Magnesium in PDB 7vcf: Cryo-Em Structure of Chlamydomonas Toc-Tic Supercomplex

The binding sites of Magnesium atom in the Cryo-Em Structure of Chlamydomonas Toc-Tic Supercomplex (pdb code 7vcf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Chlamydomonas Toc-Tic Supercomplex, PDB code: 7vcf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Chlamydomonas Toc-Tic Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Chlamydomonas Toc-Tic Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1001 b:77.2 occ:1.00 OE1 F:GLU706 2.4 53.5 1.0 SG F:CYS704 2.9 46.0 1.0 CD F:GLU706 3.5 53.5 1.0 CD K:ARG72 4.0 56.5 1.0 OG F:SER665 4.0 56.7 1.0 CG F:GLU706 4.1 53.5 1.0 OE1 F:GLN715 4.2 47.6 1.0 SG F:CYS713 4.3 49.7 1.0 NE K:ARG72 4.3 56.5 1.0 CB F:SER665 4.4 56.7 1.0 NZ K:LYS70 4.5 56.5 1.0 CB F:CYS704 4.5 46.0 1.0 OE2 F:GLU706 4.6 53.5 1.0 CD K:LYS70 4.6 56.5 1.0 CE K:LYS70 4.9 56.5 1.0 CD F:GLN715 4.9 47.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Chlamydomonas Toc-Tic Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Chlamydomonas Toc-Tic Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ T:Mg1001 b:43.9 occ:1.00 O3P T:TPO712 2.1 32.6 1.0 O2P T:TPO712 2.2 32.6 1.0 O1P T:TPO708 2.3 30.2 1.0 P T:TPO712 2.6 32.6 1.0 P T:TPO708 3.5 30.2 1.0 O1P T:TPO712 3.6 32.6 1.0 O3P T:TPO708 3.7 30.2 1.0 CB T:TPO712 3.8 32.6 1.0 OG1 T:TPO712 3.8 32.6 1.0 NH2 T:ARG478 4.0 27.8 1.0 O T:ASP707 4.1 34.9 1.0 OG1 T:TPO708 4.4 30.2 1.0 CG2 T:TPO712 4.4 32.6 1.0 CA T:TPO708 4.5 30.2 1.0 CB T:TPO708 4.7 30.2 1.0 O2P T:TPO708 4.7 30.2 1.0 OD2 T:ASP705 4.9 35.8 1.0

Z.Jin, L.Wan, Y.Zhang, X.Li, Y.Cao, H.Liu, S.Fan, D.Cao, Z.Wang, X.Li, J.Pan, M.Q.Dong, J.Wu, Z.Yan. Structure of A Toc-Tic Supercomplex Spanning Two Chloroplast Envelope Membranes. Cell V. 185 4788 2022.
ISSN: ISSN 1097-4172
PubMed: 36413996
DOI: 10.1016/J.CELL.2022.10.030