Magnesium in PDB 7wi4: Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains

The structure of Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains (pdb code 7wi4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains, PDB code: 7wi4:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg703 b:78.3 occ:1.00 O2G A:ANP701 2.0 84.0 1.0 N3B A:ANP701 3.0 84.0 1.0 PG A:ANP701 3.0 84.0 1.0 O1A A:ANP701 3.0 84.0 1.0 OG1 A:THR199 3.8 95.0 1.0 O3G A:ANP701 4.0 84.0 1.0 CG2 A:THR199 4.0 95.0 1.0 O1G A:ANP701 4.1 84.0 1.0 PA A:ANP701 4.2 84.0 1.0 PB A:ANP701 4.3 84.0 1.0 O3A A:ANP701 4.4 84.0 1.0 CB A:LYS198 4.5 100.5 1.0 O2A A:ANP701 4.5 84.0 1.0 CB A:THR199 4.5 95.0 1.0 O2B A:ANP701 4.9 84.0 1.0 N A:THR199 4.9 95.0 1.0 CG A:LYS198 5.0 100.5 1.0

Magnesium binding site 2 out of 6 in the Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg703 b:93.1 occ:1.00 O3A D:ANP701 1.9 95.6 1.0 N3B D:ANP701 1.9 95.6 1.0 O1A D:ANP701 2.1 95.6 1.0 PA D:ANP701 2.2 95.6 1.0 PB D:ANP701 2.3 95.6 1.0 O2A D:ANP701 2.5 95.6 1.0 OG1 D:THR199 2.6 101.0 1.0 O2G D:ANP701 2.8 95.6 1.0 PG D:ANP701 2.8 95.6 1.0 O2B D:ANP701 3.3 95.6 1.0 O1B D:ANP701 3.5 95.6 1.0 O1G D:ANP701 3.6 95.6 1.0 O5' D:ANP701 3.7 95.6 1.0 CB D:THR199 3.8 101.0 1.0 N D:THR199 4.0 101.0 1.0 CG2 D:THR199 4.0 101.0 1.0 O3G D:ANP701 4.1 95.6 1.0 NH2 E:ARG309 4.3 117.4 1.0 CA D:THR199 4.4 101.0 1.0 N D:LYS198 4.6 98.7 1.0 CZ E:ARG309 4.7 117.4 1.0 C5' D:ANP701 4.7 95.6 1.0 CB D:LYS198 4.8 98.7 1.0 C D:LYS198 4.9 98.7 1.0 C D:THR199 4.9 101.0 1.0 NE E:ARG309 5.0 117.4 1.0

Magnesium binding site 3 out of 6 in the Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg703 b:79.2 occ:1.00 O2G E:ANP701 1.8 92.5 1.0 PG E:ANP701 3.3 92.5 1.0 OD2 E:ASP251 3.7 104.3 0.5 OD1 E:ASP251 3.8 104.3 0.5 O1G E:ANP701 4.0 92.5 1.0 N3B E:ANP701 4.1 92.5 1.0 OD2 E:ASP251 4.3 104.3 0.5 O3G E:ANP701 4.3 92.5 1.0 CG E:ASP251 4.4 104.3 0.5 CG E:ASP251 4.4 104.3 0.5 OD1 E:ASP251 4.4 104.3 0.5 OE1 F:GLN273 4.4 145.6 1.0 CG E:LYS198 4.6 97.5 1.0 CB E:LYS198 4.7 97.5 1.0 OD1 E:ASN298 4.8 102.3 1.0 ND2 E:ASN298 4.9 102.3 1.0

Magnesium binding site 4 out of 6 in the Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg703 b:55.7 occ:1.00 O2G F:ANP701 2.2 86.0 1.0 PG F:ANP701 3.2 86.0 1.0 N3B F:ANP701 3.3 86.0 1.0 O1G F:ANP701 4.1 86.0 1.0 CB F:LYS198 4.2 89.2 1.0 CG F:LYS198 4.3 89.2 1.0 O3G F:ANP701 4.4 86.0 1.0 OD2 F:ASP251 4.5 100.2 0.5 OD2 F:ASP251 4.5 100.2 0.5 O2A F:ANP701 4.9 86.0 1.0 PB F:ANP701 4.9 86.0 1.0

Magnesium binding site 5 out of 6 in the Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg703 b:70.8 occ:1.00 O B:ALA230 2.1 77.5 1.0 C B:ALA230 2.3 77.5 1.0 CB B:SER231 2.3 81.2 1.0 CA B:SER231 2.3 81.2 1.0 N B:SER231 2.4 81.2 1.0 OG B:SER231 3.4 81.2 1.0 CA B:ALA230 3.5 77.5 1.0 C B:SER231 3.9 81.2 1.0 N B:ALA230 4.4 77.5 1.0 N B:ARG232 4.5 93.0 1.0 CB B:ALA230 4.5 77.5 1.0 O B:SER231 4.7 81.2 1.0 CG2 B:VAL233 4.7 98.4 1.0

Magnesium binding site 6 out of 6 in the Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of E.Coli Ftsh Protease Cytosolic Domains within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg703 b:92.0 occ:1.00 O2A C:ANP701 1.9 92.5 1.0 N3B C:ANP701 1.9 92.5 1.0 OG1 C:THR199 1.9 101.7 1.0 O1A C:ANP701 2.2 92.5 1.0 PA C:ANP701 2.3 92.5 1.0 O3A C:ANP701 2.9 92.5 1.0 PB C:ANP701 2.9 92.5 1.0 CB C:THR199 3.1 101.7 1.0 CG2 C:THR199 3.2 101.7 1.0 PG C:ANP701 3.4 92.5 1.0 O1B C:ANP701 3.6 92.5 1.0 N C:THR199 3.6 101.7 1.0 O5' C:ANP701 3.7 92.5 1.0 O3G C:ANP701 3.9 92.5 1.0 CA C:THR199 3.9 101.7 1.0 O2G C:ANP701 4.0 92.5 1.0 O2B C:ANP701 4.2 92.5 1.0 O1G C:ANP701 4.5 92.5 1.0 C5' C:ANP701 4.5 92.5 1.0 C C:THR199 4.6 101.7 1.0 C C:LYS198 4.7 101.5 1.0 NH2 A:ARG309 4.7 115.3 1.0 N C:LYS198 4.8 101.5 1.0

Z.Qiao, T.Yokoyama, X.F.Yan, I.T.Beh, J.Shi, S.Basak, Y.Akiyama, Y.G.Gao. Cryo-Em Structure of the Entire Ftsh-Hflkc Aaa Protease Complex. Cell Rep V. 39 10890 2022.
ISSN: ESSN 2211-1247
PubMed: 35649372
DOI: 10.1016/J.CELREP.2022.110890