Magnesium in PDB 7wiw: Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation

The binding sites of Magnesium atom in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation (pdb code 7wiw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation, PDB code: 7wiw:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:45.6 occ:1.00 OE1 B:GLN414 1.9 44.6 1.0 OG B:SER373 2.1 40.8 1.0 O2B B:ATP601 2.1 45.7 1.0 O2G B:ATP601 2.3 45.7 1.0 CD B:GLN414 2.8 44.6 1.0 CB B:SER373 3.2 40.8 1.0 NE2 B:GLN414 3.2 44.6 1.0 PB B:ATP601 3.5 45.7 1.0 PG B:ATP601 3.5 45.7 1.0 O3B B:ATP601 3.8 45.7 1.0 O1G B:ATP601 3.9 45.7 1.0 CG B:GLN414 4.1 44.6 1.0 CB B:GLN414 4.4 44.6 1.0 CA B:SER373 4.4 40.8 1.0 O1A B:ATP601 4.4 45.7 1.0 N B:SER373 4.4 40.8 1.0 O1B B:ATP601 4.5 45.7 1.0 OD1 B:ASP494 4.5 46.3 1.0 O3A B:ATP601 4.5 45.7 1.0 OD2 B:ASP494 4.6 46.3 1.0 NE2 B:GLN495 4.7 48.2 1.0 O3G B:ATP601 4.8 45.7 1.0 CG B:ASP494 4.9 46.3 1.0 N A:GLY748 5.0 44.9 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:44.0 occ:1.00 OE1 A:GLN691 1.9 45.0 1.0 OG A:SER650 2.0 41.5 1.0 O2G A:ATP901 2.2 44.7 1.0 O2B A:ATP901 2.4 44.7 1.0 CD A:GLN691 3.0 45.0 1.0 PG A:ATP901 3.1 44.7 1.0 O3B A:ATP901 3.3 44.7 1.0 CB A:SER650 3.3 41.5 1.0 O1G A:ATP901 3.4 44.7 1.0 PB A:ATP901 3.4 44.7 1.0 NE2 A:GLN691 3.5 45.0 1.0 N A:SER650 4.2 41.5 1.0 OD2 A:ASP770 4.2 46.0 1.0 O3A A:ATP901 4.2 44.7 1.0 CG A:GLN691 4.3 45.0 1.0 CA A:SER650 4.3 41.5 1.0 O1A A:ATP901 4.4 44.7 1.0 O3G A:ATP901 4.5 44.7 1.0 CB A:GLN691 4.5 45.0 1.0 N B:GLY472 4.6 43.4 1.0 O1B A:ATP901 4.6 44.7 1.0 OD1 A:ASP770 4.8 46.0 1.0 PA A:ATP901 4.9 44.7 1.0 NE2 A:GLN771 5.0 48.4 1.0 CG A:ASP770 5.0 46.0 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg903 b:42.5 occ:1.00 NE2 A:HIS402 2.4 48.7 1.0 NE2 A:HIS356 2.4 47.0 1.0 NE2 A:HIS407 2.4 49.1 1.0 CE1 A:HIS407 3.0 49.1 1.0 CD2 A:HIS402 3.1 48.7 1.0 CE1 A:HIS356 3.3 47.0 1.0 CD2 A:HIS356 3.4 47.0 1.0 CE1 A:HIS402 3.5 48.7 1.0 CD2 A:HIS407 3.7 49.1 1.0 ND1 A:HIS407 4.2 49.1 1.0 CG A:HIS402 4.4 48.7 1.0 ND1 A:HIS356 4.5 47.0 1.0 ND1 A:HIS402 4.5 48.7 1.0 CG A:HIS356 4.5 47.0 1.0 CG A:HIS407 4.6 49.1 1.0 OG1 A:THR406 4.7 48.4 1.0

B.Zhang, S.Sun, H.Yang, Z.Rao. Cryo-Em Structure of Mycobacterium Tuberculosis Irtab Complexed with Atp in An Occluded Conformation To Be Published.