Magnesium in PDB 7whw: Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Detergent with Amppcp (E1-Atp State)

All present enzymatic activity of Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Detergent with Amppcp (E1-Atp State):
7.6.2.1;

The binding sites of Magnesium atom in the Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Detergent with Amppcp (E1-Atp State) (pdb code 7whw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Detergent with Amppcp (E1-Atp State), PDB code: 7whw:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Detergent with Amppcp (E1-Atp State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Detergent with Amppcp (E1-Atp State) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:42.4 occ:1.00 O3G A:ACP1601 2.1 100.6 1.0 OD2 A:ASP667 2.5 47.7 1.0 OD1 A:ASP1130 3.2 50.9 1.0 O A:ASP1130 3.2 50.9 1.0 N A:GLY670 3.4 50.1 1.0 PG A:ACP1601 3.5 100.6 1.0 CG A:ASP667 3.6 47.7 1.0 CA A:GLY670 3.6 50.1 1.0 OD1 A:ASN1133 3.7 70.2 1.0 ND2 A:ASN1133 3.9 70.2 1.0 C3B A:ACP1601 4.0 100.6 1.0 OG1 A:THR669 4.1 57.8 1.0 O1G A:ACP1601 4.2 100.6 1.0 OD1 A:ASP667 4.2 47.7 1.0 OD2 A:ASP1134 4.2 60.3 1.0 CG A:ASP1130 4.2 50.9 1.0 C A:ASP1130 4.2 50.9 1.0 CG A:ASN1133 4.2 70.2 1.0 C A:GLY670 4.6 50.1 1.0 N A:THR671 4.6 48.0 1.0 CB A:ASP667 4.6 47.7 1.0 C A:THR669 4.7 57.8 1.0 N A:ASP1130 4.7 50.9 1.0 O2G A:ACP1601 4.7 100.6 1.0 OG1 A:THR671 4.8 48.0 1.0 OD2 A:ASP1130 4.8 50.9 1.0 CA A:ASP1130 4.9 50.9 1.0 N A:THR669 4.9 57.8 1.0 CG A:ASP1134 5.0 60.3 1.0

J.Xu, Y.He, X.Wu, L.Li. Conformational Changes of A Phosphatidylcholine Flippase in Lipid Membranes. Cell Rep V. 38 10518 2022.
ISSN: ESSN 2211-1247
PubMed: 35294892
DOI: 10.1016/J.CELREP.2022.110518