Atomistry » Magnesium » PDB 7w7u-7wkm » 7wid
Atomistry »
  Magnesium »
    PDB 7w7u-7wkm »
      7wid »

Magnesium in PDB 7wid: Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180

Enzymatic activity of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180

All present enzymatic activity of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180:
3.4.21.92;

Protein crystallography data

The structure of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180, PDB code: 7wid was solved by B.Y.Wei, J.H.Gan, C.-G.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 94.178, 126.385, 145.449, 90, 94.09, 90
R / Rfree (%) 19.7 / 20.6

Other elements in 7wid:

The structure of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 also contains other interesting chemical elements:

Fluorine (F) 42 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 (pdb code 7wid). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 13 binding sites of Magnesium where determined in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180, PDB code: 7wid:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 1 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:23.7
occ:1.00
 O A:HOH392 2.5 38.5 1.0
O A:ILE81 2.6 12.2 1.0
O A:PRO86 2.7 13.9 1.0
O A:HOH381 2.7 11.9 1.0
O A:ILE84 3.3 15.0 1.0
C A:ILE81 3.7 12.2 1.0
C A:PRO86 3.8 13.8 1.0
CG1 A:ILE84 3.9 14.9 1.0
O A:HOH377 4.1 25.9 1.0
CG2 A:VAL88 4.1 12.1 1.0
N A:VAL88 4.2 12.1 1.0
C A:ILE84 4.2 15.4 1.0
CG2 A:ILE81 4.2 11.8 1.0
CA A:ASP87 4.3 13.1 1.0
N A:ASP87 4.4 13.2 1.0
O A:LYS85 4.5 15.1 1.0
C A:ASP87 4.5 12.5 1.0
CA A:GLN82 4.5 13.4 1.0
N A:GLN82 4.6 12.7 1.0
CA A:ILE81 4.6 11.8 1.0
O A:HOH316 4.6 12.7 1.0
C A:LYS85 4.7 15.5 1.0
O A:GLN82 4.7 13.7 1.0
CD1 A:ILE84 4.7 15.2 1.0
C A:GLN82 4.7 13.8 1.0
CB A:VAL88 4.8 12.2 1.0
N A:ILE84 4.8 15.0 1.0
N A:PRO86 4.8 14.6 1.0
CA A:ILE84 4.9 15.1 1.0
CA A:PRO86 4.9 14.3 1.0

Magnesium binding site 2 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 2 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:22.5
occ:1.00
 O B:HOH347 2.4 26.4 1.0
O B:ILE81 2.6 13.5 1.0
O B:PRO86 2.8 14.0 1.0
O B:HOH399 2.8 10.9 1.0
O B:ILE84 3.2 14.2 1.0
O B:HOH382 3.5 39.8 1.0
C B:ILE81 3.7 13.4 1.0
C B:PRO86 3.9 14.0 1.0
CG1 B:ILE84 4.0 13.9 1.0
O B:HOH369 4.1 31.5 1.0
C B:ILE84 4.2 14.8 1.0
CG2 B:VAL88 4.2 12.2 1.0
N B:VAL88 4.3 12.6 1.0
CG2 B:ILE81 4.3 12.7 1.0
CA B:ASP87 4.3 13.8 1.0
O B:LYS85 4.4 15.0 1.0
CA B:GLN82 4.5 14.6 1.0
N B:ASP87 4.5 13.6 1.0
N B:GLN82 4.5 13.9 1.0
O B:GLN82 4.6 15.3 1.0
C B:LYS85 4.6 15.2 1.0
O B:HOH328 4.6 12.1 1.0
C B:ASP87 4.6 13.4 1.0
C B:GLN82 4.7 14.9 1.0
CA B:ILE81 4.7 12.8 1.0
CD1 B:ILE84 4.8 13.8 1.0
N B:ILE84 4.8 14.7 1.0
N B:PRO86 4.8 14.5 1.0
CA B:ILE84 4.9 14.5 1.0
CB B:VAL88 4.9 12.2 1.0
OE1 B:GLN82 5.0 16.2 1.0
CA B:PRO86 5.0 14.4 1.0

