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Magnesium in PDB 7uxc: Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion

Enzymatic activity of Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion

All present enzymatic activity of Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion:
2.7.11.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion (pdb code 7uxc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion, PDB code: 7uxc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7uxc

Go back to Magnesium Binding Sites List in 7uxc
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:41.9
occ:1.00
O2B D:GTP401 2.3 40.7 1.0
CB D:THR21 2.5 31.1 1.0
O3G D:GTP401 2.6 40.7 1.0
H D:THR21 3.1 31.1 1.0
H D:THR42 3.1 39.8 1.0
CB D:THR42 3.4 39.8 1.0
OD2 D:ASP62 3.4 35.8 1.0
CA D:THR21 3.6 31.1 1.0
N D:THR21 3.6 31.1 1.0
OD1 D:ASP62 3.7 35.8 1.0
PB D:GTP401 3.7 40.7 1.0
O2A D:GTP401 3.7 40.7 1.0
PG D:GTP401 3.7 40.7 1.0
N D:THR42 3.7 39.8 1.0
HG3 D:LYS20 3.8 37.5 1.0
HG2 D:LYS20 3.9 37.5 1.0
CG D:ASP62 3.9 35.8 1.0
HA D:THR21 4.0 31.1 1.0
O1G D:GTP401 4.0 40.7 1.0
CA D:THR42 4.1 39.8 1.0
O3B D:GTP401 4.1 40.7 1.0
CG D:LYS20 4.3 37.5 1.0
HA D:ALA41 4.4 41.7 1.0
HA D:THR42 4.4 39.8 1.0
O D:GLY40 4.4 38.3 1.0
PA D:GTP401 4.6 40.7 1.0
HD2 D:LYS20 4.6 37.5 1.0
O3A D:GTP401 4.7 40.7 1.0
O1B D:GTP401 4.7 40.7 1.0
O1A D:GTP401 4.7 40.7 1.0
HH21 D:ARG24 4.7 25.7 1.0
HZ3 D:LYS20 4.7 37.5 1.0
HA2 D:GLY64 4.7 43.2 1.0
C D:ALA41 4.8 41.7 1.0
C D:THR21 4.8 31.1 1.0
C D:LYS20 4.9 37.5 1.0
HD13 D:LEU39 5.0 30.0 1.0
H D:SER22 5.0 34.4 1.0

Magnesium binding site 2 out of 2 in 7uxc

Go back to Magnesium Binding Sites List in 7uxc
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the MTORC1-Tfeb-Rag-Ragulator Complex with Symmetry Expansion within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg402

b:57.6
occ:1.00
HG23 K:THR42 1.8 64.2 1.0
O3G K:GTP401 2.0 75.3 1.0
O2B K:GTP401 2.0 75.3 1.0
HG21 K:THR42 2.3 64.2 1.0
CG2 K:THR42 2.4 64.2 1.0
CB K:THR21 2.5 70.2 1.0
HG1 K:THR42 2.7 64.2 1.0
OG1 K:THR42 2.8 64.2 1.0
H K:THR42 3.0 64.2 1.0
PG K:GTP401 3.0 75.3 1.0
H K:THR21 3.1 70.2 1.0
CB K:THR42 3.2 64.2 1.0
PB K:GTP401 3.2 75.3 1.0
HG22 K:THR42 3.2 64.2 1.0
O1G K:GTP401 3.3 75.3 1.0
O2A K:GTP401 3.4 75.3 1.0
O3B K:GTP401 3.4 75.3 1.0
CA K:THR21 3.6 70.2 1.0
OD2 K:ASP62 3.6 68.8 1.0
N K:THR21 3.7 70.2 1.0
HG2 K:LYS20 3.7 75.0 1.0
N K:THR42 3.7 64.2 1.0
HB K:THR42 3.9 64.2 1.0
HA K:THR21 4.0 70.2 1.0
OD1 K:ASP62 4.0 68.8 1.0
CA K:THR42 4.0 64.2 1.0
O K:GLY40 4.1 60.0 1.0
O3A K:GTP401 4.2 75.3 1.0
PA K:GTP401 4.2 75.3 1.0
CG K:ASP62 4.2 68.8 1.0
HA K:ALA41 4.3 56.1 1.0
O1B K:GTP401 4.3 75.3 1.0
O2G K:GTP401 4.3 75.3 1.0
HZ3 K:LYS20 4.3 75.0 1.0
HG3 K:LYS20 4.4 75.0 1.0
O1A K:GTP401 4.4 75.3 1.0
CG K:LYS20 4.5 75.0 1.0
HA K:THR42 4.6 64.2 1.0
HH21 K:ARG24 4.7 73.1 1.0
HD2 K:LYS20 4.7 75.0 1.0
C K:ALA41 4.8 56.1 1.0
HA2 K:GLY64 4.8 72.5 1.0
C K:THR21 4.8 70.2 1.0
HZ2 K:LYS20 4.9 75.0 1.0
C K:LYS20 4.9 75.0 1.0
CA K:ALA41 4.9 56.1 1.0
H K:SER22 5.0 76.1 1.0

Reference:

Z.Cui, J.Hurley. Structural Basis For MTORC1-Dependent Regulation of the Lysosomal and Autophagic Transcription Factor Tfeb To Be Published.
Page generated: Thu Oct 3 10:16:29 2024

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