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Magnesium in PDB 7uv7: Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Scaffold Duplex (21MER) Containing the Cognate REPE54 Sequence and An Insert Duplex (10MER) with Guest Tamra- Labelled Thymine and T-A Rich Sequence.

Protein crystallography data

The structure of Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Scaffold Duplex (21MER) Containing the Cognate REPE54 Sequence and An Insert Duplex (10MER) with Guest Tamra- Labelled Thymine and T-A Rich Sequence., PDB code: 7uv7 was solved by A.R.Orun, C.D.Snow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.85 / 3.02
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 73.493, 131.392, 132.464, 90, 90, 90
R / Rfree (%) 23.1 / 26.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Scaffold Duplex (21MER) Containing the Cognate REPE54 Sequence and An Insert Duplex (10MER) with Guest Tamra- Labelled Thymine and T-A Rich Sequence. (pdb code 7uv7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Scaffold Duplex (21MER) Containing the Cognate REPE54 Sequence and An Insert Duplex (10MER) with Guest Tamra- Labelled Thymine and T-A Rich Sequence., PDB code: 7uv7:

Magnesium binding site 1 out of 1 in 7uv7

Go back to Magnesium Binding Sites List in 7uv7
Magnesium binding site 1 out of 1 in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Scaffold Duplex (21MER) Containing the Cognate REPE54 Sequence and An Insert Duplex (10MER) with Guest Tamra- Labelled Thymine and T-A Rich Sequence.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Scaffold Duplex (21MER) Containing the Cognate REPE54 Sequence and An Insert Duplex (10MER) with Guest Tamra- Labelled Thymine and T-A Rich Sequence. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:117.3
occ:1.00
OE2 C:GLU77 1.7 201.4 1.0
O A:HOH101 2.0 128.9 1.0
O C:HOH401 2.0 64.0 1.0
OD1 C:ASP81 2.3 131.6 1.0
O C:HOH402 2.4 96.5 1.0
CD C:GLU77 2.5 120.1 1.0
OD2 C:ASP81 2.6 124.9 1.0
CG C:GLU77 2.7 106.3 1.0
CG C:ASP81 2.8 106.9 1.0
O C:HOH404 2.8 89.7 1.0
OE1 C:GLU77 3.7 106.3 1.0
OP2 A:DG14 3.9 137.7 1.0
O C:GLU77 3.9 140.6 1.0
CB C:GLU77 4.2 64.4 1.0
CB C:ASP81 4.3 53.4 1.0
N7 A:DG14 4.5 130.3 1.0
C C:GLU77 4.5 150.4 1.0
NH2 C:ARG33 4.6 78.0 1.0
CA C:GLU77 4.7 105.9 1.0
OD2 C:ASP34 4.7 88.6 1.0
C8 A:DG14 4.8 114.7 1.0
CD2 C:LEU73 4.9 125.2 1.0
CA C:ASP81 4.9 68.9 1.0
N C:ASP81 5.0 55.5 1.0
NZ C:LYS80 5.0 165.4 1.0

Reference:

A.R.Orun, E.T.Shields, S.Dmytriw, A.Vajapayajula, C.D.Snow. Designed Crystalline Assemblies of Protein and Dna Enable Site-Specific Installation of A Guest Protein, Dna, and Small Molecule. To Be Published.
Page generated: Thu Oct 3 10:14:51 2024

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