Magnesium in PDB 7x0v: Cryo-Em Structure of Human Tric-Adp-Alfx
Other elements in 7x0v:
The structure of Cryo-Em Structure of Human Tric-Adp-Alfx also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Human Tric-Adp-Alfx
(pdb code 7x0v). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the
Cryo-Em Structure of Human Tric-Adp-Alfx, PDB code: 7x0v:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 1 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg602
b:4.6
occ:1.00
|
CG
|
K:ASP90
|
1.2
|
39.0
|
1.0
|
|
OD1
|
K:ASP90
|
1.2
|
39.0
|
1.0
|
|
OD2
|
K:ASP90
|
1.3
|
39.0
|
1.0
|
|
O3A
|
K:ADP601
|
2.0
|
5.0
|
1.0
|
|
O2A
|
K:ADP601
|
2.1
|
5.0
|
1.0
|
|
F1
|
K:AF3603
|
2.1
|
6.1
|
1.0
|
|
PA
|
K:ADP601
|
2.5
|
5.0
|
1.0
|
|
CB
|
K:ASP90
|
2.7
|
39.0
|
1.0
|
|
PB
|
K:ADP601
|
3.2
|
5.0
|
1.0
|
|
O2B
|
K:ADP601
|
3.2
|
5.0
|
1.0
|
|
O1A
|
K:ADP601
|
3.6
|
5.0
|
1.0
|
|
CA
|
K:ASP90
|
3.6
|
39.0
|
1.0
|
|
AL
|
K:AF3603
|
3.7
|
6.1
|
1.0
|
|
O5'
|
K:ADP601
|
3.7
|
5.0
|
1.0
|
|
O3B
|
K:ADP601
|
3.8
|
5.0
|
1.0
|
|
N
|
K:GLY91
|
3.8
|
38.1
|
1.0
|
|
OD2
|
K:ASP393
|
3.9
|
41.1
|
1.0
|
|
NZ
|
K:LYS159
|
4.0
|
38.1
|
1.0
|
|
OD1
|
K:ASP393
|
4.2
|
41.1
|
1.0
|
|
C
|
K:ASP90
|
4.2
|
39.0
|
1.0
|
|
OG1
|
K:THR158
|
4.2
|
39.5
|
1.0
|
|
O1B
|
K:ADP601
|
4.4
|
5.0
|
1.0
|
|
CG
|
K:ASP393
|
4.4
|
41.1
|
1.0
|
|
F3
|
K:AF3603
|
4.7
|
6.1
|
1.0
|
|
C5'
|
K:ADP601
|
4.7
|
5.0
|
1.0
|
|
N
|
K:ASP90
|
4.8
|
39.0
|
1.0
|
|
F2
|
K:AF3603
|
4.9
|
6.1
|
1.0
|
|
CA
|
K:GLY91
|
4.9
|
38.1
|
1.0
|
|
Magnesium binding site 2 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 2 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg602
b:9.8
occ:1.00
|
O2A
|
J:ADP601
|
2.0
|
6.9
|
1.0
|
|
OG
|
J:SER170
|
2.5
|
41.2
|
1.0
|
|
OD1
|
J:ASP99
|
3.2
|
39.5
|
1.0
|
|
O2B
|
J:ADP601
|
3.5
|
6.9
|
1.0
|
|
CB
|
J:SER170
|
3.5
|
41.2
|
1.0
|
|
NZ
|
J:LYS171
|
3.5
|
41.9
|
1.0
|
|
PA
|
J:ADP601
|
3.5
|
6.9
|
1.0
|
|
F1
|
J:AF3603
|
3.5
|
6.8
|
1.0
|
|
CE
|
J:LYS171
|
3.7
|
41.9
|
1.0
|
|
OD2
|
J:ASP99
|
3.7
|
39.5
|
1.0
|
|
CG
|
J:ASP99
|
3.8
|
39.5
|
1.0
|
|
F2
|
J:AF3603
|
3.9
|
6.8
|
1.0
|
|
O
|
J:SER167
|
4.1
|
42.5
|
1.0
|
|
AL
|
J:AF3603
|
4.1
|
6.8
|
1.0
|
|
CA
|
J:SER167
|
4.2
|
42.5
|
1.0
|
|
O3A
|
J:ADP601
|
4.3
|
6.9
|
