Magnesium in PDB 7voy: Rba Sphaeroides Pufx-Ko Rc-LH1

The structure of Rba Sphaeroides Pufx-Ko Rc-LH1 also contains other interesting chemical elements:

Iron

(Fe)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 38;

Binding sites:

The binding sites of Magnesium atom in the Rba Sphaeroides Pufx-Ko Rc-LH1 (pdb code 7voy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 38 binding sites of Magnesium where determined in the Rba Sphaeroides Pufx-Ko Rc-LH1, PDB code: 7voy:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:50.3 occ:1.00 MG A:BCL101 0.0 50.3 1.0 ND A:BCL101 2.0 50.3 1.0 NB A:BCL101 2.0 50.3 1.0 NC A:BCL101 2.1 50.3 1.0 NA A:BCL101 2.2 50.3 1.0 C4D A:BCL101 3.0 50.3 1.0 C1B A:BCL101 3.0 50.3 1.0 C4B A:BCL101 3.1 50.3 1.0 C1D A:BCL101 3.1 50.3 1.0 C4A A:BCL101 3.1 50.3 1.0 NE2 A:HIS32 3.1 54.2 1.0 C1C A:BCL101 3.1 50.3 1.0 C4C A:BCL101 3.1 50.3 1.0 C1A A:BCL101 3.2 50.3 1.0 CHB A:BCL101 3.4 50.3 1.0 CHC A:BCL101 3.4 50.3 1.0 CHD A:BCL101 3.4 50.3 1.0 CHA A:BCL101 3.4 50.3 1.0 CE1 A:HIS32 3.9 54.2 1.0 C3D A:BCL101 4.2 50.3 1.0 CD2 A:HIS32 4.2 54.2 1.0 C2D A:BCL101 4.2 50.3 1.0 C2B A:BCL101 4.2 50.3 1.0 C3C A:BCL101 4.3 50.3 1.0 C3B A:BCL101 4.3 50.3 1.0 CBB 0:BCL101 4.3 46.5 1.0 C2C A:BCL101 4.3 50.3 1.0 C3A A:BCL101 4.4 50.3 1.0 C2A A:BCL101 4.5 50.3 1.0 CMB 0:BCL101 4.8 46.5 1.0 CMA A:BCL101 4.9 50.3 1.0 C2B 0:BCL101 4.9 46.5 1.0 CBD A:BCL101 4.9 50.3 1.0 CMC A:BCL101 4.9 50.3 1.0

Magnesium binding site 2 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:49.6 occ:1.00 MG B:BCL101 0.0 49.6 1.0 ND B:BCL101 2.0 49.6 1.0 NB B:BCL101 2.0 49.6 1.0 NC B:BCL101 2.1 49.6 1.0 NA B:BCL101 2.2 49.6 1.0 NE2 B:HIS39 2.8 70.4 1.0 C4D B:BCL101 3.0 49.6 1.0 C1B B:BCL101 3.0 49.6 1.0 C4B B:BCL101 3.0 49.6 1.0 C1C B:BCL101 3.1 49.6 1.0 C1D B:BCL101 3.1 49.6 1.0 C4A B:BCL101 3.1 49.6 1.0 C4C B:BCL101 3.1 49.6 1.0 C1A B:BCL101 3.2 49.6 1.0 CD2 B:HIS39 3.2 70.4 1.0 CHC B:BCL101 3.4 49.6 1.0 CHB B:BCL101 3.4 49.6 1.0 CHA B:BCL101 3.4 49.6 1.0 CHD B:BCL101 3.5 49.6 1.0 CE1 B:HIS39 4.0 70.4 1.0 C2B B:BCL101 4.1 49.6 1.0 C3B B:BCL101 4.2 49.6 1.0 C3D B:BCL101 4.2 49.6 1.0 C2D B:BCL101 4.3 49.6 1.0 C2C B:BCL101 4.4 49.6 1.0 C3C B:BCL101 4.4 49.6 1.0 C3A B:BCL101 4.4 49.6 1.0 C2A B:BCL101 4.5 49.6 1.0 CG B:HIS39 4.5 70.4 1.0 ND1 B:HIS39 4.8 70.4 1.0 CBD B:BCL101 4.9 49.6 1.0

