Atomistry » Magnesium » PDB 7w7u-7wkm » 7wiw
Atomistry »
  Magnesium »
    PDB 7w7u-7wkm »
      7wiw »

Magnesium in PDB 7wiw: Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation (pdb code 7wiw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation, PDB code: 7wiw:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 7wiw

Go back to Magnesium Binding Sites List in 7wiw
Magnesium binding site 1 out of 3 in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:45.6
occ:1.00
OE1 B:GLN414 1.9 44.6 1.0
OG B:SER373 2.1 40.8 1.0
O2B B:ATP601 2.1 45.7 1.0
O2G B:ATP601 2.3 45.7 1.0
CD B:GLN414 2.8 44.6 1.0
CB B:SER373 3.2 40.8 1.0
NE2 B:GLN414 3.2 44.6 1.0
PB B:ATP601 3.5 45.7 1.0
PG B:ATP601 3.5 45.7 1.0
O3B B:ATP601 3.8 45.7 1.0
O1G B:ATP601 3.9 45.7 1.0
CG B:GLN414 4.1 44.6 1.0
CB B:GLN414 4.4 44.6 1.0
CA B:SER373 4.4 40.8 1.0
O1A B:ATP601 4.4 45.7 1.0
N B:SER373 4.4 40.8 1.0
O1B B:ATP601 4.5 45.7 1.0
OD1 B:ASP494 4.5 46.3 1.0
O3A B:ATP601 4.5 45.7 1.0
OD2 B:ASP494 4.6 46.3 1.0
NE2 B:GLN495 4.7 48.2 1.0
O3G B:ATP601 4.8 45.7 1.0
CG B:ASP494 4.9 46.3 1.0
N A:GLY748 5.0 44.9 1.0

Magnesium binding site 2 out of 3 in 7wiw

Go back to Magnesium Binding Sites List in 7wiw
Magnesium binding site 2 out of 3 in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:44.0
occ:1.00
OE1 A:GLN691 1.9 45.0 1.0
OG A:SER650 2.0 41.5 1.0
O2G A:ATP901 2.2 44.7 1.0
O2B A:ATP901 2.4 44.7 1.0
CD A:GLN691 3.0 45.0 1.0
PG A:ATP901 3.1 44.7 1.0
O3B A:ATP901 3.3 44.7 1.0
CB A:SER650 3.3 41.5 1.0
O1G A:ATP901 3.4 44.7 1.0
PB A:ATP901 3.4 44.7 1.0
NE2 A:GLN691 3.5 45.0 1.0
N A:SER650 4.2 41.5 1.0
OD2 A:ASP770 4.2 46.0 1.0
O3A A:ATP901 4.2 44.7 1.0
CG A:GLN691 4.3 45.0 1.0
CA A:SER650 4.3 41.5 1.0
O1A A:ATP901 4.4 44.7 1.0
O3G A:ATP901 4.5 44.7 1.0
CB A:GLN691 4.5 45.0 1.0
N B:GLY472 4.6 43.4 1.0
O1B A:ATP901 4.6 44.7 1.0
OD1 A:ASP770 4.8 46.0 1.0
PA A:ATP901 4.9 44.7 1.0
NE2 A:GLN771 5.0 48.4 1.0
CG A:ASP770 5.0 46.0 1.0

Magnesium binding site 3 out of 3 in 7wiw

Go back to Magnesium Binding Sites List in 7wiw
Magnesium binding site 3 out of 3 in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:42.5
occ:1.00
NE2 A:HIS402 2.4 48.7 1.0
NE2 A:HIS356 2.4 47.0 1.0
NE2 A:HIS407 2.4 49.1 1.0
CE1 A:HIS407 3.0 49.1 1.0
CD2 A:HIS402 3.1 48.7 1.0
CE1 A:HIS356 3.3 47.0 1.0
CD2 A:HIS356 3.4 47.0 1.0
CE1 A:HIS402 3.5 48.7 1.0
CD2 A:HIS407 3.7 49.1 1.0
ND1 A:HIS407 4.2 49.1 1.0
CG A:HIS402 4.4 48.7 1.0
ND1 A:HIS356 4.5 47.0 1.0
ND1 A:HIS402 4.5 48.7 1.0
CG A:HIS356 4.5 47.0 1.0
CG A:HIS407 4.6 49.1 1.0
OG1 A:THR406 4.7 48.4 1.0

Reference:

B.Zhang, S.Sun, H.Yang, Z.Rao. Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation To Be Published.
Page generated: Thu Oct 3 11:17:43 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy