Magnesium in PDB 7wyu: Cryo-Em Structure of Na+,K+-Atpase in the E2P State Formed By Atp
Other elements in 7wyu:
The structure of Cryo-Em Structure of Na+,K+-Atpase in the E2P State Formed By Atp also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Na+,K+-Atpase in the E2P State Formed By Atp
(pdb code 7wyu). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the
Cryo-Em Structure of Na+,K+-Atpase in the E2P State Formed By Atp, PDB code: 7wyu:
Jump to Magnesium binding site number:
1;
2;
Magnesium binding site 1 out
of 2 in 7wyu
Go back to
Magnesium Binding Sites List in 7wyu
Magnesium binding site 1 out
of 2 in the Cryo-Em Structure of Na+,K+-Atpase in the E2P State Formed By Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Na+,K+-Atpase in the E2P State Formed By Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1101
b:52.5
occ:1.00
|
OP3
|
A:PHD376
|
1.9
|
47.5
|
1.0
|
O
|
A:HOH2001
|
2.0
|
48.0
|
1.0
|
O
|
A:THR378
|
2.0
|
51.2
|
1.0
|
OD1
|
A:ASP717
|
2.1
|
49.2
|
1.0
|
O
|
A:HOH2002
|
2.1
|
59.0
|
1.0
|
OD2
|
A:PHD376
|
2.2
|
47.5
|
1.0
|
CG
|
A:ASP717
|
3.0
|
49.2
|
1.0
|
CG
|
A:PHD376
|
3.2
|
47.5
|
1.0
|
C
|
A:THR378
|
3.2
|
51.2
|
1.0
|
P
|
A:PHD376
|
3.2
|
47.5
|
1.0
|
OD2
|
A:ASP717
|
3.3
|
49.2
|
1.0
|
OD1
|
A:PHD376
|
3.5
|
47.5
|
1.0
|
OD2
|
A:ASP721
|
3.9
|
51.6
|
1.0
|
N
|
A:GLY718
|
4.0
|
51.4
|
1.0
|
OP1
|
A:PHD376
|
4.0
|
47.5
|
1.0
|
CB
|
A:THR378
|
4.0
|
51.2
|
1.0
|
CA
|
A:THR378
|
4.1
|
51.2
|
1.0
|
N
|
A:GLY379
|
4.2
|
47.5
|
1.0
|
OP2
|
A:PHD376
|
4.3
|
47.5
|
1.0
|
CA
|
A:GLY379
|
4.3
|
47.5
|
1.0
|
CG2
|
A:THR378
|
4.4
|
51.2
|
1.0
|
N
|
A:THR378
|
4.4
|
51.2
|
1.0
|
CB
|
A:ASP717
|
4.4
|
49.2
|
1.0
|
OD1
|
A:ASN720
|
4.4
|
54.6
|
1.0
|
CB
|
A:PHD376
|
4.5
|
47.5
|
1.0
|
N
|
A:ASP717
|
4.5
|
49.2
|
1.0
|
CA
|
A:GLY718
|
4.6
|
51.4
|
1.0
|
OG1
|
A:THR380
|
4.6
|
46.7
|
1.0
|
ND2
|
A:ASN720
|
4.7
|
54.6
|
1.0
|
C
|
A:ASP717
|
4.8
|
49.2
|
1.0
|
CA
|
A:ASP717
|
4.8
|
49.2
|
1.0
|
O
|
A:SER216
|
4.8
|
79.1
|
1.0
|
N
|
A:THR380
|
4.9
|
46.7
|
1.0
|
C
|
A:GLY379
|
4.9
|
47.5
|
1.0
|
CG
|
A:ASP721
|
4.9
|
51.6
|
1.0
|
|
Magnesium binding site 2 out
of 2 in 7wyu
Go back to
Magnesium Binding Sites List in 7wyu
Magnesium binding site 2 out
of 2 in the Cryo-Em Structure of Na+,K+-Atpase in the E2P State Formed By Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Na+,K+-Atpase in the E2P State Formed By Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1101
b:53.3
occ:1.00
|
OP3
|
C:PHD376
|
1.9
|
47.2
|
1.0
|
O
|
C:HOH2001
|
1.9
|
48.5
|
1.0
|
O
|
C:THR378
|
2.0
|
51.4
|
1.0
|
OD1
|
C:ASP717
|
2.1
|
49.8
|
1.0
|
O
|
C:HOH2002
|
2.1
|
60.0
|
1.0
|
OD2
|
C:PHD376
|
2.2
|
47.2
|
1.0
|
CG
|
C:ASP717
|
3.0
|
49.8
|
1.0
|
CG
|
C:PHD376
|
3.2
|
47.2
|
1.0
|
C
|
C:THR378
|
3.2
|
51.4
|
1.0
|
P
|
C:PHD376
|
3.2
|
47.2
|
1.0
|
OD2
|
C:ASP717
|
3.3
|
49.8
|
1.0
|
OD1
|
C:PHD376
|
3.5
|
47.2
|
1.0
|
OD2
|
C:ASP721
|
3.9
|
50.8
|
1.0
|
N
|
C:GLY718
|
4.0
|
50.9
|
1.0
|
OP1
|
C:PHD376
|
4.0
|
47.2
|
1.0
|
CB
|
C:THR378
|
4.0
|
51.4
|
1.0
|
CA
|
C:THR378
|
4.1
|
51.4
|
1.0
|
N
|
C:GLY379
|
4.2
|
47.7
|
1.0
|
OP2
|
C:PHD376
|
4.3
|
47.2
|
1.0
|
CA
|
C:GLY379
|
4.3
|
47.7
|
1.0
|
CG2
|
C:THR378
|
4.4
|
51.4
|
1.0
|
N
|
C:THR378
|
4.4
|
51.4
|
1.0
|
CB
|
C:ASP717
|
4.4
|
49.8
|
1.0
|
OD1
|
C:ASN720
|
4.4
|
53.9
|
1.0
|
CB
|
C:PHD376
|
4.5
|
47.2
|
1.0
|
N
|
C:ASP717
|
4.6
|
49.8
|
1.0
|
CA
|
C:GLY718
|
4.6
|
50.9
|
1.0
|
OG1
|
C:THR380
|
4.6
|
46.8
|
1.0
|
ND2
|
C:ASN720
|
4.7
|
53.9
|
1.0
|
C
|
C:ASP717
|
4.8
|
49.8
|
1.0
|
CA
|
C:ASP717
|
4.8
|
49.8
|
1.0
|
O
|
C:SER216
|
4.8
|
80.0
|
1.0
|
N
|
C:THR380
|
4.9
|
46.8
|
1.0
|
C
|
C:GLY379
|
4.9
|
47.7
|
1.0
|
CG
|
C:ASP721
|
4.9
|
50.8
|
1.0
|
|
Reference:
R.Kanai,
F.Cornelius,
B.Vilsen,
C.Toyoshima.
Cryoelectron Microscopy of Na + ,K + -Atpase in the Two E2P States with and Without Cardiotonic Steroids. Proc.Natl.Acad.Sci.Usa V. 119 26119 2022.
ISSN: ESSN 1091-6490
PubMed: 35380894
DOI: 10.1073/PNAS.2123226119
Page generated: Fri Apr 7 01:54:23 2023
|