Magnesium in PDB 7uxc: Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion
Enzymatic activity of Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion
All present enzymatic activity of Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion:
2.7.11.1;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion
(pdb code 7uxc). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the
Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion, PDB code: 7uxc:
Jump to Magnesium binding site number:
1;
2;
Magnesium binding site 1 out
of 2 in 7uxc
Go back to
Magnesium Binding Sites List in 7uxc
Magnesium binding site 1 out
of 2 in the Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:41.9
occ:1.00
|
O2B
|
D:GTP401
|
2.3
|
40.7
|
1.0
|
CB
|
D:THR21
|
2.5
|
31.1
|
1.0
|
O3G
|
D:GTP401
|
2.6
|
40.7
|
1.0
|
H
|
D:THR21
|
3.1
|
31.1
|
1.0
|
H
|
D:THR42
|
3.1
|
39.8
|
1.0
|
CB
|
D:THR42
|
3.4
|
39.8
|
1.0
|
OD2
|
D:ASP62
|
3.4
|
35.8
|
1.0
|
CA
|
D:THR21
|
3.6
|
31.1
|
1.0
|
N
|
D:THR21
|
3.6
|
31.1
|
1.0
|
OD1
|
D:ASP62
|
3.7
|
35.8
|
1.0
|
PB
|
D:GTP401
|
3.7
|
40.7
|
1.0
|
O2A
|
D:GTP401
|
3.7
|
40.7
|
1.0
|
PG
|
D:GTP401
|
3.7
|
40.7
|
1.0
|
N
|
D:THR42
|
3.7
|
39.8
|
1.0
|
HG3
|
D:LYS20
|
3.8
|
37.5
|
1.0
|
HG2
|
D:LYS20
|
3.9
|
37.5
|
1.0
|
CG
|
D:ASP62
|
3.9
|
35.8
|
1.0
|
HA
|
D:THR21
|
4.0
|
31.1
|
1.0
|
O1G
|
D:GTP401
|
4.0
|
40.7
|
1.0
|
CA
|
D:THR42
|
4.1
|
39.8
|
1.0
|
O3B
|
D:GTP401
|
4.1
|
40.7
|
1.0
|
CG
|
D:LYS20
|
4.3
|
37.5
|
1.0
|
HA
|
D:ALA41
|
4.4
|
41.7
|
1.0
|
HA
|
D:THR42
|
4.4
|
39.8
|
1.0
|
O
|
D:GLY40
|
4.4
|
38.3
|
1.0
|
PA
|
D:GTP401
|
4.6
|
40.7
|
1.0
|
HD2
|
D:LYS20
|
4.6
|
37.5
|
1.0
|
O3A
|
D:GTP401
|
4.7
|
40.7
|
1.0
|
O1B
|
D:GTP401
|
4.7
|
40.7
|
1.0
|
O1A
|
D:GTP401
|
4.7
|
40.7
|
1.0
|
HH21
|
D:ARG24
|
4.7
|
25.7
|
1.0
|
HZ3
|
D:LYS20
|
4.7
|
37.5
|
1.0
|
HA2
|
D:GLY64
|
4.7
|
43.2
|
1.0
|
C
|
D:ALA41
|
4.8
|
41.7
|
1.0
|
C
|
D:THR21
|
4.8
|
31.1
|
1.0
|
C
|
D:LYS20
|
4.9
|
37.5
|
1.0
|
HD13
|
D:LEU39
|
5.0
|
30.0
|
1.0
|
H
|
D:SER22
|
5.0
|
34.4
|
1.0
|
|
