Atomistry » Magnesium » PDB 7v2k-7vh4 » 7vcv
Atomistry »
  Magnesium »
    PDB 7v2k-7vh4 »
      7vcv »

Magnesium in PDB 7vcv: Human P97 Single Hexamer Conformer I with Atpgammas Bound

Enzymatic activity of Human P97 Single Hexamer Conformer I with Atpgammas Bound

All present enzymatic activity of Human P97 Single Hexamer Conformer I with Atpgammas Bound:
3.6.4.6;

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Human P97 Single Hexamer Conformer I with Atpgammas Bound (pdb code 7vcv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Human P97 Single Hexamer Conformer I with Atpgammas Bound, PDB code: 7vcv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 1 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:51.0
occ:1.00
 O2G A:AGS901 2.1 23.9 1.0
OG1 A:THR252 2.1 21.1 1.0
O1B A:AGS901 2.3 23.9 1.0
CB A:THR252 3.4 21.1 1.0
PG A:AGS901 3.6 23.9 1.0
PB A:AGS901 3.6 23.9 1.0
OD2 A:ASP304 3.8 31.1 1.0
OD1 A:ASP304 3.9 31.1 1.0
O3B A:AGS901 4.1 23.9 1.0
CG2 A:THR252 4.1 21.1 1.0
CG A:ASP304 4.3 31.1 1.0
N A:THR252 4.3 21.1 1.0
O2B A:AGS901 4.4 23.9 1.0
O3G A:AGS901 4.4 23.9 1.0
CA A:THR252 4.4 21.1 1.0
O1A A:AGS901 4.5 23.9 1.0
OE2 A:GLU305 4.8 27.4 1.0
O3A A:AGS901 4.8 23.9 1.0
S1G A:AGS901 4.8 23.9 1.0
O2A A:AGS901 4.9 23.9 1.0
PA A:AGS901 4.9 23.9 1.0

Magnesium binding site 2 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 2 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg904

b:42.4
occ:1.00
 O1B A:AGS903 2.3 62.4 1.0
OG1 A:THR525 2.6 45.3 1.0
O2G A:AGS903 3.1 62.4 1.0
O1A A:AGS903 3.1 62.4 1.0
OD2 A:ASP577 3.5 45.8 1.0
PB A:AGS903 3.7 62.4 1.0
CB A:THR525 3.8 45.3 1.0
PA A:AGS903 4.1 62.4 1.0
O3A A:AGS903 4.3 62.4 1.0
PG A:AGS903 4.3 62.4 1.0
CG A:ASP577 4.4 45.8 1.0
OD1 A:ASP577 4.4 45.8 1.0
CG2 A:THR525 4.4 45.3 1.0
O3B A:AGS903 4.5 62.4 1.0
O2A A:AGS903 4.6 62.4 1.0
O2B A:AGS903 4.8 62.4 1.0
O3G A:AGS903 4.9 62.4 1.0
OE2 A:GLU578 4.9 58.4 1.0

Magnesium binding site 3 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 3 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg902

b:18.6
occ:1.00
 O2G F:AGS901 2.1 22.4 1.0
OG1 F:THR252 2.1 21.3 1.0
O1B F:AGS901 2.3 22.4 1.0
CB F:THR252 3.4 21.3 1.0
PG F:AGS901 3.6 22.4 1.0
PB F:AGS901 3.6 22.4 1.0
OD2 F:ASP304 3.8 22.3 1.0
OD1 F:ASP304 3.9 22.3 1.0
O3B F:AGS901 4.1 22.4 1.0
CG2 F:THR252 4.1 21.3 1.0
CG F:ASP304 4.3 22.3 1.0
N F:THR252 4.3 21.3 1.0
O2B F:AGS901 4.4 22.4 1.0
O3G F:AGS901 4.4 22.4 1.0
CA F:THR252 4.4 21.3 1.0
O1A F:AGS901 4.5 22.4 1.0
OE2 F:GLU305 4.8 21.9 1.0
O3A F:AGS901 4.8 22.4 1.0
S1G F:AGS901 4.8 22.4 1.0
O2A F:AGS901 4.9 22.4 1.0
PA F:AGS901 4.9 22.4 1.0

