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Magnesium in PDB 7uyc: Inhibitor Bound VIM1

Protein crystallography data

The structure of Inhibitor Bound VIM1, PDB code: 7uyc was solved by T.O.Fischmann, G.Scapin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.93 / 1.02
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.507, 67.927, 40.165, 90, 91.67, 90
R / Rfree (%) 15.2 / 16.4

Other elements in 7uyc:

The structure of Inhibitor Bound VIM1 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Inhibitor Bound VIM1 (pdb code 7uyc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Inhibitor Bound VIM1, PDB code: 7uyc:

Magnesium binding site 1 out of 1 in 7uyc

Go back to Magnesium Binding Sites List in 7uyc
Magnesium binding site 1 out of 1 in the Inhibitor Bound VIM1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Inhibitor Bound VIM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:20.0
occ:1.00
O A:HOH412 1.9 12.7 0.5
O A:HOH717 1.9 30.8 1.0
O A:HOH412 2.0 18.6 0.5
O A:HOH543 2.1 20.7 1.0
O A:HOH627 2.1 25.7 1.0
O A:HOH409 2.3 13.2 1.0
O A:HOH417 3.7 75.2 1.0
OE2 A:GLU149 3.9 14.6 1.0
OD2 A:ASP117 4.0 18.2 1.0
O A:GLY147 4.1 13.8 1.0
OD1 A:ASP117 4.2 12.3 1.0
N A:GLU149 4.3 10.8 1.0
CA A:ASN148 4.3 10.5 1.0
CG A:GLU149 4.4 11.9 1.0
O A:HOH691 4.4 28.2 1.0
CG A:ASP117 4.5 11.8 1.0
CD A:GLU149 4.5 11.7 1.0
OD1 A:ASN148 4.5 11.7 1.0
C A:ASN148 4.7 11.1 1.0
O A:HOH416 5.0 81.1 1.0

Reference:

T.O.Fischmann, G.Scapin. Inhibitor Bound VIM1 To Be Published.
Page generated: Thu Oct 3 10:17:20 2024

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