Magnesium in PDB 7uxf: Cryogenic Electron Microscopy 3D Map of F-Actin
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Cryogenic Electron Microscopy 3D Map of F-Actin
(pdb code 7uxf). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Cryogenic Electron Microscopy 3D Map of F-Actin, PDB code: 7uxf:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 7uxf
Go back to
Magnesium Binding Sites List in 7uxf
Magnesium binding site 1 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:39.0
occ:1.00
|
O1B
|
A:ADP401
|
2.0
|
34.8
|
1.0
|
PB
|
A:ADP401
|
3.4
|
34.8
|
1.0
|
OE1
|
A:GLN137
|
3.9
|
39.0
|
1.0
|
O2B
|
A:ADP401
|
3.9
|
34.8
|
1.0
|
NE2
|
A:GLN137
|
4.0
|
39.0
|
1.0
|
OD1
|
A:ASP154
|
4.0
|
34.8
|
1.0
|
CD
|
A:GLN137
|
4.1
|
39.0
|
1.0
|
OD2
|
A:ASP11
|
4.1
|
42.7
|
1.0
|
O3A
|
A:ADP401
|
4.2
|
34.8
|
1.0
|
O1A
|
A:ADP401
|
4.3
|
34.8
|
1.0
|
OD1
|
A:ASP11
|
4.3
|
42.7
|
1.0
|
CA
|
A:GLY13
|
4.4
|
36.1
|
1.0
|
O3B
|
A:ADP401
|
4.5
|
34.8
|
1.0
|
NZ
|
A:LYS18
|
4.5
|
39.6
|
1.0
|
CG
|
A:ASP11
|
4.6
|
42.7
|
1.0
|
OD2
|
A:ASP154
|
4.7
|
34.8
|
1.0
|
CG2
|
A:VAL339
|
4.8
|
40.8
|
1.0
|
CG
|
A:ASP154
|
4.8
|
34.8
|
1.0
|
PA
|
A:ADP401
|
4.8
|
34.8
|
1.0
|
CA
|
A:GLY156
|
4.8
|
30.4
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 7uxf
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Magnesium Binding Sites List in 7uxf
Magnesium binding site 2 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:38.3
occ:1.00
|
O1B
|
B:ADP401
|
2.0
|
30.7
|
1.0
|
PB
|
B:ADP401
|
3.4
|
30.7
|
1.0
|
O2B
|
B:ADP401
|
3.9
|
30.7
|
1.0
|
OE1
|
B:GLN137
|
3.9
|
33.0
|
1.0
|
OD1
|
B:ASP154
|
4.0
|
29.6
|
1.0
|
NE2
|
B:GLN137
|
4.1
|
33.0
|
1.0
|
OD2
|
B:ASP11
|
4.1
|
37.4
|
1.0
|
CD
|
B:GLN137
|
4.1
|
33.0
|
1.0
|
O3A
|
B:ADP401
|
4.2
|
30.7
|
1.0
|
O1A
|
B:ADP401
|
4.2
|
30.7
|
1.0
|
OD1
|
B:ASP11
|
4.4
|
37.4
|
1.0
|
O
|
B:HOH502
|
4.5
|
31.8
|
1.0
|
NZ
|
B:LYS18
|
4.5
|
34.3
|
1.0
|
O3B
|
B:ADP401
|
4.5
|
30.7
|
1.0
|
CA
|
B:GLY13
|
4.5
|
32.0
|
1.0
|
CG
|
B:ASP11
|
4.6
|
37.4
|
1.0
|
OD2
|
B:ASP154
|
4.7
|
29.6
|
1.0
|
CG2
|
B:VAL339
|
4.7
|
34.1
|
1.0
|
PA
|
B:ADP401
|
4.7
|
30.7
|
1.0
|
CG
|
B:ASP154
|
4.8
|
29.6
|
1.0
|
CA
|
B:GLY156
|
4.8
|
26.2
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 7uxf
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Magnesium Binding Sites List in 7uxf
Magnesium binding site 3 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:35.1
occ:1.00
|
O1B
|
C:ADP401
|
2.0
|
38.0
|
1.0
|
PB
|
C:ADP401
|
3.4
|
38.0
|
1.0
|
OE1
|
C:GLN137
|
3.9
|
32.2
|
1.0
|
O2B
|
C:ADP401
|
4.0
|
38.0
|
1.0
|
NE2
|
C:GLN137
|
4.0
|
32.2
|
1.0
|
OD2
|
C:ASP11
|
4.0
|
36.0
|
1.0
|
OD1
|
C:ASP154
|
4.0
|
29.8
|
1.0
|
CD
|
C:GLN137
|
4.1
|
32.2
|
1.0
|
O3A
|
C:ADP401
|
4.2
|
38.0
|
1.0
|
O1A
|
C:ADP401
|
4.2
|
38.0
|
1.0
|
OD1
|
C:ASP11
|
4.3
|
36.0
|
1.0
|
NZ
|
C:LYS18
|
4.4
|
33.3
|
1.0
|
CA
|
C:GLY13
|
4.5
|
33.0
|
1.0
|
O3B
|
C:ADP401
|
4.5
|
38.0
|
1.0
|
CG
|
C:ASP11
|
4.6
|
36.0
|
1.0
|
OD2
|
C:ASP154
|
4.7
|
29.8
|
1.0
|
CG2
|
C:VAL339
|
4.7
|
32.4
|
1.0
|
PA
|
C:ADP401
|
4.8
|
38.0
|
1.0
|
CG
|
C:ASP154
|
4.8
|
29.8
|
1.0
|
CA
|
C:GLY156
|
4.8
|
29.4