Magnesium binding site 2 out
of 2 in 7uxc
Go back to
Magnesium Binding Sites List in 7uxc
Magnesium binding site 2 out
of 2 in the Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg402
b:57.6
occ:1.00
|
HG23
|
K:THR42
|
1.8
|
64.2
|
1.0
|
O3G
|
K:GTP401
|
2.0
|
75.3
|
1.0
|
O2B
|
K:GTP401
|
2.0
|
75.3
|
1.0
|
HG21
|
K:THR42
|
2.3
|
64.2
|
1.0
|
CG2
|
K:THR42
|
2.4
|
64.2
|
1.0
|
CB
|
K:THR21
|
2.5
|
70.2
|
1.0
|
HG1
|
K:THR42
|
2.7
|
64.2
|
1.0
|
OG1
|
K:THR42
|
2.8
|
64.2
|
1.0
|
H
|
K:THR42
|
3.0
|
64.2
|
1.0
|
PG
|
K:GTP401
|
3.0
|
75.3
|
1.0
|
H
|
K:THR21
|
3.1
|
70.2
|
1.0
|
CB
|
K:THR42
|
3.2
|
64.2
|
1.0
|
PB
|
K:GTP401
|
3.2
|
75.3
|
1.0
|
HG22
|
K:THR42
|
3.2
|
64.2
|
1.0
|
O1G
|
K:GTP401
|
3.3
|
75.3
|
1.0
|
O2A
|
K:GTP401
|
3.4
|
75.3
|
1.0
|
O3B
|
K:GTP401
|
3.4
|
75.3
|
1.0
|
CA
|
K:THR21
|
3.6
|
70.2
|
1.0
|
OD2
|
K:ASP62
|
3.6
|
68.8
|
1.0
|
N
|
K:THR21
|
3.7
|
70.2
|
1.0
|
HG2
|
K:LYS20
|
3.7
|
75.0
|
1.0
|
N
|
K:THR42
|
3.7
|
64.2
|
1.0
|
HB
|
K:THR42
|
3.9
|
64.2
|
1.0
|
HA
|
K:THR21
|
4.0
|
70.2
|
1.0
|
OD1
|
K:ASP62
|
4.0
|
68.8
|
1.0
|
CA
|
K:THR42
|
4.0
|
64.2
|
1.0
|
O
|
K:GLY40
|
4.1
|
60.0
|
1.0
|
O3A
|
K:GTP401
|
4.2
|
75.3
|
1.0
|
PA
|
K:GTP401
|
4.2
|
75.3
|
1.0
|
CG
|
K:ASP62
|
4.2
|
68.8
|
1.0
|
HA
|
K:ALA41
|
4.3
|
56.1
|
1.0
|
O1B
|
K:GTP401
|
4.3
|
75.3
|
1.0
|
O2G
|
K:GTP401
|
4.3
|
75.3
|
1.0
|
HZ3
|
K:LYS20
|
4.3
|
75.0
|
1.0
|
HG3
|
K:LYS20
|
4.4
|
75.0
|
1.0
|
O1A
|
K:GTP401
|
4.4
|
75.3
|
1.0
|
CG
|
K:LYS20
|
4.5
|
75.0
|
1.0
|
HA
|
K:THR42
|
4.6
|
64.2
|
1.0
|
HH21
|
K:ARG24
|
4.7
|
73.1
|
1.0
|
HD2
|
K:LYS20
|
4.7
|
75.0
|
1.0
|
C
|
K:ALA41
|
4.8
|
56.1
|
1.0
|
HA2
|
K:GLY64
|
4.8
|
72.5
|
1.0
|
C
|
K:THR21
|
4.8
|
70.2
|
1.0
|
HZ2
|
K:LYS20
|
4.9
|
75.0
|
1.0
|
C
|
K:LYS20
|
4.9
|
75.0
|
1.0
|
CA
|
K:ALA41
|
4.9
|
56.1
|
1.0
|
H
|
K:SER22
|
5.0
|
76.1
|
1.0
|
|
Reference:
Z.Cui,
J.Hurley.
Structural Basis For MTORC1-Dependent Regulation of the Lysosomal and Autophagic Transcription Factor Tfeb To Be Published.
Page generated: Thu Oct 3 10:16:29 2024
|