Magnesium in PDB 7vok: The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis

The structure of The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis, PDB code: 7vok was solved by B.W.Zhan, J.X.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.95 / 3.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	95.059, 75.18, 127.176, 90, 93.77, 90
R / Rfree (%)	24.4 / 30.2

The binding sites of Magnesium atom in the The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis (pdb code 7vok). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis, PDB code: 7vok:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:7.8 occ:1.00 OG1 A:THR26 2.1 16.7 1.0 O2B A:GDP401 2.2 20.6 1.0 O A:ALA84 3.2 16.5 1.0 OD1 A:ASP83 3.4 16.9 1.0 CB A:THR26 3.5 17.0 1.0 PB A:GDP401 3.6 18.1 1.0 CA A:PRO85 3.9 17.9 1.0 OD1 A:ASP53 4.0 17.6 1.0 C A:ALA84 4.1 17.0 1.0 N A:THR26 4.1 16.5 1.0 O3B A:GDP401 4.2 27.4 1.0 O1B A:GDP401 4.2 17.4 1.0 NZ A:LYS25 4.3 16.1 1.0 O2A A:GDP401 4.3 18.4 1.0 CG2 A:THR26 4.3 18.9 1.0 CA A:THR26 4.4 16.8 1.0 N A:PRO85 4.4 17.3 1.0 CE A:LYS25 4.4 14.7 1.0 CG A:ASP83 4.5 17.1 1.0 O A:PRO85 4.5 18.4 1.0 C A:PRO85 4.7 18.4 1.0 OH A:TYR90 4.7 15.9 1.0 O3A A:GDP401 4.8 17.8 1.0 OD2 A:ASP83 4.8 16.7 1.0 CB A:PRO85 4.8 18.2 1.0 PA A:GDP401 4.9 18.1 1.0 O1A A:GDP401 4.9 22.5 1.0 CB A:LYS25 4.9 15.1 1.0

Magnesium binding site 2 out of 4 in the The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:46.7 occ:1.00 O2B B:GDP401 1.8 55.6 1.0 OG1 B:THR26 2.1 66.5 1.0 PB B:GDP401 2.7 65.1 1.0 O3B B:GDP401 2.9 65.6 1.0 CA B:PRO85 3.1 74.5 1.0 O1B B:GDP401 3.1 67.8 1.0 CB B:THR26 3.2 67.6 1.0 CB B:PRO85 3.5 76.7 1.0 O B:ALA84 3.5 71.3 1.0 OD1 B:ASP53 3.7 89.6 1.0 N B:PRO85 3.9 76.6 1.0 C B:ALA84 4.0 75.4 1.0 OD2 B:ASP83 4.1 64.1 1.0 C B:PRO85 4.1 71.0 1.0 CG2 B:THR26 4.1 66.5 1.0 O B:PRO85 4.1 71.9 1.0 O3A B:GDP401 4.1 62.5 1.0 N B:THR26 4.2 62.5 1.0 CA B:THR26 4.3 58.4 1.0 O1A B:GDP401 4.4 93.5 1.0 PA B:GDP401 4.7 82.9 1.0 CG B:ASP53 4.7 92.1 1.0 CG B:PRO85 4.7 78.0 1.0 OD1 B:ASP83 4.8 59.1 1.0 O2A B:GDP401 4.8 68.3 1.0 CD B:PRO85 4.8 75.0 1.0 CG B:ASP83 4.9 57.8 1.0 CE B:LYS25 4.9 46.0 1.0

Magnesium binding site 3 out of 4 in the The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:20.0 occ:1.00 OG1 C:THR26 2.1 31.9 1.0 O2B C:GDP401 2.5 33.0 1.0 O1B C:GDP401 2.9 48.5 1.0 PB C:GDP401 3.3 38.0 1.0 CB C:THR26 3.5 38.6 1.0 OD2 C:ASP53 3.5 59.0 1.0 O C:ALA84 3.6 41.2 1.0 OD1 C:ASP83 3.8 33.5 1.0 O2A C:GDP401 3.9 42.4 1.0 CA C:PRO85 3.9 43.5 1.0 N C:THR26 4.2 30.8 1.0 CG2 C:THR26 4.3 42.5 1.0 O3B C:GDP401 4.4 41.9 1.0 C C:ALA84 4.4 38.7 1.0 O3A C:GDP401 4.4 37.3 1.0 CA C:THR26 4.4 31.2 1.0 PA C:GDP401 4.5 37.8 1.0 N C:PRO85 4.6 40.3 1.0 CB C:PRO85 4.6 45.3 1.0 CG C:ASP53 4.6 61.4 1.0 O1A C:GDP401 4.6 47.6 1.0 O C:PRO85 4.7 48.0 1.0 CE C:LYS25 4.8 33.7 1.0 CG C:ASP83 4.8 33.0 1.0 C C:PRO85 4.8 46.4 1.0

Magnesium binding site 4 out of 4 in the The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:86.5 occ:1.00 OG1 D:THR26 2.1 97.7 1.0 CB D:PRO85 3.0 91.7 1.0 CA D:PRO85 3.3 86.5 1.0 OD1 D:ASP53 3.3 130.0 1.0 CB D:THR26 3.4 100.7 1.0 OD2 D:ASP83 3.4 84.4 1.0 O2B D:GDP401 3.5 104.9 1.0 N D:PRO85 3.5 89.6 1.0 CD D:PRO85 3.6 87.4 1.0 CG2 D:THR26 3.7 107.6 1.0 CG D:PRO85 3.8 91.9 1.0 CG D:ASP53 4.1 137.3 1.0 CA D:ASP53 4.3 133.6 1.0 CA D:THR26 4.3 98.3 1.0 C D:ALA84 4.3 89.5 1.0 CG D:ASP83 4.4 84.6 1.0 N D:THR26 4.4 105.8 1.0 O2A D:GDP401 4.5 127.1 1.0 O D:ASP53 4.6 132.7 1.0 O D:ILE52 4.7 116.0 1.0 C D:PRO85 4.7 82.5 1.0 OD1 D:ASP83 4.8 82.7 1.0 CB D:ASP53 4.8 132.3 1.0 O1A D:GDP401 4.8 112.3 1.0 O D:ALA84 4.9 94.2 1.0 OD2 D:ASP53 4.9 153.1 1.0 PB D:GDP401 4.9 126.6 1.0 C D:ASP53 5.0 134.2 1.0

B.W.Zhan, J.X.Li. The Crystal Structure of Ef-Tu and Gdp From Mycobacterium Tuberculosis To Be Published.