1.0
|
|
O5'
|
J:ADP601
|
4.3
|
6.9
|
1.0
|
|
CD
|
J:LYS171
|
4.4
|
41.9
|
1.0
|
|
C5'
|
J:ADP601
|
4.4
|
6.9
|
1.0
|
|
O1A
|
J:ADP601
|
4.4
|
6.9
|
1.0
|
|
O
|
J:THR166
|
4.5
|
41.8
|
1.0
|
|
C
|
J:SER167
|
4.6
|
42.5
|
1.0
|
|
PB
|
J:ADP601
|
4.6
|
6.9
|
1.0
|
|
CB
|
J:SER167
|
4.8
|
42.5
|
1.0
|
|
CA
|
J:SER170
|
4.8
|
41.2
|
1.0
|
|
OG
|
J:SER167
|
5.0
|
42.5
|
1.0
|
|
Magnesium binding site 3 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 3 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg602
b:9.8
occ:1.00
|
O2A
|
H:ADP601
|
2.0
|
6.9
|
1.0
|
|
O
|
H:ALA162
|
3.4
|
38.5
|
1.0
|
|
O2B
|
H:ADP601
|
3.5
|
6.9
|
1.0
|
|
F1
|
H:AF3603
|
3.5
|
6.8
|
1.0
|
|
PA
|
H:ADP601
|
3.5
|
6.9
|
1.0
|
|
CB
|
H:ASP92
|
3.9
|
40.4
|
1.0
|
|
F2
|
H:AF3603
|
3.9
|
6.8
|
1.0
|
|
CA
|
H:ALA162
|
4.0
|
38.5
|
1.0
|
|
CE
|
H:LYS166
|
4.1
|
40.4
|
1.0
|
|
C
|
H:ALA162
|
4.1
|
38.5
|
1.0
|
|
AL
|
H:AF3603
|
4.1
|
6.8
|
1.0
|
|
O
|
H:SER164
|
4.1
|
41.0
|
1.0
|
|
OG
|
H:SER165
|
4.1
|
40.7
|
1.0
|
|
O
|
H:THR161
|
4.1
|
39.7
|
1.0
|
|
O3A
|
H:ADP601
|
4.3
|
6.9
|
1.0
|
|
O5'
|
H:ADP601
|
4.3
|
6.9
|
1.0
|
|
C5'
|
H:ADP601
|
4.4
|
6.9
|
1.0
|
|
O1A
|
H:ADP601
|
4.4
|
6.9
|
1.0
|
|
O
|
H:ASP92
|
4.4
|
40.4
|
1.0
|
|
NZ
|
H:LYS166
|
4.5
|
40.4
|
1.0
|
|
PB
|
H:ADP601
|
4.6
|
6.9
|
1.0
|
|
CA
|
H:ASP92
|
4.7
|
40.4
|
1.0
|
|
CB
|
H:ALA162
|
4.7
|
38.5
|
1.0
|
|
C
|
H:ASP92
|
4.8
|
40.4
|
1.0
|
|
N
|
H:ALA162
|
5.0
|
38.5
|
1.0
|
|
C
|
H:THR161
|
5.0
|
39.7
|
1.0
|
|
Magnesium binding site 4 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 4 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg602
b:9.8
occ:1.00
|
O2A
|
G:ADP601
|
2.0
|
6.9
|
1.0
|
|
O
|
G:SER159
|
3.0
|
32.9
|
1.0
|
|
OD1
|
G:ASP93
|
3.0
|
38.7
|
1.0
|
|
CE
|
G:LYS163
|
3.2
|
35.6
|
1.0
|
|
O2B
|
G:ADP601
|
3.5
|
6.9
|
1.0
|
|
CB
|
G:ASP93
|
3.5
|
38.7
|
1.0
|
|
F1
|
G:AF3603
|
3.5
|
6.8
|
1.0
|
|
PA
|
G:ADP601
|
3.5
|
6.9
|
1.0
|
|
NZ
|
G:LYS163
|
3.6
|
35.6
|
1.0
|
|
CG
|
G:ASP93
|
3.6
|
38.7
|
1.0
|
|
F2
|
G:AF3603
|
3.9
|
6.8
|
1.0
|
|
CB
|
G:THR162
|
4.1
|
37.9
|
1.0
|
|
AL
|
G:AF3603
|
4.1
|
6.8
|
1.0
|
|
C
|
G:SER159
|
4.1
|
32.9
|
1.0
|
|
CD
|
G:LYS163
|
4.2
|
35.6
|
1.0
|
|
CG
|
G:LYS163
|
4.2
|
35.6
|
1.0
|
|
OG1
|
G:THR162
|
4.3
|
