Magnesium in PDB 7vzr: Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Other elements in 7vzr:
The structure of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
26;
Binding sites:
The binding sites of Magnesium atom in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
(pdb code 7vzr). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 26 binding sites of Magnesium where determined in the
Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form), PDB code: 7vzr:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 1 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg902
b:44.0
occ:1.00
|
MG
|
A:BCL902
|
0.0
|
44.0
|
1.0
|
NC
|
A:BCL902
|
2.0
|
44.0
|
1.0
|
ND
|
A:BCL902
|
2.0
|
44.0
|
1.0
|
NA
|
A:BCL902
|
2.1
|
44.0
|
1.0
|
NB
|
A:BCL902
|
2.1
|
44.0
|
1.0
|
NE2
|
A:HIS31
|
2.4
|
4.0
|
1.0
|
C4D
|
A:BCL902
|
2.9
|
44.0
|
1.0
|
C1A
|
A:BCL902
|
2.9
|
44.0
|
1.0
|
C4C
|
A:BCL902
|
3.0
|
44.0
|
1.0
|
C1C
|
A:BCL902
|
3.0
|
44.0
|
1.0
|
C4A
|
A:BCL902
|
3.0
|
44.0
|
1.0
|
C1B
|
A:BCL902
|
3.1
|
44.0
|
1.0
|
C1D
|
A:BCL902
|
3.1
|
44.0
|
1.0
|
C4B
|
A:BCL902
|
3.1
|
44.0
|
1.0
|
CE1
|
A:HIS31
|
3.2
|
4.0
|
1.0
|
CHB
|
A:BCL902
|
3.3
|
44.0
|
1.0
|
CHA
|
A:BCL902
|
3.3
|
44.0
|
1.0
|
CHC
|
A:BCL902
|
3.4
|
44.0
|
1.0
|
CHD
|
A:BCL902
|
3.4
|
44.0
|
1.0
|
CD2
|
A:HIS31
|
3.5
|
4.0
|
1.0
|
C3D
|
A:BCL902
|
4.0
|
44.0
|
1.0
|
CMB
|
A:CLA912
|
4.2
|
20.0
|
1.0
|
C2A
|
A:BCL902
|
4.2
|
44.0
|
1.0
|
C2D
|
A:BCL902
|
4.2
|
44.0
|
1.0
|
C3C
|
A:BCL902
|
4.3
|
44.0
|
1.0
|
C2C
|
A:BCL902
|
4.3
|
44.0
|
1.0
|
C3A
|
A:BCL902
|
4.3
|
44.0
|
1.0
|
C2B
|
A:BCL902
|
4.3
|
44.0
|
1.0
|
C3B
|
A:BCL902
|
4.3
|
44.0
|
1.0
|
ND1
|
A:HIS31
|
4.4
|
4.0
|
1.0
|
CG
|
A:HIS31
|
4.6
|
4.0
|
1.0
|
CE1
|
A:PHE304
|
4.6
|
4.0
|
1.0
|
C14
|
A:LYC913
|
4.7
|
60.1
|
1.0
|
CBD
|
A:BCL902
|
4.8
|
44.0
|
1.0
|
C11
|
A:LYC913
|
5.0
|
66.0
|
1.0
|
|