Magnesium binding site 3 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg101 b:39.3 occ:1.00 MG E:BCL101 0.0 39.3 1.0 ND E:BCL101 2.0 39.3 1.0 NB E:BCL101 2.0 39.3 1.0 NC E:BCL101 2.1 39.3 1.0 NA E:BCL101 2.1 39.3 1.0 C4D E:BCL101 3.0 39.3 1.0 C1B E:BCL101 3.0 39.3 1.0 C1D E:BCL101 3.1 39.3 1.0 C4B E:BCL101 3.1 39.3 1.0 C4A E:BCL101 3.1 39.3 1.0 C1C E:BCL101 3.1 39.3 1.0 C4C E:BCL101 3.1 39.3 1.0 C1A E:BCL101 3.2 39.3 1.0 CHB E:BCL101 3.3 39.3 1.0 NE2 D:HIS32 3.4 46.5 1.0 CHC E:BCL101 3.4 39.3 1.0 CHD E:BCL101 3.4 39.3 1.0 CHA E:BCL101 3.4 39.3 1.0 CD2 D:HIS32 4.0 46.5 1.0 C3D E:BCL101 4.2 39.3 1.0 CBB B:BCL101 4.2 49.6 1.0 C2B E:BCL101 4.2 39.3 1.0 C2D E:BCL101 4.2 39.3 1.0 C3C E:BCL101 4.2 39.3 1.0 C3B E:BCL101 4.3 39.3 1.0 C2C E:BCL101 4.3 39.3 1.0 C3A E:BCL101 4.4 39.3 1.0 C2A E:BCL101 4.5 39.3 1.0 CE1 D:HIS32 4.5 46.5 1.0 CMB B:BCL101 4.7 49.6 1.0 CMC E:BCL101 4.8 39.3 1.0 C2B B:BCL101 4.8 49.6 1.0 CBD E:BCL101 4.9 39.3 1.0

Magnesium binding site 4 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg102 b:39.5 occ:1.00 MG E:BCL102 0.0 39.5 1.0 ND E:BCL102 2.0 39.5 1.0 NB E:BCL102 2.0 39.5 1.0 NC E:BCL102 2.1 39.5 1.0 NA E:BCL102 2.2 39.5 1.0 NE2 E:HIS39 2.8 60.7 1.0 C4D E:BCL102 3.0 39.5 1.0 C1B E:BCL102 3.0 39.5 1.0 C4B E:BCL102 3.0 39.5 1.0 C1C E:BCL102 3.1 39.5 1.0 C1D E:BCL102 3.1 39.5 1.0 C4A E:BCL102 3.1 39.5 1.0 C4C E:BCL102 3.1 39.5 1.0 C1A E:BCL102 3.2 39.5 1.0 CD2 E:HIS39 3.2 60.7 1.0 CHC E:BCL102 3.4 39.5 1.0 CHB E:BCL102 3.4 39.5 1.0 CHA E:BCL102 3.4 39.5 1.0 CHD E:BCL102 3.5 39.5 1.0 CE1 E:HIS39 4.0 60.7 1.0 C2B E:BCL102 4.1 39.5 1.0 C3B E:BCL102 4.2 39.5 1.0 C3D E:BCL102 4.2 39.5 1.0 C2D E:BCL102 4.3 39.5 1.0 C2C E:BCL102 4.4 39.5 1.0 CMB F:BCL101 4.4 37.3 1.0 C3C E:BCL102 4.4 39.5 1.0 C3A E:BCL102 4.4 39.5 1.0 C2A E:BCL102 4.5 39.5 1.0 CG E:HIS39 4.5 60.7 1.0 ND1 E:HIS39 4.8 60.7 1.0 C2B F:BCL101 4.9 37.3 1.0 CBD E:BCL102 4.9 39.5 1.0 CAB F:BCL101 5.0 37.3 1.0