37.9
|
1.0
|
|
O3A
|
G:ADP601
|
4.3
|
6.9
|
1.0
|
|
O5'
|
G:ADP601
|
4.3
|
6.9
|
1.0
|
|
CA
|
G:ASP93
|
4.4
|
38.7
|
1.0
|
|
C5'
|
G:ADP601
|
4.4
|
6.9
|
1.0
|
|
O1A
|
G:ADP601
|
4.4
|
6.9
|
1.0
|
|
CA
|
G:SER159
|
4.6
|
32.9
|
1.0
|
|
PB
|
G:ADP601
|
4.6
|
6.9
|
1.0
|
|
CG2
|
G:THR162
|
4.6
|
37.9
|
1.0
|
|
O
|
G:ASP93
|
4.7
|
38.7
|
1.0
|
|
OD2
|
G:ASP93
|
4.8
|
38.7
|
1.0
|
|
CB
|
G:SER159
|
5.0
|
32.9
|
1.0
|
|
C
|
G:ASP93
|
5.0
|
38.7
|
1.0
|
|
Magnesium binding site 5 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 5 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg602
b:9.8
occ:1.00
|
O2A
|
E:ADP601
|
2.0
|
6.9
|
1.0
|
|
OG
|
E:SER173
|
3.0
|
35.9
|
1.0
|
|
O
|
E:THR170
|
3.2
|
36.0
|
1.0
|
|
O2B
|
E:ADP601
|
3.5
|
6.9
|
1.0
|
|
F1
|
E:AF3603
|
3.5
|
6.8
|
1.0
|
|
PA
|
E:ADP601
|
3.5
|
6.9
|
1.0
|
|
CG2
|
E:THR170
|
3.7
|
36.0
|
1.0
|
|
CA
|
E:THR170
|
3.8
|
36.0
|
1.0
|
|
C
|
E:THR170
|
3.9
|
36.0
|
1.0
|
|
F2
|
E:AF3603
|
3.9
|
6.8
|
1.0
|
|
O
|
E:ASP102
|
4.1
|
39.0
|
1.0
|
|
AL
|
E:AF3603
|
4.1
|
6.8
|
1.0
|
|
CB
|
E:SER173
|
4.2
|
35.9
|
1.0
|
|
O3A
|
E:ADP601
|
4.3
|
6.9
|
1.0
|
|
O5'
|
E:ADP601
|
4.3
|
6.9
|
1.0
|
|
C5'
|
E:ADP601
|
4.4
|
6.9
|
1.0
|
|
CB
|
E:THR170
|
4.4
|
36.0
|
1.0
|
|
O1A
|
E:ADP601
|
4.4
|
6.9
|
1.0
|
|
CE
|
E:LYS174
|
4.4
|
35.1
|
1.0
|
|
O
|
E:THR169
|
4.5
|
36.2
|
1.0
|
|
PB
|
E:ADP601
|
4.6
|
6.9
|
1.0
|
|
NZ
|
E:LYS174
|
4.9
|
35.1
|
1.0
|
|
Magnesium binding site 6 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 6 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg602
b:9.8
occ:1.00
|
O2A
|
I:ADP601
|
2.0
|
6.9
|
1.0
|
|
O2B
|
I:ADP601
|
3.5
|
6.9
|
1.0
|
|
F1
|
I:AF3603
|
3.5
|
6.8
|
1.0
|
|
PA
|
I:ADP601
|
3.5
|
6.9
|
1.0
|
|
O
|
I:SER170
|
3.7
|
35.6
|
1.0
|
|
CB
|
I:SER170
|
3.8
|
35.6
|
1.0
|
|
CA
|
I:SER170
|
3.8
|
35.6
|
1.0
|
|
OG
|
I:SER173
|
3.8
|
36.1
|
1.0
|
|
OD1
|
I:ASP104
|
3.9
|
36.4
|
1.0
|
|
F2
|
I:AF3603
|
3.9
|
6.8
|
1.0
|
|
AL
|
I:AF3603
|
4.1
|
6.8
|
1.0
|
|
CE
|
I:LYS174
|
4.2
|
35.8
|
1.0
|
|
C
|
I:SER170
|
4.2
|
35.6
|
1.0
|
|
O3A
|
I:ADP601
|
4.3
|
6.9
|
1.0
|
|
O5'
|
I:ADP601
|
4.3
|
6.9
|
1.0
|
|
C5'
|
I:ADP601
|
4.4
|
6.9
|
1.0
|
|
O1A
|
I:ADP601
|
4.4
|
6.9
|
1.0
|
|
O
|
I:ASP104
|
4.5
|
36.4
|
1.0
|
|
NZ
|
I:LYS174
