Magnesium in PDB 7w0d: DICER2-Loqspd-Dsrna Complex at Mid-Translocation State

All present enzymatic activity of DICER2-Loqspd-Dsrna Complex at Mid-Translocation State:
3.1.21.1; 3.1.26.3; 3.6.1.3;

The binding sites of Magnesium atom in the DICER2-Loqspd-Dsrna Complex at Mid-Translocation State (pdb code 7w0d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the DICER2-Loqspd-Dsrna Complex at Mid-Translocation State, PDB code: 7w0d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the DICER2-Loqspd-Dsrna Complex at Mid-Translocation State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of DICER2-Loqspd-Dsrna Complex at Mid-Translocation State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1801 b:107.6 occ:1.00 O3B A:ADP1802 2.1 124.3 1.0 O2B A:ADP1802 2.2 124.3 1.0 PB A:ADP1802 2.5 124.3 1.0 O2A A:ADP1802 2.6 124.3 1.0 O3A A:ADP1802 3.2 124.3 1.0 PA A:ADP1802 3.2 124.3 1.0 CG2 A:THR35 3.3 119.4 1.0 CB A:THR35 3.3 119.4 1.0 O1A A:ADP1802 3.6 124.3 1.0 O1B A:ADP1802 3.9 124.3 1.0 N A:THR35 4.1 119.4 1.0 NZ A:LYS34 4.2 123.5 1.0 OG1 A:THR35 4.3 119.4 1.0 CA A:THR35 4.3 119.4 1.0 OD1 A:ASP469 4.5 121.0 1.0 OE1 A:GLN73 4.6 108.6 1.0 O5' A:ADP1802 4.7 124.3 1.0 CG A:LYS34 4.8 123.5 1.0

Magnesium binding site 2 out of 2 in the DICER2-Loqspd-Dsrna Complex at Mid-Translocation State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of DICER2-Loqspd-Dsrna Complex at Mid-Translocation State within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1801 b:234.3 occ:1.00 O1B F:ADP1802 2.1 238.9 1.0 O2B F:ADP1802 2.4 238.9 1.0 O1A F:ADP1802 2.4 238.9 1.0 PB F:ADP1802 2.6 238.9 1.0 NZ F:LYS34 2.7 241.8 1.0 OD1 F:ASP469 3.4 217.8 1.0 PA F:ADP1802 3.5 238.9 1.0 OD2 F:ASP469 3.5 217.8 1.0 O3A F:ADP1802 3.5 238.9 1.0 CG F:ASP469 3.8 217.8 1.0 CE F:LYS34 3.8 241.8 1.0 CG F:LYS34 3.9 241.8 1.0 O3B F:ADP1802 4.0 238.9 1.0 OG1 F:THR35 4.0 259.9 1.0 O2A F:ADP1802 4.3 238.9 1.0 CD F:LYS34 4.5 241.8 1.0 N F:THR35 4.7 259.9 1.0 N F:LYS34 4.7 241.8 1.0 O5' F:ADP1802 4.7 238.9 1.0 CB F:THR35 4.9 259.9 1.0

S.Su, J.Wang, T.Deng, X.Yuan, J.He, N.Liu, X.Li, Y.Huang, H.W.Wang, J.Ma. Structural Insights Into Dsrna Processing By Drosophila Dicer-2-Loqs-Pd. Nature V. 607 399 2022.
ISSN: ESSN 1476-4687
PubMed: 35768513
DOI: 10.1038/S41586-022-04911-X