Magnesium binding site 2 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 2 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg903
b:44.0
occ:1.00
|
MG
|
A:BCL903
|
0.0
|
44.0
|
1.0
|
NB
|
A:BCL903
|
2.0
|
44.0
|
1.0
|
NC
|
A:BCL903
|
2.1
|
44.0
|
1.0
|
NA
|
A:BCL903
|
2.1
|
44.0
|
1.0
|
ND
|
A:BCL903
|
2.1
|
44.0
|
1.0
|
NE2
|
A:HIS305
|
2.4
|
4.0
|
1.0
|
C1A
|
A:BCL903
|
2.9
|
44.0
|
1.0
|
C4D
|
A:BCL903
|
2.9
|
44.0
|
1.0
|
C4B
|
A:BCL903
|
3.0
|
44.0
|
1.0
|
C4C
|
A:BCL903
|
3.0
|
44.0
|
1.0
|
C1B
|
A:BCL903
|
3.0
|
44.0
|
1.0
|
C1C
|
A:BCL903
|
3.0
|
44.0
|
1.0
|
C4A
|
A:BCL903
|
3.0
|
44.0
|
1.0
|
C1D
|
A:BCL903
|
3.2
|
44.0
|
1.0
|
CE1
|
A:HIS305
|
3.2
|
4.0
|
1.0
|
C9
|
A:UNL927
|
3.2
|
20.0
|
1.0
|
CHC
|
A:BCL903
|
3.3
|
44.0
|
1.0
|
CHA
|
A:BCL903
|
3.4
|
44.0
|
1.0
|
CHB
|
A:BCL903
|
3.4
|
44.0
|
1.0
|
CD2
|
A:HIS305
|
3.5
|
4.0
|
1.0
|
CHD
|
A:BCL903
|
3.5
|
44.0
|
1.0
|
C8
|
A:UNL927
|
3.7
|
20.0
|
1.0
|
C3D
|
A:BCL903
|
4.1
|
44.0
|
1.0
|
C3B
|
A:BCL903
|
4.2
|
44.0
|
1.0
|
C2A
|
A:BCL903
|
4.2
|
44.0
|
1.0
|
C2B
|
A:BCL903
|
4.3
|
44.0
|
1.0
|
C3C
|
A:BCL903
|
4.3
|
44.0
|
1.0
|
C2C
|
A:BCL903
|
4.3
|
44.0
|
1.0
|
C3A
|
A:BCL903
|
4.3
|
44.0
|
1.0
|
C2D
|
A:BCL903
|
4.3
|
44.0
|
1.0
|
ND1
|
A:HIS305
|
4.3
|
4.0
|
1.0
|
CG
|
A:HIS305
|
4.5
|
4.0
|
1.0
|
CBD
|
A:BCL903
|
4.8
|
44.0
|
1.0
|
O1A
|
A:BCL903
|
4.9
|
44.0
|
1.0
|
CG2
|
A:THR309
|
5.0
|
4.0
|
1.0
|
|
Magnesium binding site 3 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 3 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg904
b:80.9
occ:1.00
|
MG
|
A:BCL904
|
0.0
|
80.9
|
1.0
|
ND
|
A:BCL904
|
2.0
|
80.9
|
1.0
|
NB
|
A:BCL904
|
2.0
|
80.9
|
1.0
|
NA
|
A:BCL904
|
2.1
|
80.9
|
1.0
|
NC
|
A:BCL904
|
2.1
|
80.9
|
1.0
|
NE2
|
A:HIS132
|
2.3
|
4.0
|
1.0
|
C4D
|
A:BCL904
|
2.9
|
80.9
|
1.0
|
C1A
|
A:BCL904
|
3.0
|
80.9
|
1.0
|
C4B
|
A:BCL904
|
3.0
|
80.9
|
1.0
|
C4A
|
A:BCL904
|
3.0
|
80.9
|
1.0
|
C1B
|
A:BCL904
|
3.0
|
80.9
|
1.0