|
4.5
|
35.8
|
1.0
|
|
PB
|
I:ADP601
|
4.6
|
6.9
|
1.0
|
|
CB
|
I:ASP104
|
4.7
|
36.4
|
1.0
|
|
CG
|
I:ASP104
|
4.7
|
36.4
|
1.0
|
|
OD2
|
I:ASP407
|
4.8
|
36.7
|
1.0
|
|
CB
|
I:ASP407
|
4.9
|
36.7
|
1.0
|
|
CA
|
I:ASP104
|
4.9
|
36.4
|
1.0
|
|
Magnesium binding site 7 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 7 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:7.1
occ:1.00
|
O2A
|
B:ADP601
|
2.0
|
5.0
|
1.0
|
|
OD1
|
B:ASP97
|
2.1
|
38.3
|
1.0
|
|
F1
|
B:AF3603
|
2.3
|
7.0
|
1.0
|
|
OD2
|
B:ASP97
|
2.5
|
38.3
|
1.0
|
|
CG
|
B:ASP97
|
2.7
|
38.3
|
1.0
|
|
O2B
|
B:ADP601
|
3.1
|
5.0
|
1.0
|
|
PA
|
B:ADP601
|
3.4
|
5.0
|
1.0
|
|
CG2
|
B:THR166
|
3.8
|
37.0
|
1.0
|
|
OG
|
B:SER169
|
3.8
|
41.6
|
1.0
|
|
O3A
|
B:ADP601
|
3.9
|
5.0
|
1.0
|
|
AL
|
B:AF3603
|
4.0
|
7.0
|
1.0
|
|
O5'
|
B:ADP601
|
4.1
|
5.0
|
1.0
|
|
CB
|
B:ASP97
|
4.2
|
38.3
|
1.0
|
|
PB
|
B:ADP601
|
4.2
|
5.0
|
1.0
|
|
CA
|
B:THR166
|
4.2
|
37.0
|
1.0
|
|
C5'
|
B:ADP601
|
4.3
|
5.0
|
1.0
|
|
O
|
B:THR166
|
4.3
|
37.0
|
1.0
|
|
CB
|
B:THR166
|
4.4
|
37.0
|
1.0
|
|
N
|
B:GLY98
|
4.4
|
38.0
|
1.0
|
|
O1A
|
B:ADP601
|
4.6
|
5.0
|
1.0
|
|
OG1
|
B:THR166
|
4.7
|
37.0
|
1.0
|
|
C
|
B:THR166
|
4.8
|
37.0
|
1.0
|
|
CA
|
B:ASP97
|
4.8
|
38.3
|
1.0
|
|
F3
|
B:AF3603
|
4.9
|
7.0
|
1.0
|
|
Magnesium binding site 8 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 8 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg602
b:9.8
occ:1.00
|
OD1
|
A:ASP88
|
1.7
|
37.4
|
1.0
|
|
O2A
|
A:ADP601
|
2.0
|
6.9
|
1.0
|
|
CG
|
A:ASP88
|
2.5
|
37.4
|
1.0
|
|
OD2
|
A:ASP88
|
2.5
|
37.4
|
1.0
|
|
O
|
A:SER155
|
3.3
|
37.9
|
1.0
|
|
OG
|
A:SER158
|
3.4
|
39.2
|
1.0
|
|
O2B
|
A:ADP601
|
3.5
|
6.9
|
1.0
|
|
F1
|
A:AF3603
|
3.5
|
6.8
|
1.0
|
|
PA
|
A:ADP601
|
3.5
|
6.9
|
1.0
|
|
NZ
|
A:LYS159
|
3.5
|
38.9
|
1.0
|
|
OG
|
A:SER155
|
3.6
|
37.9
|
1.0
|
|
CA
|
A:SER155
|
3.8
|
37.9
|
1.0
|
|
CE
|
A:LYS159
|
3.9
|
38.9
|
1.0
|
|
F2
|
A:AF3603
|
3.9
|
6.8
|
1.0
|
|
C
|
A:SER155
|
4.0
|
37.9
|
1.0
|
|
AL
|
A:AF3603
|
4.1
|
6.8
|
1.0
|
|
CB
|
A:ASP88
|
4.2
|
37.4
|
1.0
|
|
CB
|
A:SER155
|
4.2
|
37.9
|
1.0
|
|
O3A
|
A:ADP601
|
4.3
|
6.9
|
1.0
|
|
O5'
|
A:ADP601
|
4.3
|
6.9
|
1.0
|
|
C5'
|
A:ADP601
|
4.4
|
6.9
|
1.0
|
|
O1A
|
A:ADP601
|
4.4
|
6.9
|
1.0
|
|
