ADP401 4.5 9.0 1.0 CG D:ASP154 4.6 8.7 1.0 PA D:ADP401 4.6 9.0 1.0 O1B D:ADP401 4.8 9.0 1.0 CA D:GLY156 4.8 8.1 1.0 OD2 D:ASP11 4.8 10.8 1.0 CB D:VAL339 4.9 8.5 1.0

Magnesium binding site 5 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:8.8 occ:1.00 O2B E:ADP401 2.4 10.0 1.0 PB E:ADP401 3.2 10.0 1.0 O3B E:ADP401 3.3 10.0 1.0 O3A E:ADP401 3.3 10.0 1.0 OE1 E:GLN137 3.9 10.1 1.0 O E:SER155 4.3 8.6 1.0 OD2 E:ASP154 4.3 9.0 1.0 CD E:GLN137 4.4 10.1 1.0 O2A E:ADP401 4.4 10.0 1.0 NE2 E:GLN137 4.5 10.1 1.0 OD1 E:ASP154 4.5 9.0 1.0 PA E:ADP401 4.5 10.0 1.0 CG2 E:VAL339 4.5 9.0 1.0 CA E:GLY301 4.6 9.0 1.0 OD2 E:ASP11 4.6 11.8 1.0 O1B E:ADP401 4.6 10.0 1.0 CG E:ASP154 4.8 9.0 1.0 CA E:GLY156 4.9 8.4 1.0 CB E:VAL339 4.9 9.0 1.0

Magnesium binding site 6 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By the Actin Binding Domain of Alpha-Catenin Ortholog, HMP1 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:7.6 occ:1.00 O2B F:ADP401 2.3 10.9 1.0 PB F:ADP401 3.2 10.9 1.0 O3B F:ADP401 3.4 10.9 1.0 O3A F:ADP401 3.4 10.9 1.0 OE1 F:GLN137 3.6 9.9 1.0 OD2 F:ASP154 4.1 8.5 1.0 O F:SER155 4.2 9.1 1.0 CD F:GLN137 4.2 9.9 1.0 NE2 F:GLN137 4.3 9.9 1.0 OD1 F:ASP154 4.5 8.5 1.0 O1B F:ADP401 4.6 10.9 1.0 CG2 F:VAL339 4.6 9.2 1.0 O2A F:ADP401 4.7 10.9 1.0 PA F:ADP401 4.7 10.9 1.0 CA F:GLY301 4.7 9.2 1.0 OD2 F:ASP11 4.7 11.9 1.0 CG F:ASP154 4.7 8.5 1.0 CA F:GLY156 4.8 9.3 1.0

E.S.Rangarajan, E.W.Smith, T.Izard. The Nematode HMP1/ Alpha-Catenin Has An Extended Alpha-Helix When Bound to Actin Filaments. J.Biol.Chem. 02817 2022.
ISSN: ESSN 1083-351X
PubMed: 36539037
DOI: 10.1016/J.JBC.2022.102817