Magnesium in PDB 7uxf: Cryogenic Electron Microscopy 3D Map of F-Actin

The binding sites of Magnesium atom in the Cryogenic Electron Microscopy 3D Map of F-Actin (pdb code 7uxf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryogenic Electron Microscopy 3D Map of F-Actin, PDB code: 7uxf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:39.0 occ:1.00 O1B A:ADP401 2.0 34.8 1.0 PB A:ADP401 3.4 34.8 1.0 OE1 A:GLN137 3.9 39.0 1.0 O2B A:ADP401 3.9 34.8 1.0 NE2 A:GLN137 4.0 39.0 1.0 OD1 A:ASP154 4.0 34.8 1.0 CD A:GLN137 4.1 39.0 1.0 OD2 A:ASP11 4.1 42.7 1.0 O3A A:ADP401 4.2 34.8 1.0 O1A A:ADP401 4.3 34.8 1.0 OD1 A:ASP11 4.3 42.7 1.0 CA A:GLY13 4.4 36.1 1.0 O3B A:ADP401 4.5 34.8 1.0 NZ A:LYS18 4.5 39.6 1.0 CG A:ASP11 4.6 42.7 1.0 OD2 A:ASP154 4.7 34.8 1.0 CG2 A:VAL339 4.8 40.8 1.0 CG A:ASP154 4.8 34.8 1.0 PA A:ADP401 4.8 34.8 1.0 CA A:GLY156 4.8 30.4 1.0

Magnesium binding site 2 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:38.3 occ:1.00 O1B B:ADP401 2.0 30.7 1.0 PB B:ADP401 3.4 30.7 1.0 O2B B:ADP401 3.9 30.7 1.0 OE1 B:GLN137 3.9 33.0 1.0 OD1 B:ASP154 4.0 29.6 1.0 NE2 B:GLN137 4.1 33.0 1.0 OD2 B:ASP11 4.1 37.4 1.0 CD B:GLN137 4.1 33.0 1.0 O3A B:ADP401 4.2 30.7 1.0 O1A B:ADP401 4.2 30.7 1.0 OD1 B:ASP11 4.4 37.4 1.0 O B:HOH502 4.5 31.8 1.0 NZ B:LYS18 4.5 34.3 1.0 O3B B:ADP401 4.5 30.7 1.0 CA B:GLY13 4.5 32.0 1.0 CG B:ASP11 4.6 37.4 1.0 OD2 B:ASP154 4.7 29.6 1.0 CG2 B:VAL339 4.7 34.1 1.0 PA B:ADP401 4.7 30.7 1.0 CG B:ASP154 4.8 29.6 1.0 CA B:GLY156 4.8 26.2 1.0

Magnesium binding site 3 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:35.1 occ:1.00 O1B C:ADP401 2.0 38.0 1.0 PB C:ADP401 3.4 38.0 1.0 OE1 C:GLN137 3.9 32.2 1.0 O2B C:ADP401 4.0 38.0 1.0 NE2 C:GLN137 4.0 32.2 1.0 OD2 C:ASP11 4.0 36.0 1.0 OD1 C:ASP154 4.0 29.8 1.0 CD C:GLN137 4.1 32.2 1.0 O3A C:ADP401 4.2 38.0 1.0 O1A C:ADP401 4.2 38.0 1.0 OD1 C:ASP11 4.3 36.0 1.0 NZ C:LYS18 4.4 33.3 1.0 CA C:GLY13 4.5 33.0 1.0 O3B C:ADP401 4.5 38.0 1.0 CG C:ASP11 4.6 36.0 1.0 OD2 C:ASP154 4.7 29.8 1.0 CG2 C:VAL339 4.7 32.4 1.0 PA C:ADP401 4.8 38.0 1.0 CG C:ASP154 4.8 29.8 1.0 CA C:GLY156 4.8 29.4 1.0

