Magnesium in PDB 7wjh: Crystal Structure of Bcl-Xl Bound to the BH3 Domain of Human PXT1

The structure of Crystal Structure of Bcl-Xl Bound to the BH3 Domain of Human PXT1, PDB code: 7wjh was solved by D.Lim, B.Ku, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.61 / 1.70
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	56.658, 60.675, 97.763, 90, 90, 90
R / Rfree (%)	17.2 / 20.7

The binding sites of Magnesium atom in the Crystal Structure of Bcl-Xl Bound to the BH3 Domain of Human PXT1 (pdb code 7wjh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Bcl-Xl Bound to the BH3 Domain of Human PXT1, PDB code: 7wjh:

Magnesium binding site 1 out of 1 in the Crystal Structure of Bcl-Xl Bound to the BH3 Domain of Human PXT1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bcl-Xl Bound to the BH3 Domain of Human PXT1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:26.7 occ:1.00 OD1 B:ASP94 1.7 34.9 1.0 CG B:ASP94 2.7 34.8 1.0 O B:HOH318 3.0 20.9 1.0 OH A:TYR195 3.0 19.7 1.0 N B:ARG96 3.4 25.0 1.0 OD2 B:ASP94 3.5 26.1 1.0 CB B:ARG96 3.6 20.7 1.0 CE1 A:TYR195 3.7 18.5 1.0 CB A:TRP137 3.7 15.4 1.0 CB B:ASP94 3.8 20.6 1.0 N B:MET97 3.8 18.9 1.0 CZ A:TYR195 3.8 20.0 1.0 CG B:ARG96 3.9 20.1 1.0 CD1 A:TRP137 3.9 16.8 1.0 CA B:ASP94 3.9 22.6 1.0 N B:HIS95 3.9 27.5 1.0 CA B:ARG96 3.9 19.9 1.0 C B:ASP94 4.1 23.8 1.0 N A:TRP137 4.2 16.1 1.0 CG A:TRP137 4.2 16.1 1.0 C B:ARG96 4.2 20.1 1.0 CD1 A:LEU194 4.3 22.1 1.0 C B:HIS95 4.4 24.7 1.0 CA A:TRP137 4.5 14.9 1.0 N A:GLY138 4.5 13.9 1.0 CA B:HIS95 4.6 32.3 1.0 CB B:MET97 4.6 26.6 1.0 CD B:ARG96 4.6 18.9 1.0 CA B:MET97 4.7 19.8 1.0 C A:TRP137 4.9 12.2 1.0 O B:ASP94 5.0 24.4 1.0

D.Lim, S.Jin, H.C.Shin, W.Kim, J.S.Choi, D.B.Oh, S.J.Kim, J.Seo, B.Ku. Structural and Biochemical Analyses of Bcl-Xl in Complex with the BH3 Domain of Peroxisomal Testis-Specific 1. Biochem.Biophys.Res.Commun. V. 625 174 2022.
ISSN: ESSN 1090-2104
PubMed: 35964379
DOI: 10.1016/J.BBRC.2022.08.009