Magnesium binding site 3 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 3 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg202

b:24.3
occ:1.00
 O C:HOH384 2.6 36.5 1.0
O C:PRO86 2.6 18.4 1.0
O C:ILE81 2.7 15.9 1.0
O C:HOH378 2.7 15.1 1.0
O C:ILE84 3.3 20.7 1.0
C C:PRO86 3.7 18.2 1.0
C C:ILE81 3.8 16.4 1.0
CG1 C:ILE84 4.0 20.1 1.0
O C:HOH335 4.0 25.0 1.0
CG2 C:VAL88 4.1 16.1 1.0
N C:VAL88 4.1 16.5 1.0
CA C:ASP87 4.2 17.2 1.0
C C:ILE84 4.2 21.2 1.0
CG2 C:ILE81 4.3 15.5 1.0
N C:ASP87 4.4 17.5 1.0
O C:LYS85 4.4 19.9 1.0
C C:ASP87 4.5 16.6 1.0
C C:LYS85 4.6 20.8 1.0
CA C:GLN82 4.6 18.7 1.0
O C:HOH327 4.6 16.6 1.0
N C:GLN82 4.7 17.3 1.0
CA C:ILE81 4.7 15.5 1.0
O C:GLN82 4.7 19.4 1.0
CD1 C:ILE84 4.7 20.3 1.0
CB C:VAL88 4.8 16.2 1.0
C C:GLN82 4.8 19.6 1.0
N C:PRO86 4.8 19.1 1.0
CA C:PRO86 4.9 18.9 1.0
N C:ILE84 4.9 20.7 1.0
CA C:ILE84 4.9 20.7 1.0

Magnesium binding site 4 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 4 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg202

b:28.2
occ:1.00
 O E:HOH369 2.5 33.4 1.0
O E:PRO86 2.6 22.8 1.0
O E:HOH363 2.7 19.4 1.0
O E:ILE81 2.7 20.3 1.0
O E:ILE84 3.3 22.4 1.0
C E:PRO86 3.7 22.5 1.0
C E:ILE81 3.8 20.1 1.0
O E:HOH353 4.0 38.4 1.0
CG1 E:ILE84 4.0 21.9 1.0
N E:VAL88 4.1 19.0 1.0
CG2 E:VAL88 4.1 18.8 1.0
CA E:ASP87 4.2 20.4 1.0
C E:ILE84 4.3 22.9 1.0
CG2 E:ILE81 4.3 18.7 1.0
N E:ASP87 4.3 21.4 1.0
O E:LYS85 4.4 23.6 1.0
C E:ASP87 4.5 20.0 1.0
O E:HOH326 4.6 19.4 1.0
C E:LYS85 4.6 23.4 1.0
CA E:GLN82 4.6 21.6 1.0
N E:GLN82 4.7 20.6 1.0
CA E:ILE81 4.7 19.3 1.0
O E:GLN82 4.7 22.9 1.0
CB E:VAL88 4.8 18.7 1.0
CD1 E:ILE84 4.8 22.0 1.0
N E:PRO86 4.8 23.0 1.0
C E:GLN82 4.8 21.9 1.0
CA E:PRO86 4.9 23.0 1.0
N E:ILE84 4.9 21.5 1.0
CA E:ILE84 5.0 21.9 1.0

Magnesium binding site 5 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 5 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg202

b:30.6
occ:1.00
 O F:HOH396 2.6 37.6 1.0
O F:PRO86 2.7 20.3 1.0
O F:ILE81 2.7 17.4 1.0
O F:HOH380 2.7 19.0 1.0
O F:ILE84 3.2 19.8 1.0
C F:PRO86 3.8 20.1 1.0
C F:ILE81 3.8 16.9 1.0
O F:HOH361 3.9 34.9 1.0
CG1 F:ILE84 4.0 18.4 1.0
C F:ILE84 4.2 19.9 1.0
CG2 F:VAL88 4.2 18.1 1.0
N F:VAL88 4.2 18.1 1.0
CA F:ASP87 4.2 19.6 1.0
CG2 F:ILE81 4.4 16.0 1.0
O F:LYS85 4.4 21.6 1.0
N F:ASP87 4.4 19.8 1.0
C F:ASP87 4.5 18.9 1.0
C F:LYS85 4.6 21.4 1.0
CA F:GLN82 4.6 18.2 1.0
O F:HOH338 4.6 19.5 1.0
N F:GLN82 4.6 17.3 1.0
O F:GLN82 4.7 19.0 1.0
CA F:ILE81 4.7 16.1 1.0
C F:GLN82 4.7 18.6 1.0
CD1 F:ILE84 4.8 18.4 1.0
N F:PRO86 4.8 20.3 1.0
CB F:VAL88 4.9 18.1 1.0
N F:ILE84 4.9 18.4 1.0
CA F:ILE84 4.9 19.1 1.0
CA F:PRO86 4.9 20.2 1.0