|
C1C
|
A:BCL904
|
3.1
|
80.9
|
1.0
|
C4C
|
A:BCL904
|
3.1
|
80.9
|
1.0
|
CE1
|
A:HIS132
|
3.1
|
4.0
|
1.0
|
C1D
|
A:BCL904
|
3.1
|
80.9
|
1.0
|
CHB
|
A:BCL904
|
3.3
|
80.9
|
1.0
|
CHC
|
A:BCL904
|
3.3
|
80.9
|
1.0
|
CHA
|
A:BCL904
|
3.4
|
80.9
|
1.0
|
CD2
|
A:HIS132
|
3.4
|
4.0
|
1.0
|
CHD
|
A:BCL904
|
3.5
|
80.9
|
1.0
|
C1
|
A:UNL924
|
4.0
|
20.0
|
1.0
|
C3D
|
A:BCL904
|
4.0
|
80.9
|
1.0
|
C2
|
A:UNL924
|
4.1
|
20.0
|
1.0
|
C2A
|
A:BCL904
|
4.2
|
80.9
|
1.0
|
C3B
|
A:BCL904
|
4.2
|
80.9
|
1.0
|
ND1
|
A:HIS132
|
4.3
|
4.0
|
1.0
|
C2B
|
A:BCL904
|
4.3
|
80.9
|
1.0
|
C3A
|
A:BCL904
|
4.3
|
80.9
|
1.0
|
C2D
|
A:BCL904
|
4.3
|
80.9
|
1.0
|
C2C
|
A:BCL904
|
4.4
|
80.9
|
1.0
|
C3C
|
A:BCL904
|
4.4
|
80.9
|
1.0
|
CG
|
A:HIS132
|
4.5
|
4.0
|
1.0
|
CAA
|
A:BCL904
|
4.8
|
80.9
|
1.0
|
CBD
|
A:BCL904
|
4.8
|
80.9
|
1.0
|
C4
|
A:UNL924
|
4.9
|
20.0
|
1.0
|
CMA
|
A:BCL904
|
5.0
|
80.9
|
1.0
|
|
Magnesium binding site 4 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 4 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg905
b:52.7
occ:1.00
|
MG
|
A:BCL905
|
0.0
|
52.7
|
1.0
|
NA
|
A:BCL905
|
2.0
|
52.7
|
1.0
|
NC
|
A:BCL905
|
2.0
|
52.7
|
1.0
|
ND
|
A:BCL905
|
2.0
|
52.7
|
1.0
|
NB
|
A:BCL905
|
2.1
|
52.7
|
1.0
|
NE2
|
A:HIS199
|
2.3
|
4.0
|
1.0
|
C1A
|
A:BCL905
|
2.9
|
52.7
|
1.0
|
C4D
|
A:BCL905
|
2.9
|
52.7
|
1.0
|
C4C
|
A:BCL905
|
2.9
|
52.7
|
1.0
|
C1C
|
A:BCL905
|
2.9
|
52.7
|
1.0
|
C4B
|
A:BCL905
|
3.0
|
52.7
|
1.0
|
C4A
|
A:BCL905
|
3.0
|
52.7
|
1.0
|
C1B
|
A:BCL905
|
3.1
|
52.7
|
1.0
|
C1D
|
A:BCL905
|
3.1
|
52.7
|
1.0
|
CE1
|
A:HIS199
|
3.1
|
4.0
|
1.0
|
CBC
|
A:BCL904
|
3.2
|
80.9
|
1.0
|
CHC
|
A:BCL905
|
3.2
|
52.7
|
1.0
|
CD2
|
A:HIS199
|
3.2
|
4.0
|
1.0
|
CHA
|
A:BCL905
|
3.3
|
52.7
|
1.0
|
CHB
|
A:BCL905
|
3.4
|
52.7
|
1.0
|
CHD
|
A:BCL905
|
3.4
|
52.7
|
1.0
|
C3D
|
A:BCL905
|
4.1
|
52.7
|
1.0
|
C2A
|
A:BCL905
|
4.1
|
52.7
|
1.0
|
ND1
|
A:HIS199
|
4.2
|
4.0
|