Magnesium binding site 5 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg101 b:37.3 occ:1.00 MG F:BCL101 0.0 37.3 1.0 ND F:BCL101 2.0 37.3 1.0 NB F:BCL101 2.0 37.3 1.0 NC F:BCL101 2.1 37.3 1.0 NA F:BCL101 2.2 37.3 1.0 C4D F:BCL101 3.0 37.3 1.0 C1B F:BCL101 3.1 37.3 1.0 C4B F:BCL101 3.1 37.3 1.0 C1D F:BCL101 3.1 37.3 1.0 C1C F:BCL101 3.1 37.3 1.0 C4A F:BCL101 3.1 37.3 1.0 C4C F:BCL101 3.1 37.3 1.0 C1A F:BCL101 3.2 37.3 1.0 NE2 F:HIS32 3.3 38.1 1.0 CHB F:BCL101 3.4 37.3 1.0 CHC F:BCL101 3.4 37.3 1.0 CHA F:BCL101 3.4 37.3 1.0 CHD F:BCL101 3.5 37.3 1.0 C3D F:BCL101 4.2 37.3 1.0 CBB E:BCL102 4.2 39.5 1.0 C2B F:BCL101 4.3 37.3 1.0 C2D F:BCL101 4.3 37.3 1.0 CE1 F:HIS32 4.3 38.1 1.0 CD2 F:HIS32 4.3 38.1 1.0 C3B F:BCL101 4.3 37.3 1.0 C3A F:BCL101 4.4 37.3 1.0 C3C F:BCL101 4.4 37.3 1.0 C2C F:BCL101 4.4 37.3 1.0 C2A F:BCL101 4.5 37.3 1.0 CMB E:BCL102 4.7 39.5 1.0 CMA F:BCL101 4.8 37.3 1.0 C2B E:BCL102 4.9 39.5 1.0 CBD F:BCL101 4.9 37.3 1.0

Magnesium binding site 6 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg101 b:36.9 occ:1.00 MG G:BCL101 0.0 36.9 1.0 ND G:BCL101 2.0 36.9 1.0 NB G:BCL101 2.0 36.9 1.0 NC G:BCL101 2.1 36.9 1.0 NA G:BCL101 2.2 36.9 1.0 NE2 G:HIS39 2.8 55.3 1.0 C4D G:BCL101 3.0 36.9 1.0 C1B G:BCL101 3.0 36.9 1.0 C4B G:BCL101 3.0 36.9 1.0 C1C G:BCL101 3.1 36.9 1.0 C1D G:BCL101 3.1 36.9 1.0 C4A G:BCL101 3.1 36.9 1.0 C4C G:BCL101 3.1 36.9 1.0 C1A G:BCL101 3.2 36.9 1.0 CD2 G:HIS39 3.2 55.3 1.0 CHC G:BCL101 3.4 36.9 1.0 CHB G:BCL101 3.4 36.9 1.0 CHA G:BCL101 3.4 36.9 1.0 CHD G:BCL101 3.5 36.9 1.0 CE1 G:HIS39 4.0 55.3 1.0 C2B G:BCL101 4.1 36.9 1.0 C3B G:BCL101 4.2 36.9 1.0 C3D G:BCL101 4.2 36.9 1.0 C2D G:BCL101 4.3 36.9 1.0 C2C G:BCL101 4.4 36.9 1.0 C3C G:BCL101 4.4 36.9 1.0 C3A G:BCL101 4.4 36.9 1.0 C2A G:BCL101 4.5 36.9 1.0 CMB I:BCL101 4.5 39.6 1.0 CG G:HIS39 4.5 55.3 1.0 ND1 G:HIS39 4.8 55.3 1.0 CBD G:BCL101 4.9 36.9 1.0 CMD F:BCL101 5.0 37.3 1.0 C2B I:BCL101 5.0 39.6 1.0