Magnesium binding site 6 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 6 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg202

b:25.8
occ:1.00
 O G:HOH368 2.4 37.5 1.0
O G:ILE81 2.6 14.0 1.0
O G:HOH392 2.7 14.3 1.0
O G:PRO86 2.7 16.6 1.0
O G:ILE84 3.2 16.7 1.0
O G:HOH353 3.5 41.2 1.0
C G:ILE81 3.7 14.0 1.0
C G:PRO86 3.9 17.2 1.0
CG1 G:ILE84 3.9 16.1 1.0
O G:HOH342 4.1 28.8 1.0
C G:ILE84 4.2 17.4 1.0
CG2 G:VAL88 4.2 14.2 1.0
N G:VAL88 4.3 14.8 1.0
CG2 G:ILE81 4.3 13.4 1.0
CA G:ASP87 4.3 16.4 1.0
O G:LYS85 4.5 18.2 1.0
CA G:GLN82 4.5 15.5 1.0
N G:ASP87 4.5 16.7 1.0
N G:GLN82 4.5 14.9 1.0
O G:HOH345 4.6 12.5 1.0
O G:GLN82 4.6 14.9 1.0
C G:ASP87 4.6 15.7 1.0
CA G:ILE81 4.6 13.3 1.0
C G:LYS85 4.6 18.4 1.0
C G:GLN82 4.6 15.8 1.0
CD1 G:ILE84 4.8 16.1 1.0
N G:ILE84 4.8 16.7 1.0
CA G:ILE84 4.8 16.9 1.0
CB G:VAL88 4.8 14.2 1.0
N G:PRO86 4.9 17.7 1.0
NE2 G:GLN82 4.9 17.1 1.0
CA G:PRO86 5.0 17.3 1.0

Magnesium binding site 7 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 7 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg202

b:21.6
occ:1.00
 O H:ILE81 2.6 11.6 1.0
O H:HOH384 2.6 33.2 1.0
O H:PRO86 2.7 13.9 1.0
O H:HOH383 2.8 11.5 1.0
O H:ILE84 3.3 14.2 1.0
O H:HOH385 3.5 40.0 1.0
C H:ILE81 3.7 11.8 1.0
C H:PRO86 3.8 14.1 1.0
CG1 H:ILE84 3.9 13.9 1.0
CG2 H:VAL88 4.1 13.3 1.0
O H:HOH377 4.1 27.2 1.0
N H:VAL88 4.2 13.6 1.0
C H:ILE84 4.2 14.9 1.0
CG2 H:ILE81 4.2 11.4 1.0
CA H:ASP87 4.3 14.1 1.0
N H:ASP87 4.4 13.9 1.0
O H:LYS85 4.5 14.8 1.0
C H:ASP87 4.5 13.9 1.0
CA H:GLN82 4.5 13.2 1.0
N H:GLN82 4.6 12.5 1.0
O H:HOH344 4.6 11.6 1.0
CA H:ILE81 4.6 11.3 1.0
C H:LYS85 4.6 15.1 1.0
O H:GLN82 4.7 13.9 1.0
C H:GLN82 4.7 13.6 1.0
CD1 H:ILE84 4.7 14.0 1.0
CB H:VAL88 4.8 13.4 1.0
N H:PRO86 4.9 14.6 1.0
N H:ILE84 4.9 14.3 1.0
CA H:ILE84 4.9 14.3 1.0
CA H:PRO86 4.9 14.1 1.0

Magnesium binding site 8 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 8 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg202

b:19.8
occ:1.00
 O I:HOH388 2.5 36.8 1.0
O I:PRO86 2.6 12.6 1.0
O I:ILE81 2.7 12.6 1.0
O I:HOH398 2.7 11.7 1.0
O I:ILE84 3.2 13.5 1.0
O I:HOH351 3.5 35.3 1.0
C I:PRO86 3.7 13.0 1.0
C I:ILE81 3.8 12.8 1.0
O I:HOH353 3.9 22.2 1.0
CG1 I:ILE84 3.9 13.0 1.0
CG2 I:VAL88 4.1 11.5 1.0
C I:ILE84 4.2 14.1 1.0
N I:VAL88 4.2 11.5 1.0
CA I:ASP87 4.2 12.6 1.0
CG2 I:ILE81 4.3 11.9 1.0
N I:ASP87 4.4 12.6 1.0
O I:LYS85 4.4 14.7 1.0
C I:ASP87 4.5 11.9 1.0
C I:LYS85 4.5 14.4 1.0
CA I:GLN82 4.6 13.8 1.0
O I:HOH335 4.6 9.5 1.0
N I:GLN82 4.6 13.3 1.0
CA I:ILE81 4.7 12.0 1.0
O I:GLN82 4.7 13.8 1.0
CD1 I:ILE84 4.7 12.9 1.0
N I:PRO86 4.7 13.4 1.0
C I:GLN82 4.8 14.0 1.0
CB I:VAL88 4.8 11.3 1.0
CA I:PRO86 4.8 13.3 1.0
N I:ILE84 4.9 13.6 1.0
CA I:ILE84 4.9 13.6 1.0
NE2 I:GLN82 4.9 15.0 1.0