1.0
|
C2C
|
A:BCL905
|
4.2
|
52.7
|
1.0
|
C3B
|
A:BCL905
|
4.3
|
52.7
|
1.0
|
C3C
|
A:BCL905
|
4.3
|
52.7
|
1.0
|
CG
|
A:HIS199
|
4.3
|
4.0
|
1.0
|
C3A
|
A:BCL905
|
4.3
|
52.7
|
1.0
|
C2B
|
A:BCL905
|
4.3
|
52.7
|
1.0
|
CAA
|
A:BCL905
|
4.4
|
52.7
|
1.0
|
C2D
|
A:BCL905
|
4.4
|
52.7
|
1.0
|
CAC
|
A:BCL904
|
4.6
|
80.9
|
1.0
|
CE2
|
A:PHE28
|
4.7
|
4.0
|
1.0
|
CD2
|
A:PHE28
|
4.7
|
4.0
|
1.0
|
CBD
|
A:BCL905
|
4.8
|
52.7
|
1.0
|
CB
|
A:ALA195
|
4.9
|
4.0
|
1.0
|
|
Magnesium binding site 5 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 5 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg906
b:44.0
occ:1.00
|
MG
|
A:BCL906
|
0.0
|
44.0
|
1.0
|
NB
|
A:BCL906
|
2.0
|
44.0
|
1.0
|
NA
|
A:BCL906
|
2.1
|
44.0
|
1.0
|
NC
|
A:BCL906
|
2.1
|
44.0
|
1.0
|
ND
|
A:BCL906
|
2.1
|
44.0
|
1.0
|
OE1
|
A:GLU266
|
2.1
|
4.0
|
1.0
|
C1B
|
A:BCL906
|
2.9
|
44.0
|
1.0
|
C4B
|
A:BCL906
|
3.0
|
44.0
|
1.0
|
C4A
|
A:BCL906
|
3.0
|
44.0
|
1.0
|
C1A
|
A:BCL906
|
3.0
|
44.0
|
1.0
|
C4D
|
A:BCL906
|
3.0
|
44.0
|
1.0
|
C4C
|
A:BCL906
|
3.0
|
44.0
|
1.0
|
C1C
|
A:BCL906
|
3.1
|
44.0
|
1.0
|
CD
|
A:GLU266
|
3.1
|
4.0
|
1.0
|
C1D
|
A:BCL906
|
3.2
|
44.0
|
1.0
|
CHB
|
A:BCL906
|
3.2
|
44.0
|
1.0
|
CHC
|
A:BCL906
|
3.4
|
44.0
|
1.0
|
CHA
|
A:BCL906
|
3.4
|
44.0
|
1.0
|
CHD
|
A:BCL906
|
3.4
|
44.0
|
1.0
|
OE2
|
A:GLU266
|
3.8
|
4.0
|
1.0
|
NH2
|
A:ARG65
|
4.0
|
4.0
|
1.0
|
CG
|
A:GLU266
|
4.0
|
4.0
|
1.0
|
C7
|
E:84Q101
|
4.0
|
20.0
|
1.0
|
C2B
|
A:BCL906
|
4.1
|
44.0
|
1.0
|
C3B
|
A:BCL906
|
4.1
|
44.0
|
1.0
|
C3D
|
A:BCL906
|
4.1
|
44.0
|
1.0
|
CB
|
A:GLU266
|
4.2
|
4.0
|
1.0
|
C3A
|
A:BCL906
|
4.2
|
44.0
|
1.0
|
C2A
|
A:BCL906
|
4.3
|
44.0
|
1.0
|
C3C
|
A:BCL906
|
4.3
|
44.0
|
1.0
|
C2C
|
A:BCL906
|
4.4
|
44.0
|
1.0
|
C6
|
E:84Q101
|
4.4
|
20.0
|
1.0
|
C2D
|
A:BCL906
|
4.4
|
44.0
|
1.0
|
C5
|
E:84Q101
|
4.6
|
20.0
|
1.0
|
C8
|
E:84Q101
|
4.7
|
20.0
|
1.0
|
CZ
|
A:ARG65
|
4.7
|
4.0
|
1.0
|
CBD
|
A:BCL906
|
4.8
|
44.0
|
1.0
|
NH1
|
A:ARG65
|
4.9
|
4.0
|
1.0
|
|
Magnesium binding site 6 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 6 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg907
b:52.7
occ:1.00
|
MG
|
A:BCL907
|
0.0
|
52.7
|
1.0
|
ND
|
A:BCL907
|
2.0
|
52.7
|
1.0
|
NC
|
A:BCL907
|
2.1
|
52.7
|
1.0
|
NA
|
A:BCL907
|
2.1
|
52.7
|
1.0
|
NB
|
A:BCL907
|
2.1
|
52.7
|
1.0
|
NE2
|
A:HIS307
|
2.4
|
4.0
|
1.0
|
C4D
|
A:BCL907
|
2.8
|
52.7
|
1.0
|
C1A
|
A:BCL907
|
2.9
|
52.7
|
1.0
|
C4A
|
A:BCL907
|
2.9
|
52.7
|
1.0
|
C1B
|
A:BCL907
|
3.0
|
52.7
|
1.0
|
C1C
|
A:BCL907
|
3.0
|
52.7
|
1.0
|
C4B
|
A:BCL907
|
3.0
|
52.7
|
1.0
|
C4C
|
A:BCL907
|
3.1
|
52.7
|
1.0
|
C1D
|
A:BCL907
|
3.1
|
52.7
|
1.0
|
CHB
|
A:BCL907
|
3.2
|
52.7
|
1.0
|
CHA
|
A:BCL907
|
3.3
|
52.7
|
1.0
|
CE1
|
A:HIS307
|
3.3
|
4.0
|
1.0
|
CHC
|
A:BCL907
|
3.3
|
52.7
|
1.0
|
CD2
|
A:HIS307
|
3.3
|
4.0
|
1.0
|
CHD
|
A:BCL907
|
3.5
|
52.7
|
1.0
|
C11
|
A:UNL920
|
3.7
|
20.0
|
1.0
|
C3D
|
A:BCL907
|
4.0
|
52.7
|
1.0
|
C10
|
A:UNL920
|
4.2
|
20.0
|
1.0
|
C2A
|
A:BCL907
|
4.2
|
52.7
|
1.0
|
C3A
|
A:BCL907
|
4.2
|
52.7
|
1.0
|
C2B
|
A:BCL907
|
4.3
|
52.7
|
1.0
|
C3B
|
A:BCL907
|
4.3
|
52.7
|
1.0
|
C2D
|
A:BCL907
|
4.3
|
52.7
|
1.0
|
C2C
|
A:BCL907
|
4.3
|
52.7
|
1.0
|
ND1
|
A:HIS307
|
4.4
|
4.0
|
1.0
|
C3C
|
A:BCL907
|
4.4
|
52.7
|
1.0
|
CG
|
A:HIS307
|
4.4
|
4.0
|
1.0
|
C9
|
A:UNL920
|
4.5
|
20.0
|
1.0
|
C12
|
A:UNL920
|
4.5
|
20.0
|
1.0
|
CD1
|
A:LEU196
|
4.6
|
4.0
|
1.0
|
CBD
|
A:BCL907
|
4.7
|
52.7
|
1.0
|
CAD
|
A:BCL907
|
5.0
|
52.7
|
1.0
|
|
Magnesium binding site 7 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 7 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg908
b:32.8
occ:1.00
|
MG
|
A:BCL908
|
0.0
|
32.8
|
1.0
|
NC
|
A:BCL908
|
2.0
|
32.8
|
1.0
|
NA
|
A:BCL908
|
2.0
|
32.8
|
1.0
|
NB
|
A:BCL908
|
2.0
|
32.8
|
1.0
|
ND
|
A:BCL908
|
2.0
|
32.8
|
1.0
|
ND2
|
A:ASN361
|
2.2
|
30.0
|
1.0
|
C4A
|
A:BCL908
|
2.9
|
32.8
|
1.0
|
C4D
|
A:BCL908
|
2.9
|
32.8
|
1.0
|
C4C
|
A:BCL908
|
2.9
|
32.8
|
1.0
|
C1C
|
A:BCL908
|
3.0
|
32.8
|
1.0
|
C1A
|
A:BCL908
|
3.0
|
32.8
|
1.0
|
C4B
|
A:BCL908
|
3.0
|
32.8
|
1.0
|
C1B
|
A:BCL908
|
3.0
|
32.8
|
1.0
|
C1D
|
A:BCL908
|
3.1
|
32.8
|
1.0
|
CHB
|
A:BCL908
|
3.3
|
32.8
|
1.0
|
CG
|
A:ASN361
|
3.3
|
30.0
|
1.0
|
CHC
|
A:BCL908
|
3.3
|
32.8
|
1.0
|
CHA
|
A:BCL908
|
3.4
|
32.8
|
1.0
|
CHD
|
A:BCL908
|
3.4
|
32.8
|
1.0
|
CB
|
A:ASN361
|
3.7
|
30.0
|
1.0
|
C2
|
A:BCL908
|
4.0
|
32.8
|
1.0
|
C3D
|
A:BCL908
|
4.1
|
32.8
|
1.0
|
C3C
|
A:BCL908
|
4.2
|
32.8
|
1.0
|
C3B
|
A:BCL908
|
4.2
|
32.8
|
1.0
|
C3A
|
A:BCL908
|
4.2
|
32.8
|
1.0
|
C2C
|
A:BCL908
|
4.2
|
32.8
|
1.0
|
OD1
|
A:ASN361
|
4.3
|
30.0
|
1.0
|
C2A
|
A:BCL908
|
4.3
|
32.8
|
1.0
|
C2B
|
A:BCL908
|
4.3
|
32.8
|
1.0
|
C2D
|
A:BCL908
|
4.3
|
32.8
|
1.0
|
O2A
|
A:BCL908
|
4.4
|
32.8
|
1.0
|
CMB
|
A:BCL909
|
4.6
|
32.4
|
1.0
|
CA
|
A:ASN361
|
4.7
|
4.0
|
1.0
|
C1
|
A:BCL908
|
4.8
|
32.8
|
1.0
|
CBD
|
A:BCL908
|
4.8
|
32.8
|
1.0
|
CMA
|
A:BCL908
|
4.9
|
32.8
|
1.0
|
C3
|
A:BCL908
|
5.0
|
32.8
|
1.0
|
|
Magnesium binding site 8 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 8 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg909
b:32.4
occ:1.00
|
MG
|
A:BCL909
|
0.0
|
32.4
|
1.0
|
ND
|
A:BCL909
|
2.0
|
32.4
|
1.0
|
NC
|
A:BCL909
|
2.1
|
32.4
|
1.0
|
NB
|
A:BCL909
|
2.1
|
32.4
|
1.0
|
NA
|
A:BCL909
|
2.2
|
32.4
|
1.0
|
NE2
|
A:HIS362
|
2.5
|
4.0
|
1.0
|
C4D
|
A:BCL909
|
2.9
|
32.4
|
1.0
|
C1C
|
A:BCL909
|
2.9
|
32.4
|
1.0
|
C4C
|
A:BCL909
|
2.9
|
32.4
|
1.0
|
C4B
|
A:BCL909
|
3.0
|
32.4
|
1.0
|
C1B
|
A:BCL909
|
3.0
|
32.4
|
1.0
|
C1D
|
A:BCL909
|
3.0
|
32.4
|
1.0
|
C4A
|
A:BCL909
|
3.1
|
32.4
|
1.0
|
C1A
|
A:BCL909
|
3.2
|
32.4
|
1.0
|
CHC
|
A:BCL909
|
3.2
|
32.4
|
1.0
|
CE1
|
A:HIS362
|
3.3
|
4.0
|
1.0
|
CHB
|
A:BCL909
|
3.3
|
32.4
|
1.0
|
CHD
|
A:BCL909
|
3.4