Magnesium binding site 4 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 4 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg904

b:43.6
occ:1.00
 O1B F:AGS903 2.3 61.9 1.0
OG1 F:THR525 2.6 45.2 1.0
O2G F:AGS903 3.1 61.9 1.0
O1A F:AGS903 3.2 61.9 1.0
OD2 F:ASP577 3.5 44.4 1.0
PB F:AGS903 3.7 61.9 1.0
CB F:THR525 3.8 45.2 1.0
PA F:AGS903 4.1 61.9 1.0
O3A F:AGS903 4.3 61.9 1.0
PG F:AGS903 4.3 61.9 1.0
CG F:ASP577 4.4 44.4 1.0
OD1 F:ASP577 4.4 44.4 1.0
CG2 F:THR525 4.4 45.2 1.0
O3B F:AGS903 4.5 61.9 1.0
O2A F:AGS903 4.6 61.9 1.0
O2B F:AGS903 4.8 61.9 1.0
O3G F:AGS903 4.9 61.9 1.0
OE2 F:GLU578 4.9 56.9 1.0

Magnesium binding site 5 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 5 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg902

b:51.0
occ:1.00
 O2G E:AGS901 2.1 23.5 1.0
OG1 E:THR252 2.1 20.8 1.0
O1B E:AGS901 2.3 23.5 1.0
CB E:THR252 3.4 20.8 1.0
PG E:AGS901 3.6 23.5 1.0
PB E:AGS901 3.6 23.5 1.0
OD2 E:ASP304 3.8 26.6 1.0
OD1 E:ASP304 3.9 26.6 1.0
O3B E:AGS901 4.1 23.5 1.0
CG2 E:THR252 4.1 20.8 1.0
CG E:ASP304 4.3 26.6 1.0
N E:THR252 4.3 20.8 1.0
O2B E:AGS901 4.4 23.5 1.0
O3G E:AGS901 4.4 23.5 1.0
CA E:THR252 4.4 20.8 1.0
O1A E:AGS901 4.5 23.5 1.0
OE2 E:GLU305 4.8 24.8 1.0
O3A E:AGS901 4.8 23.5 1.0
S1G E:AGS901 4.8 23.5 1.0
O2A E:AGS901 4.9 23.5 1.0
PA E:AGS901 4.9 23.5 1.0

Magnesium binding site 6 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 6 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg904

b:45.6
occ:1.00
 O1B E:AGS903 2.3 63.9 1.0
OG1 E:THR525 2.6 46.3 1.0
O2G E:AGS903 3.1 63.9 1.0
O1A E:AGS903 3.2 63.9 1.0
OD2 E:ASP577 3.5 46.3 1.0
PB E:AGS903 3.7 63.9 1.0
CB E:THR525 3.8 46.3 1.0
PA E:AGS903 4.1 63.9 1.0
O3A E:AGS903 4.3 63.9 1.0
PG E:AGS903 4.3 63.9 1.0
CG E:ASP577 4.4 46.3 1.0
OD1 E:ASP577 4.4 46.3 1.0
CG2 E:THR525 4.4 46.3 1.0
O3B E:AGS903 4.5 63.9 1.0
O2A E:AGS903 4.6 63.9 1.0
O2B E:AGS903 4.8 63.9 1.0
O3G E:AGS903 4.9 63.9 1.0
OE2 E:GLU578 4.9 58.5 1.0

Magnesium binding site 7 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 7 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg902

b:51.0
occ:1.00
 O2G D:AGS901 2.1 28.7 1.0
OG1 D:THR252 2.1 33.4 1.0
O1B D:AGS901 2.3 28.7 1.0
CB D:THR252 3.4 33.4 1.0
PG D:AGS901 3.6 28.7 1.0
PB D:AGS901 3.6 28.7 1.0
OD2 D:ASP304 3.8 34.1 1.0
OD1 D:ASP304 3.9 34.1 1.0
O3B D:AGS901 4.1 28.7 1.0
CG2 D:THR252 4.1 33.4 1.0
CG D:ASP304 4.3 34.1 1.0
N D:THR252 4.3 33.4 1.0
O2B D:AGS901 4.4 28.7 1.0
O3G D:AGS901 4.4 28.7 1.0
CA D:THR252 4.4 33.4 1.0
O1A D:AGS901 4.5 28.7 1.0
OE2 D:GLU305 4.8 22.7 1.0
O3A D:AGS901 4.8 28.7 1.0
S1G D:AGS901 4.8 28.7 1.0
O2A D:AGS901 4.9 28.7 1.0
PA D:AGS901 4.9 28.7 1.0

