Magnesium in PDB 7vw3: Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex (pdb code 7vw3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex, PDB code: 7vw3:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:219.2 occ:1.00 OD2 A:ASP556 2.9 0.0 1.0 CG A:ASP556 4.0 0.0 1.0 OD1 A:ASP556 4.5 0.0 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:118.2 occ:1.00 OD2 A:ASP704 3.7 180.9 1.0 CB A:ASP704 4.2 180.9 1.0 CG A:ASP704 4.4 180.9 1.0 CB A:HIS700 4.5 160.1 1.0 ND1 A:HIS701 4.5 146.9 1.0 CA A:HIS701 4.6 146.9 1.0 C A:HIS700 4.6 160.1 1.0 OP1 D:DA35 4.6 243.3 1.0 O A:HIS700 4.6 160.1 1.0 N A:HIS701 4.6 146.9 1.0 MG A:MG1103 4.7 171.1 1.0 CE1 A:HIS701 4.8 146.9 1.0 CG A:HIS701 4.9 146.9 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of SACAS9-Sgrna-Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1103 b:171.1 occ:1.00 NZ A:LYS482 2.5 215.4 1.0 OE1 A:GLU477 2.9 180.9 1.0 OP1 D:DA35 3.2 243.3 1.0 CE A:LYS482 3.6 215.4 1.0 OD2 A:ASP704 3.7 180.9 1.0 CD A:GLU477 3.7 180.9 1.0 OE2 A:GLU477 4.1 180.9 1.0 O A:LEU478 4.2 183.5 1.0 CD A:LYS482 4.3 215.4 1.0 P D:DA35 4.6 243.3 1.0 CG A:LYS482 4.7 215.4 1.0 MG A:MG1102 4.7 118.2 1.0 CG A:ASP704 4.8 180.9 1.0 CG A:GLU477 4.8 180.9 1.0

W.Du, H.Zhu, J.Qian, D.Xue, S.Zheng, Q.Huang. Full-Length Model of SACAS9-Sgrna-Dna Complex in Cleavage State. Int J Mol Sci V. 24 2023.
ISSN: ESSN 1422-0067
PubMed: 36674715
DOI: 10.3390/IJMS24021204