Magnesium binding site 7 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg101 b:39.6 occ:1.00 MG I:BCL101 0.0 39.6 1.0 ND I:BCL101 2.0 39.6 1.0 NB I:BCL101 2.0 39.6 1.0 NC I:BCL101 2.1 39.6 1.0 NA I:BCL101 2.2 39.6 1.0 C4D I:BCL101 3.0 39.6 1.0 C1B I:BCL101 3.0 39.6 1.0 C4B I:BCL101 3.1 39.6 1.0 NE2 I:HIS32 3.1 35.1 1.0 C1D I:BCL101 3.1 39.6 1.0 C4A I:BCL101 3.1 39.6 1.0 C1C I:BCL101 3.1 39.6 1.0 C4C I:BCL101 3.1 39.6 1.0 C1A I:BCL101 3.2 39.6 1.0 CHB I:BCL101 3.3 39.6 1.0 CHC I:BCL101 3.4 39.6 1.0 CHA I:BCL101 3.4 39.6 1.0 CHD I:BCL101 3.4 39.6 1.0 CE1 I:HIS32 4.0 35.1 1.0 CD2 I:HIS32 4.0 35.1 1.0 CBB G:BCL101 4.1 36.9 1.0 C3D I:BCL101 4.2 39.6 1.0 C2B I:BCL101 4.2 39.6 1.0 C2D I:BCL101 4.2 39.6 1.0 C3C I:BCL101 4.3 39.6 1.0 C3B I:BCL101 4.3 39.6 1.0 C2C I:BCL101 4.3 39.6 1.0 C3A I:BCL101 4.4 39.6 1.0 C2A I:BCL101 4.5 39.6 1.0 CMB G:BCL101 4.7 36.9 1.0 C2B G:BCL101 4.8 36.9 1.0 CBD I:BCL101 4.9 39.6 1.0 C3B G:BCL101 5.0 36.9 1.0 CMC I:BCL101 5.0 39.6 1.0

Magnesium binding site 8 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg101 b:69.5 occ:1.00 MG J:BCL101 0.0 69.5 1.0 ND J:BCL101 2.0 69.5 1.0 NB J:BCL101 2.0 69.5 1.0 NC J:BCL101 2.1 69.5 1.0 NA J:BCL101 2.2 69.5 1.0 NE2 J:HIS39 2.8 52.1 1.0 C4D J:BCL101 3.0 69.5 1.0 C1B J:BCL101 3.0 69.5 1.0 C4B J:BCL101 3.0 69.5 1.0 C1C J:BCL101 3.1 69.5 1.0 C1D J:BCL101 3.1 69.5 1.0 C4A J:BCL101 3.1 69.5 1.0 C4C J:BCL101 3.1 69.5 1.0 C1A J:BCL101 3.2 69.5 1.0 CD2 J:HIS39 3.2 52.1 1.0 CHC J:BCL101 3.4 69.5 1.0 CHB J:BCL101 3.4 69.5 1.0 CHA J:BCL101 3.4 69.5 1.0 CHD J:BCL101 3.5 69.5 1.0 CE1 J:HIS39 4.0 52.1 1.0 CBB K:BCL101 4.1 69.5 1.0 C2B J:BCL101 4.1 69.5 1.0 C3B J:BCL101 4.2 69.5 1.0 C3D J:BCL101 4.2 69.5 1.0 C2D J:BCL101 4.3 69.5 1.0 C2C J:BCL101 4.4 69.5 1.0 C3C J:BCL101 4.4 69.5 1.0 C3A J:BCL101 4.4 69.5 1.0 C2A J:BCL101 4.5 69.5 1.0 CG J:HIS39 4.5 52.1 1.0 ND1 J:HIS39 4.8 52.1 1.0 CAB K:BCL101 4.9 69.5 1.0 CBD J:BCL101 4.9 69.5 1.0

Magnesium binding site 9 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg101 b:69.5 occ:1.00 MG K:BCL101 0.0 69.5 1.0 ND K:BCL101 2.0 69.5 1.0 NB K:BCL101 2.0 69.5 1.0 NC K:BCL101 2.1 69.5 1.0 NA K:BCL101 2.1 69.5 1.0 C4D K:BCL101 2.9 69.5 1.0 NE2 K:HIS32 3.0 33.7 1.0 C4B K:BCL101 3.1 69.5 1.0 C1B K:BCL101 3.1 69.5 1.0 C1C K:BCL101 3.1 69.5 1.0 C1D K:BCL101 3.1 69.5 1.0 C4A K:BCL101 3.1 69.5 1.0 C4C K:BCL101 3.1 69.5 1.0 C1A K:BCL101 3.2 69.5 1.0 CHC K:BCL101 3.3 69.5 1.0 CHA K:BCL101 3.4 69.5 1.0 CHB K:BCL101 3.4 69.5 1.0 CHD K:BCL101 3.5 69.5 1.0 CE1 K:HIS32 3.9 33.7 1.0 CD2 K:HIS32 4.0 33.7 1.0 C3D K:BCL101 4.1 69.5 1.0 CBB J:BCL101 4.2 69.5 1.0 C2D K:BCL101 4.2 69.5 1.0 C2B K:BCL101 4.2 69.5 1.0 C3B K:BCL101 4.3 69.5 1.0 C3A K:BCL101 4.3 69.5 1.0 C2C K:BCL101 4.4 69.5 1.0 C2A K:BCL101 4.4 69.5 1.0 C3C K:BCL101 4.5 69.5 1.0 CMA K:BCL101 4.5 69.5 1.0 CMB J:BCL101 4.8 69.5 1.0 CBD K:BCL101 4.8 69.5 1.0 C2B J:BCL101 4.9 69.5 1.0

Magnesium binding site 10 out of 38 in the Rba Sphaeroides Pufx-Ko Rc-LH1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Rba Sphaeroides Pufx-Ko Rc-LH1 within 5.0Å range: probe atom residue distance (Å) B Occ N:Mg101 b:69.5 occ:1.00 MG N:BCL101 0.0 69.5 1.0 ND N:BCL101 2.0 69.5 1.0 NB N:BCL101 2.0 69.5 1.0 NC N:BCL101 2.1 69.5 1.0 NA N:BCL101 2.2 69.5 1.0 NE2 N:HIS39 2.8 60.1 1.0 C4D N:BCL101 3.0 69.5 1.0 C1B N:BCL101 3.0 69.5 1.0 C4B N:BCL101 3.0 69.5 1.0 C1C N:BCL101 3.1 69.5 1.0 C1D N:BCL101 3.1 69.5 1.0 C4A N:BCL101 3.1 69.5 1.0 C4C N:BCL101 3.1 69.5 1.0 C1A N:BCL101 3.2 69.5 1.0 CD2 N:HIS39 3.2 60.1 1.0 CHC N:BCL101 3.4 69.5 1.0 CHB N:BCL101 3.4 69.5 1.0 CHA N:BCL101 3.4 69.5 1.0 CHD N:BCL101 3.5 69.5 1.0 CE1 N:HIS39 4.0 60.1 1.0 C2B N:BCL101 4.1 69.5 1.0 C3B N:BCL101 4.2 69.5 1.0 C3D N:BCL101 4.2 69.5 1.0 CMB O:BCL101 4.2 69.5 1.0 C2D N:BCL101 4.3 69.5 1.0 CBB O:BCL101 4.3 69.5 1.0 C2C N:BCL101 4.4 69.5 1.0 C3C N:BCL101 4.4 69.5 1.0 C3A N:BCL101 4.4 69.5 1.0 C2A N:BCL101 4.5 69.5 1.0 CG N:HIS39 4.5 60.1 1.0 C2B O:BCL101 4.7 69.5 1.0 ND1 N:HIS39 4.8 60.1 1.0 CBD N:BCL101 4.9 69.5 1.0 CAB O:BCL101 5.0 69.5 1.0

P.Cao, L.Bracun, A.Yamagata, B.M.Christianson, T.Negami, B.Zou, T.Terada, D.P.Canniffe, M.Shirouzu, M.Li, L.N.Liu. Structural Basis For the Assembly and Quinone Transport Mechanisms of the Dimeric Photosynthetic Rc-LH1 Supercomplex. Nat Commun V. 13 1977 2022.
ISSN: ESSN 2041-1723
PubMed: 35418573
DOI: 10.1038/S41467-022-29563-3