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 7uxf
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Magnesium Binding Sites List in 7uxf
Magnesium binding site 4 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:37.7
occ:1.00
|
O1B
|
D:ADP401
|
2.0
|
38.0
|
1.0
|
PB
|
D:ADP401
|
3.4
|
38.0
|
1.0
|
OD1
|
D:ASP154
|
3.7
|
29.6
|
1.0
|
OE1
|
D:GLN137
|
3.9
|
32.0
|
1.0
|
O2B
|
D:ADP401
|
4.0
|
38.0
|
1.0
|
NE2
|
D:GLN137
|
4.0
|
32.0
|
1.0
|
OD2
|
D:ASP11
|
4.1
|
35.5
|
1.0
|
CD
|
D:GLN137
|
4.1
|
32.0
|
1.0
|
O3A
|
D:ADP401
|
4.2
|
38.0
|
1.0
|
O1A
|
D:ADP401
|
4.2
|
38.0
|
1.0
|
OD1
|
D:ASP11
|
4.3
|
35.5
|
1.0
|
NZ
|
D:LYS18
|
4.5
|
32.5
|
1.0
|
O
|
D:HOH519
|
4.5
|
32.7
|
1.0
|
CA
|
D:GLY13
|
4.5
|
32.6
|
1.0
|
O3B
|
D:ADP401
|
4.5
|
38.0
|
1.0
|
OD2
|
D:ASP154
|
4.5
|
29.6
|
1.0
|
CG
|
D:ASP154
|
4.6
|
29.6
|
1.0
|
CG
|
D:ASP11
|
4.6
|
35.5
|
1.0
|
CG2
|
D:VAL339
|
4.7
|
33.2
|
1.0
|
O
|
D:HOH507
|
4.7
|
25.6
|
1.0
|
PA
|
D:ADP401
|
4.8
|
38.0
|
1.0
|
CA
|
D:GLY156
|
4.8
|
28.7
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 7uxf
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Magnesium Binding Sites List in 7uxf
Magnesium binding site 5 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg402
b:35.0
occ:1.00
|
O1B
|
E:ADP401
|
2.1
|
30.5
|
1.0
|
PB
|
E:ADP401
|
3.5
|
30.5
|
1.0
|
OE1
|
E:GLN137
|
3.9
|
34.1
|
1.0
|
OD1
|
E:ASP154
|
3.9
|
28.7
|
1.0
|
O2B
|
E:ADP401
|
4.0
|
30.5
|
1.0
|
NE2
|
E:GLN137
|
4.0
|
34.1
|
1.0
|
CD
|
E:GLN137
|
4.1
|
34.1
|
1.0
|
OD2
|
E:ASP11
|
4.1
|
38.3
|
1.0
|
O3A
|
E:ADP401
|
4.2
|
30.5
|
1.0
|
O1A
|
E:ADP401
|
4.2
|
30.5
|
1.0
|
OD1
|
E:ASP11
|
4.4
|
38.3
|
1.0
|
NZ
|
E:LYS18
|
4.5
|
36.3
|
1.0
|
CA
|
E:GLY13
|
4.6
|
33.0
|
1.0
|
O3B
|
E:ADP401
|
4.6
|
30.5
|
1.0
|
OD2
|
E:ASP154
|
4.6
|
28.7
|
1.0
|
O
|
E:HOH506
|
4.7
|
32.1
|
1.0
|
CG
|
E:ASP11
|
4.7
|
38.3
|
1.0
|
CG2
|
E:VAL339
|
4.7
|
35.9
|
1.0
|
CG
|
E:ASP154
|
4.7
|
28.7
|
1.0
|
PA
|
E:ADP401
|
4.8
|
30.5
|
1.0
|
CA
|
E:GLY156
|
4.8
|
26.4
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 7uxf
Go back to
Magnesium Binding Sites List in 7uxf
Magnesium binding site 6 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg402
b:42.6
occ:1.00
|
O1B
|
F:ADP401
|
2.0
|
37.7
|
1.0
|
PB
|
F:ADP401
|
3.4
|
37.7
|
1.0
|
OD1
|
F:ASP154
|
3.9
|
35.5
|
1.0
|
OE1
|
F:GLN137
|
3.9
|
39.0
|
1.0
|
O2B
|
F:ADP401
|
4.0
|
37.7
|
1.0
|
NE2
|
F:GLN137
|
4.1
|
39.0
|
1.0
|
CD
|
F:GLN137
|
4.1
|
39.0
|
1.0
|
OD2
|
F:ASP11
|
4.1
|
46.0
|
1.0
|
O3A
|
F:ADP401
|
4.2
|
37.7
|
1.0
|
O1A
|
F:ADP401
|
4.2
|
37.7
|
1.0
|
O
|
F:HOH504
|
4.4
|
38.8
|
1.0
|
OD1
|
F:ASP11
|
4.4
|
46.0
|
1.0
|
O3B
|
F:ADP401
|
4.5
|
37.7
|
1.0
|
NZ
|
F:LYS18
|
4.5
|
45.1
|
1.0
|
CA
|
F:GLY13
|
4.5
|
42.1
|
1.0
|
OD2
|
F:ASP154
|
4.7
|
35.5
|
1.0
|
CG
|
F:ASP11
|
4.7
|
46.0
|
1.0
|
CA
|
F:GLY156
|
4.7
|
36.0
|
1.0
|
CG2
|
F:VAL339
|
4.7
|
41.6
|
1.0
|
CG
|
F:ASP154
|
4.7
|
35.5
|
1.0
|
PA
|
F:ADP401
|
4.7
|
37.7
|
1.0
|
|
Reference:
E.S.Rangarajan,
E.W.Smith,
T.Izard.
Distinct Inter-Domain Interactions of Dimeric Versus Monomeric Alpha-Catenin Link the Membrane or Junctions to Filaments To Be Published.
Page generated: Thu Oct 3 10:16:20 2024
|