Magnesium binding site 4 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:37.7 occ:1.00 O1B D:ADP401 2.0 38.0 1.0 PB D:ADP401 3.4 38.0 1.0 OD1 D:ASP154 3.7 29.6 1.0 OE1 D:GLN137 3.9 32.0 1.0 O2B D:ADP401 4.0 38.0 1.0 NE2 D:GLN137 4.0 32.0 1.0 OD2 D:ASP11 4.1 35.5 1.0 CD D:GLN137 4.1 32.0 1.0 O3A D:ADP401 4.2 38.0 1.0 O1A D:ADP401 4.2 38.0 1.0 OD1 D:ASP11 4.3 35.5 1.0 NZ D:LYS18 4.5 32.5 1.0 O D:HOH519 4.5 32.7 1.0 CA D:GLY13 4.5 32.6 1.0 O3B D:ADP401 4.5 38.0 1.0 OD2 D:ASP154 4.5 29.6 1.0 CG D:ASP154 4.6 29.6 1.0 CG D:ASP11 4.6 35.5 1.0 CG2 D:VAL339 4.7 33.2 1.0 O D:HOH507 4.7 25.6 1.0 PA D:ADP401 4.8 38.0 1.0 CA D:GLY156 4.8 28.7 1.0

Magnesium binding site 5 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:35.0 occ:1.00 O1B E:ADP401 2.1 30.5 1.0 PB E:ADP401 3.5 30.5 1.0 OE1 E:GLN137 3.9 34.1 1.0 OD1 E:ASP154 3.9 28.7 1.0 O2B E:ADP401 4.0 30.5 1.0 NE2 E:GLN137 4.0 34.1 1.0 CD E:GLN137 4.1 34.1 1.0 OD2 E:ASP11 4.1 38.3 1.0 O3A E:ADP401 4.2 30.5 1.0 O1A E:ADP401 4.2 30.5 1.0 OD1 E:ASP11 4.4 38.3 1.0 NZ E:LYS18 4.5 36.3 1.0 CA E:GLY13 4.6 33.0 1.0 O3B E:ADP401 4.6 30.5 1.0 OD2 E:ASP154 4.6 28.7 1.0 O E:HOH506 4.7 32.1 1.0 CG E:ASP11 4.7 38.3 1.0 CG2 E:VAL339 4.7 35.9 1.0 CG E:ASP154 4.7 28.7 1.0 PA E:ADP401 4.8 30.5 1.0 CA E:GLY156 4.8 26.4 1.0

Magnesium binding site 6 out of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryogenic Electron Microscopy 3D Map of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:42.6 occ:1.00 O1B F:ADP401 2.0 37.7 1.0 PB F:ADP401 3.4 37.7 1.0 OD1 F:ASP154 3.9 35.5 1.0 OE1 F:GLN137 3.9 39.0 1.0 O2B F:ADP401 4.0 37.7 1.0 NE2 F:GLN137 4.1 39.0 1.0 CD F:GLN137 4.1 39.0 1.0 OD2 F:ASP11 4.1 46.0 1.0 O3A F:ADP401 4.2 37.7 1.0 O1A F:ADP401 4.2 37.7 1.0 O F:HOH504 4.4 38.8 1.0 OD1 F:ASP11 4.4 46.0 1.0 O3B F:ADP401 4.5 37.7 1.0 NZ F:LYS18 4.5 45.1 1.0 CA F:GLY13 4.5 42.1 1.0 OD2 F:ASP154 4.7 35.5 1.0 CG F:ASP11 4.7 46.0 1.0 CA F:GLY156 4.7 36.0 1.0 CG2 F:VAL339 4.7 41.6 1.0 CG F:ASP154 4.7 35.5 1.0 PA F:ADP401 4.7 37.7 1.0

E.S.Rangarajan, E.W.Smith, T.Izard. Distinct Inter-Domain Interactions of Dimeric Versus Monomeric Alpha-Catenin Link the Membrane or Junctions to Filaments To Be Published.