Magnesium in PDB 7v5c: Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound)

All present enzymatic activity of Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound):
7.4.2.6;

The structure of Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound) also contains other interesting chemical elements:

Fluorine

(F)

6 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound) (pdb code 7v5c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound), PDB code: 7v5c:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:83.1 occ:1.00 OG A:SER542 1.8 83.2 1.0 F3 A:BEF802 1.8 87.2 1.0 OE1 A:GLN583 2.4 92.1 1.0 CD A:GLN583 3.0 92.1 1.0 CB A:SER542 3.1 83.2 1.0 O1B A:ADP801 3.1 79.9 1.0 NE2 A:GLN583 3.3 92.1 1.0 BE A:BEF802 3.5 87.2 1.0 OD1 A:ASP663 3.6 93.8 1.0 O2B A:ADP801 3.6 79.9 1.0 PB A:ADP801 3.9 79.9 1.0 N A:SER542 4.0 83.2 1.0 CA A:SER542 4.0 83.2 1.0 CG A:GLN583 4.0 92.1 1.0 OD2 A:ASP663 4.1 93.8 1.0 CG A:ASP663 4.2 93.8 1.0 CB A:GLN583 4.3 92.1 1.0 F1 A:BEF802 4.5 87.2 1.0 F2 A:BEF802 4.7 87.2 1.0 O1A A:ADP801 4.7 79.9 1.0 O3B A:ADP801 4.7 79.9 1.0 N B:GLY641 4.8 80.3 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Mouse ABCB9 (Adp.BEF3-Bound) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg803 b:87.7 occ:1.00 F3 B:BEF802 1.8 88.4 1.0 OG B:SER542 1.8 84.8 1.0 OE1 B:GLN583 2.4 91.8 1.0 CD B:GLN583 2.8 91.8 1.0 NE2 B:GLN583 3.1 91.8 1.0 CB B:SER542 3.2 84.8 1.0 O1B B:ADP801 3.4 81.0 1.0 BE B:BEF802 3.5 88.4 1.0 OD1 B:ASP663 3.7 93.2 1.0 CG B:GLN583 3.8 91.8 1.0 O2B B:ADP801 3.9 81.0 1.0 OD2 B:ASP663 4.1 93.2 1.0 N B:SER542 4.1 84.8 1.0 CA B:SER542 4.1 84.8 1.0 PB B:ADP801 4.1 81.0 1.0 CB B:GLN583 4.1 91.8 1.0 CG B:ASP663 4.3 93.2 1.0 OE1 B:GLU664 4.4 101.0 1.0 F1 B:BEF802 4.5 88.4 1.0 F2 B:BEF802 4.8 88.4 1.0 CB B:GLU664 4.9 101.0 1.0 N A:GLY641 4.9 81.6 1.0 O3B B:ADP801 4.9 81.0 1.0 O1A B:ADP801 5.0 81.0 1.0

J.G.Park, S.Kim, E.Jang, S.H.Choi, H.Han, S.Ju, J.W.Kim, D.S.Min, M.S.Jin. The Lysosomal Transporter Tapl Has A Dual Role As Peptide Translocator and Phosphatidylserine Floppase. Nat Commun V. 13 5851 2022.
ISSN: ESSN 2041-1723
PubMed: 36195619
DOI: 10.1038/S41467-022-33593-2