Magnesium binding site 9 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 9 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg202

b:25.4
occ:1.00
 O J:PRO86 2.6 17.3 1.0
O J:HOH398 2.6 36.2 1.0
O J:ILE81 2.6 16.9 1.0
O J:HOH364 2.7 14.6 1.0
O J:ILE84 3.3 18.5 1.0
O J:HOH354 3.4 45.7 1.0
C J:PRO86 3.7 17.4 1.0
C J:ILE81 3.8 16.5 1.0
CG1 J:ILE84 3.9 18.4 1.0
O J:HOH330 4.0 28.1 1.0
CG2 J:VAL88 4.1 15.2 1.0
N J:VAL88 4.1 15.3 1.0
C J:ILE84 4.2 19.2 1.0
CA J:ASP87 4.2 16.4 1.0
CG2 J:ILE81 4.3 15.5 1.0
N J:ASP87 4.4 16.8 1.0
O J:LYS85 4.4 19.3 1.0
C J:ASP87 4.5 15.8 1.0
O J:HOH367 4.5 14.9 1.0
C J:LYS85 4.6 19.3 1.0
CA J:GLN82 4.6 18.4 1.0
N J:GLN82 4.6 17.4 1.0
CA J:ILE81 4.7 15.8 1.0
CD1 J:ILE84 4.7 18.3 1.0
O J:GLN82 4.7 18.7 1.0
CB J:VAL88 4.8 15.2 1.0
C J:GLN82 4.8 18.7 1.0
N J:PRO86 4.8 18.2 1.0
CA J:PRO86 4.9 17.9 1.0
N J:ILE84 4.9 19.3 1.0
CA J:ILE84 4.9 19.1 1.0

Magnesium binding site 10 out of 13 in 7wid

Go back to Magnesium Binding Sites List in 7wid
Magnesium binding site 10 out of 13 in the Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Staphylococcus Aureus Clpp in Complex with ZG180 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg202

b:30.4
occ:1.00
 O K:ILE81 2.6 21.2 1.0
O K:HOH348 2.6 43.5 1.0
O K:HOH380 2.7 21.0 1.0
O K:PRO86 2.8 20.9 1.0
O K:HOH337 3.1 51.9 1.0
O K:ILE84 3.2 21.3 1.0
C K:ILE81 3.7 20.8 1.0
C K:PRO86 3.9 20.7 1.0
CG1 K:ILE84 4.0 20.8 1.0
O K:HOH326 4.1 33.9 1.0
C K:ILE84 4.2 21.1 1.0
CG2 K:VAL88 4.2 19.2 1.0
N K:VAL88 4.2 19.5 1.0
CG2 K:ILE81 4.3 19.7 1.0
CA K:ASP87 4.3 20.5 1.0
O K:LYS85 4.5 21.3 1.0
CA K:GLN82 4.5 22.4 1.0
N K:ASP87 4.5 20.3 1.0
N K:GLN82 4.5 21.8 1.0
O K:GLN82 4.6 23.6 1.0
C K:ASP87 4.6 20.0 1.0
O K:HOH312 4.6 21.7 1.0
C K:LYS85 4.6 20.9 1.0
CA K:ILE81 4.7 20.1 1.0
C K:GLN82 4.7 22.9 1.0
CD1 K:ILE84 4.8 20.6 1.0
N K:ILE84 4.8 22.0 1.0
CB K:VAL88 4.9 19.5 1.0
N K:PRO86 4.9 20.9 1.0
CA K:ILE84 4.9 21.3 1.0
OE1 K:GLN82 5.0 24.4 1.0
CA K:PRO86 5.0 20.9 1.0

Reference:

B.Wei, T.Zhang, P.Wang, Y.Pan, J.Li, W.Chen, M.Zhang, Q.Ji, W.Wu, L.Lan, J.Gan, C.G.Yang. Anti-Infective Therapy Using Species-Specific Activators of Staphylococcus Aureus Clpp. Nat Commun V. 13 6909 2022.
ISSN: ESSN 2041-1723
PubMed: 36376309
DOI: 10.1038/S41467-022-34753-0
Page generated: Thu Oct 3 11:17:28 2024

Last articles

Ir in 8K0Y
I in 9KU6
I in 9AXJ
Hg in 9D67
Hg in 9D66
Hg in 9D69
Hg in 9D6A
Fe in 9J2F
Fe in 9JDC
Fe in 9JDB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy