Magnesium in PDB 7vvz: NUA4 Bound to the Nucleosome

The binding sites of Magnesium atom in the NUA4 Bound to the Nucleosome (pdb code 7vvz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the NUA4 Bound to the Nucleosome, PDB code: 7vvz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the NUA4 Bound to the Nucleosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of NUA4 Bound to the Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1001 b:61.2 occ:1.00 O2B F:ATP1002 2.6 32.7 1.0 O1G F:ATP1002 2.7 32.7 1.0 O2G F:ATP1002 3.2 32.7 1.0 PG F:ATP1002 3.5 32.7 1.0 PB F:ATP1002 3.8 32.7 1.0 OD2 F:ASP159 4.0 37.5 1.0 O3B F:ATP1002 4.0 32.7 1.0 OD1 F:ASP159 4.2 37.5 1.0 CG F:ASP159 4.3 37.5 1.0 O1A F:ATP1002 4.7 32.7 1.0 O3A F:ATP1002 4.8 32.7 1.0 O3G F:ATP1002 4.9 32.7 1.0 O1B F:ATP1002 4.9 32.7 1.0

Magnesium binding site 2 out of 2 in the NUA4 Bound to the Nucleosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of NUA4 Bound to the Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg501 b:76.0 occ:1.00 O3G G:ATP502 2.7 106.2 1.0 O1G G:ATP502 2.8 106.2 1.0 O1B G:ATP502 2.8 106.2 1.0 PG G:ATP502 3.2 106.2 1.0 OE1 G:GLN137 3.7 51.2 1.0 PB G:ATP502 3.9 106.2 1.0 O3B G:ATP502 3.9 106.2 1.0 CD G:GLN137 4.0 51.2 1.0 NE2 G:GLN137 4.0 51.2 1.0 OD1 G:ASP154 4.1 62.1 1.0 O2A G:ATP502 4.2 106.2 1.0 O3A G:ATP502 4.4 106.2 1.0 OD1 G:ASP11 4.5 61.0 1.0 OD2 G:ASP11 4.5 61.0 1.0 O2G G:ATP502 4.6 106.2 1.0 CA G:GLY13 4.6 84.0 1.0 OD2 G:ASP154 4.7 62.1 1.0 CG2 G:VAL339 4.7 49.3 1.0 CG G:ASP154 4.8 62.1 1.0 PA G:ATP502 4.9 106.2 1.0 CG G:GLN137 4.9 51.2 1.0 CG G:ASP11 5.0 61.0 1.0 CB G:GLN137 5.0 51.2 1.0

K.Qu, K.Chen, H.Wang, X.Li, Z.Chen. Structure of the NUA4 Acetyltransferase Complex Bound to the Nucleosome. Nature V. 610 569 2022.
ISSN: ESSN 1476-4687
PubMed: 36198799
DOI: 10.1038/S41586-022-05303-X