|
32.4
|
1.0
|
C14
|
A:BCL909
|
3.4
|
32.4
|
1.0
|
CHA
|
A:BCL909
|
3.4
|
32.4
|
1.0
|
CD2
|
A:HIS362
|
3.5
|
4.0
|
1.0
|
C3D
|
A:BCL909
|
4.0
|
32.4
|
1.0
|
C13
|
A:BCL909
|
4.1
|
32.4
|
1.0
|
C3B
|
A:BCL909
|
4.2
|
32.4
|
1.0
|
C2C
|
A:BCL909
|
4.2
|
32.4
|
1.0
|
C2D
|
A:BCL909
|
4.2
|
32.4
|
1.0
|
C3C
|
A:BCL909
|
4.2
|
32.4
|
1.0
|
C2B
|
A:BCL909
|
4.3
|
32.4
|
1.0
|
C3A
|
A:BCL909
|
4.4
|
32.4
|
1.0
|
C2A
|
A:BCL909
|
4.4
|
32.4
|
1.0
|
ND1
|
A:HIS362
|
4.5
|
4.0
|
1.0
|
C12
|
A:BCL909
|
4.5
|
32.4
|
1.0
|
CG
|
A:HIS362
|
4.6
|
4.0
|
1.0
|
CBD
|
A:BCL909
|
4.8
|
32.4
|
1.0
|
|
Magnesium binding site 9 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 9 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg910
b:20.0
occ:1.00
|
MG
|
A:CLA910
|
0.0
|
20.0
|
1.0
|
ND
|
A:CLA910
|
2.1
|
20.0
|
1.0
|
NA
|
A:CLA910
|
2.1
|
20.0
|
1.0
|
NB
|
A:CLA910
|
2.1
|
20.0
|
1.0
|
NC
|
A:CLA910
|
2.1
|
20.0
|
1.0
|
NZ
|
a:LYS722
|
2.4
|
4.0
|
1.0
|
C4A
|
A:CLA910
|
3.0
|
20.0
|
1.0
|
C4B
|
A:CLA910
|
3.0
|
20.0
|
1.0
|
C4D
|
A:CLA910
|
3.0
|
20.0
|
1.0
|
C1B
|
A:CLA910
|
3.0
|
20.0
|
1.0
|
C1A
|
A:CLA910
|
3.1
|
20.0
|
1.0
|
C4C
|
A:CLA910
|
3.1
|
20.0
|
1.0
|
C1D
|
A:CLA910
|
3.1
|
20.0
|
1.0
|
C1C
|
A:CLA910
|
3.1
|
20.0
|
1.0
|
CE
|
a:LYS722
|
3.2
|
4.0
|
1.0
|
CHB
|
A:CLA910
|
3.3
|
20.0
|
1.0
|
CHC
|
A:CLA910
|
3.4
|
20.0
|
1.0
|
CHD
|
A:CLA910
|
3.4
|
20.0
|
1.0
|
CZ
|
A:PHE788
|
3.5
|
4.0
|
1.0
|
CHA
|
A:CLA910
|
3.5
|
20.0
|
1.0
|
CD
|
a:LYS722
|
3.5
|
4.0
|
1.0
|
CE1
|
A:PHE788
|
3.6
|
4.0
|
1.0
|
CE2
|
A:PHE788
|
4.1
|
4.0
|
1.0
|
C3D
|
A:CLA910
|
4.1
|
20.0
|
1.0
|
CD1
|
A:PHE788
|
4.2
|
4.0
|
1.0
|
C3B
|
A:CLA910
|
4.2
|
20.0
|
1.0
|
C3A
|
A:CLA910
|
4.3
|
20.0
|
1.0
|
C2B
|
A:CLA910
|
4.3
|
20.0
|
1.0
|
C2D
|
A:CLA910
|
4.3
|
20.0
|
1.0
|
C2C
|
A:CLA910
|
4.4
|
20.0
|
1.0
|
C3C
|
A:CLA910
|
4.4
|
20.0
|
1.0
|
C2A
|
A:CLA910
|
4.4
|
20.0
|
1.0
|
CD2
|
A:PHE788
|
4.5
|
4.0
|
1.0
|
CG
|
A:PHE788
|
4.6
|
4.0
|
1.0
|
CG
|
a:LYS722
|
4.7
|
4.0
|
1.0
|
C4
|
a:2GO903
|
4.7
|
20.0
|
1.0
|
CMA
|
A:CLA910
|
5.0
|
20.0
|
1.0
|
|
Magnesium binding site 10 out
of 26 in 7vzr
Go back to
Magnesium Binding Sites List in 7vzr
Magnesium binding site 10 out
of 26 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Smaller Form) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg911
b:20.0
occ:1.00
|
MG
|
A:CLA911
|
0.0
|
20.0
|
1.0
|
NB
|
A:CLA911
|
2.1
|
20.0
|
1.0
|
ND
|
A:CLA911
|
2.1
|
20.0
|
1.0
|
NA
|
A:CLA911
|
2.1
|
20.0
|
1.0
|
NE2
|
A:HIS118
|
2.1
|
4.0
|
1.0
|
NC
|
A:CLA911
|
2.2
|
20.0
|
1.0
|
C4D
|
A:CLA911
|
2.9
|
20.0
|
1.0
|
C4B
|
A:CLA911
|
2.9
|
20.0
|
1.0
|
C4A
|
A:CLA911
|
3.0
|
20.0
|
1.0
|
CE1
|
A:HIS118
|
3.0
|
4.0
|
1.0
|
C1A
|
A:CLA911
|
3.0
|
20.0
|
1.0
|
C1B
|
A:CLA911
|
3.0
|
20.0
|
1.0
|
CD2
|
A:HIS118
|
3.1
|
4.0
|
1.0
|
C1C
|
A:CLA911
|
3.1
|
20.0
|
1.0
|
C4C
|
A:CLA911
|
3.2
|
20.0
|
1.0
|
C1D
|
A:CLA911
|
3.2
|
20.0
|
1.0
|
CHB
|
A:CLA911
|
3.3
|
20.0
|
1.0
|
CHC
|
A:CLA911
|
3.4
|
20.0
|
1.0
|
CHA
|
A:CLA911
|
3.4
|
20.0
|
1.0
|
CHD
|
A:CLA911
|
3.6
|
20.0
|
1.0
|
ND1
|
A:HIS118
|
4.1
|
4.0
|
1.0
|
C3D
|
A:CLA911
|
4.1
|
20.0
|
1.0
|
C3B
|
A:CLA911
|
4.2
|
20.0
|
1.0
|
CG
|
A:HIS118
|
4.2
|
4.0
|
1.0
|
C2B
|
A:CLA911
|
4.3
|
20.0
|
1.0
|
C3A
|
A:CLA911
|
4.3
|
20.0
|
1.0
|
C2A
|
A:CLA911
|
4.3
|
20.0
|
1.0
|
C2D
|
A:CLA911
|
4.4
|
20.0
|
1.0
|
C2C
|
A:CLA911
|
4.4
|
20.0
|
1.0
|
C3C
|
A:CLA911
|
4.5
|
20.0
|
1.0
|
C19
|
A:BCL909
|
4.7
|
32.4
|
1.0
|
CG2
|
A:ILE42
|
4.8
|
4.0
|
1.0
|
CBD
|
A:CLA911
|
4.8
|
20.0
|
1.0
|
|
Reference:
S.Dong,
G.Huang,
C.Wang,
J.Wang,
S.F.Sui,
X.Qin.
Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C Nat Commun V. 13 7745 2022.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-022-35460-6
Page generated: Thu Oct 3 10:59:38 2024
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