Magnesium binding site 8 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 8 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg904

b:41.0
occ:1.00
 O1B D:AGS903 2.3 62.5 1.0
OG1 D:THR525 2.6 44.8 1.0
O2G D:AGS903 3.1 62.5 1.0
O1A D:AGS903 3.1 62.5 1.0
OD2 D:ASP577 3.5 46.1 1.0
PB D:AGS903 3.7 62.5 1.0
CB D:THR525 3.8 44.8 1.0
PA D:AGS903 4.1 62.5 1.0
O3A D:AGS903 4.3 62.5 1.0
PG D:AGS903 4.3 62.5 1.0
CG D:ASP577 4.4 46.1 1.0
OD1 D:ASP577 4.4 46.1 1.0
CG2 D:THR525 4.4 44.8 1.0
O3B D:AGS903 4.5 62.5 1.0
O2A D:AGS903 4.6 62.5 1.0
O2B D:AGS903 4.8 62.5 1.0
O3G D:AGS903 4.9 62.5 1.0
OE2 D:GLU578 4.9 58.8 1.0

Magnesium binding site 9 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 9 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg902

b:17.2
occ:1.00
 O2G C:AGS901 2.1 21.4 1.0
OG1 C:THR252 2.1 18.8 1.0
O1B C:AGS901 2.3 21.4 1.0
CB C:THR252 3.4 18.8 1.0
PG C:AGS901 3.6 21.4 1.0
PB C:AGS901 3.6 21.4 1.0
OD2 C:ASP304 3.8 19.6 1.0
OD1 C:ASP304 3.9 19.6 1.0
O3B C:AGS901 4.1 21.4 1.0
CG2 C:THR252 4.1 18.8 1.0
CG C:ASP304 4.3 19.6 1.0
N C:THR252 4.3 18.8 1.0
O2B C:AGS901 4.4 21.4 1.0
O3G C:AGS901 4.4 21.4 1.0
CA C:THR252 4.4 18.8 1.0
O1A C:AGS901 4.5 21.4 1.0
OE2 C:GLU305 4.8 21.0 1.0
O3A C:AGS901 4.8 21.4 1.0
S1G C:AGS901 4.8 21.4 1.0
O2A C:AGS901 4.9 21.4 1.0
PA C:AGS901 4.9 21.4 1.0

Magnesium binding site 10 out of 12 in 7vcv

Go back to Magnesium Binding Sites List in 7vcv
Magnesium binding site 10 out of 12 in the Human P97 Single Hexamer Conformer I with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Human P97 Single Hexamer Conformer I with Atpgammas Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg904

b:43.8
occ:1.00
 O1B C:AGS903 2.3 62.0 1.0
OG1 C:THR525 2.6 45.0 1.0
O2G C:AGS903 3.1 62.0 1.0
O1A C:AGS903 3.1 62.0 1.0
OD2 C:ASP577 3.5 44.4 1.0
PB C:AGS903 3.7 62.0 1.0
CB C:THR525 3.8 45.0 1.0
PA C:AGS903 4.1 62.0 1.0
O3A C:AGS903 4.3 62.0 1.0
PG C:AGS903 4.3 62.0 1.0
CG C:ASP577 4.4 44.4 1.0
OD1 C:ASP577 4.4 44.4 1.0
CG2 C:THR525 4.4 45.0 1.0
O3B C:AGS903 4.5 62.0 1.0
O2A C:AGS903 4.6 62.0 1.0
O2B C:AGS903 4.8 62.0 1.0
O3G C:AGS903 4.9 62.0 1.0
OE2 C:GLU578 4.9 56.7 1.0

Reference:

H.Gao, F.Li, Z.Ji, Z.Shi, Y.Li, H.Yu. Cryo-Em Structures of Human P97 Double Hexamer Capture Potentiated Atpase-Competent State. Cell Discov V. 8 19 2022.
ISSN: ESSN 2056-5968
PubMed: 35190543
DOI: 10.1038/S41421-022-00379-1
Page generated: Thu Oct 3 10:24:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy