Magnesium in PDB 7vvr: Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K

All present enzymatic activity of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K:
7.1.1.9;

The structure of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K, PDB code: 7vvr was solved by A.Shimada, T.Tsukihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.95 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	182.307, 204.706, 177.379, 90, 90, 90
R / Rfree (%)	15.2 / 17.6

The structure of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K also contains other interesting chemical elements:

Sodium	(Na)	2 atoms
Zinc	(Zn)	2 atoms
Copper	(Cu)	6 atoms
Iron	(Fe)	4 atoms

The binding sites of Magnesium atom in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K (pdb code 7vvr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K, PDB code: 7vvr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg604 b:19.8 occ:1.00 OD2 A:ASP369 2.0 22.1 1.0 O B:HOH475 2.1 21.7 1.0 OE1 B:GLU198 2.1 24.3 1.0 O B:HOH465 2.1 22.4 1.0 O B:HOH523 2.1 22.2 1.0 NE2 A:HIS368 2.2 21.8 1.0 CE1 A:HIS368 3.1 22.7 1.0 CD2 A:HIS368 3.2 22.9 1.0 CG A:ASP369 3.2 23.7 1.0 CD B:GLU198 3.3 27.1 1.0 O B:SER197 3.9 23.9 1.0 O A:HOH889 4.0 22.6 1.0 CB A:ASP369 4.0 23.5 1.0 OE2 B:GLU198 4.1 25.4 1.0 O A:HOH711 4.1 22.1 1.0 OD1 A:ASP369 4.2 24.3 1.0 O B:HOH460 4.2 25.1 1.0 ND1 A:HIS368 4.3 22.6 1.0 CG A:HIS368 4.3 21.1 1.0 O A:HOH768 4.3 22.2 1.0 CG B:GLU198 4.3 23.0 1.0 OD2 B:ASP173 4.4 23.2 1.0 CB B:GLU198 4.4 23.2 1.0 OD1 B:ASP173 4.4 24.2 1.0 OG1 A:THR294 4.5 24.9 1.0 O A:HOH804 4.5 21.4 1.0 O B:HOH439 4.6 20.1 0.6 CA B:GLU198 4.6 24.9 1.0 O A:HOH861 4.7 21.7 1.0 CG B:ASP173 4.8 23.7 1.0 C B:SER197 5.0 24.4 1.0

Magnesium binding site 2 out of 2 in the Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K within 5.0Å range: probe atom residue distance (Å) B Occ N:Mg604 b:23.6 occ:1.00 OD2 N:ASP369 2.0 26.4 1.0 O O:HOH473 2.0 24.7 1.0 OE1 O:GLU198 2.1 28.5 1.0 O O:HOH458 2.1 25.8 1.0 O O:HOH516 2.1 24.8 1.0 NE2 N:HIS368 2.2 25.9 1.0 CE1 N:HIS368 3.1 25.9 1.0 CD2 N:HIS368 3.2 26.5 1.0 CG N:ASP369 3.3 23.9 1.0 CD O:GLU198 3.3 26.8 1.0 O O:SER197 3.9 28.1 1.0 O N:HOH899 4.0 25.8 1.0 CB N:ASP369 4.1 29.9 1.0 OE2 O:GLU198 4.1 29.6 1.0 O N:HOH715 4.1 24.6 1.0 O O:HOH433 4.2 26.9 1.0 OD1 N:ASP369 4.2 26.4 1.0 ND1 N:HIS368 4.3 23.6 1.0 CG N:HIS368 4.3 23.8 1.0 O N:HOH781 4.3 24.3 1.0 OD2 O:ASP173 4.3 25.8 1.0 CG O:GLU198 4.3 25.1 1.0 CB O:GLU198 4.4 25.1 1.0 OD1 O:ASP173 4.5 27.3 1.0 OG1 N:THR294 4.5 26.4 1.0 O N:HOH859 4.6 25.7 1.0 O O:HOH438 4.6 23.8 0.6 O N:HOH871 4.6 24.2 1.0 CA O:GLU198 4.6 29.0 1.0 CG O:ASP173 4.8 26.7 1.0 C O:SER197 5.0 30.0 1.0

A.Shimada, T.Tsukihara. Bovine Cytochrome C Oxidese in Cn-Bound Mixed Valence State at 50 K To Be Published.