PB
|
A:ADP601
|
4.6
|
6.9
|
1.0
|
|
CB
|
A:SER158
|
4.6
|
39.2
|
1.0
|
|
CD
|
A:LYS159
|
4.7
|
38.9
|
1.0
|
|
O
|
A:THR154
|
4.7
|
36.5
|
1.0
|
|
N
|
A:SER155
|
5.0
|
37.9
|
1.0
|
|
Magnesium binding site 9 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 9 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
z:Mg602
b:4.6
occ:1.00
|
OD1
|
z:ASP90
|
1.0
|
36.4
|
1.0
|
|
CG
|
z:ASP90
|
1.2
|
36.4
|
1.0
|
|
OD2
|
z:ASP90
|
1.4
|
36.4
|
1.0
|
|
O3A
|
z:ADP601
|
2.0
|
5.0
|
1.0
|
|
O1A
|
z:ADP601
|
2.1
|
5.0
|
1.0
|
|
F1
|
z:AF3603
|
2.1
|
6.1
|
1.0
|
|
PA
|
z:ADP601
|
2.5
|
5.0
|
1.0
|
|
CB
|
z:ASP90
|
2.7
|
36.4
|
1.0
|
|
PB
|
z:ADP601
|
3.2
|
5.0
|
1.0
|
|
O2B
|
z:ADP601
|
3.2
|
5.0
|
1.0
|
|
CA
|
z:ASP90
|
3.4
|
36.4
|
1.0
|
|
O2A
|
z:ADP601
|
3.6
|
5.0
|
1.0
|
|
AL
|
z:AF3603
|
3.7
|
6.1
|
1.0
|
|
N
|
z:GLY91
|
3.7
|
36.2
|
1.0
|
|
O5'
|
z:ADP601
|
3.7
|
5.0
|
1.0
|
|
O1B
|
z:ADP601
|
3.8
|
5.0
|
1.0
|
|
NZ
|
z:LYS159
|
3.9
|
35.4
|
1.0
|
|
C
|
z:ASP90
|
4.1
|
36.4
|
1.0
|
|
OD1
|
z:ASP393
|
4.1
|
38.5
|
1.0
|
|
OD2
|
z:ASP393
|
4.1
|
38.5
|
1.0
|
|
OG1
|
z:THR158
|
4.2
|
36.5
|
1.0
|
|
O3B
|
z:ADP601
|
4.4
|
5.0
|
1.0
|
|
CG
|
z:ASP393
|
4.6
|
38.5
|
1.0
|
|
F3
|
z:AF3603
|
4.7
|
6.1
|
1.0
|
|
N
|
z:ASP90
|
4.7
|
36.4
|
1.0
|
|
C5'
|
z:ADP601
|
4.7
|
5.0
|
1.0
|
|
CA
|
z:GLY91
|
4.8
|
36.2
|
1.0
|
|
F2
|
z:AF3603
|
4.9
|
6.1
|
1.0
|
|
Magnesium binding site 10 out
of 16 in 7x0v
Go back to
Magnesium Binding Sites List in 7x0v
Magnesium binding site 10 out
of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg602
b:9.8
occ:1.00
|
O1A
|
P:ADP601
|
2.0
|
6.9
|
1.0
|
|
OG
|
P:SER170
|
2.5
|
39.2
|
1.0
|
|
OD1
|
P:ASP99
|
3.1
|
36.3
|
1.0
|
|
CB
|
P:SER170
|
3.4
|
39.2
|
1.0
|
|
O1B
|
P:ADP601
|
3.5
|
6.9
|
1.0
|
|
F1
|
P:AF3603
|
3.5
|
6.8
|
1.0
|
|
PA
|
P:ADP601
|
3.5
|
6.9
|
1.0
|
|
OD2
|
P:ASP99
|
3.7
|
36.3
|
1.0
|
|
CG
|
P:ASP99
|
3.8
|
36.3
|
1.0
|
|
CE
|
P:LYS171
|
3.9
|
40.0
|
1.0
|
|
F2
|
P:AF3603
|
3.9
|
6.8
|
1.0
|
|
NZ
|
P:LYS171
|
4.0
|
40.0
|
1.0
|
|
O
|
P:SER167
|
4.1
|
37.2
|
1.0
|
|
AL
|
P:AF3603
|
4.1
|
6.8
|
1.0
|
|
CA
|
P:SER167
|
4.2
|
37.2
|
1.0
|
|
O3A
|
P:ADP601
|
4.3
|
6.9
|
1.0
|
|
O5'
|
P:ADP601
|
4.3
|
6.9
|
1.0
|
|
C5'
|
P:ADP601
|
4.4
|
6.9
|
1.0
|
|
O2A
|
P:ADP601
|
4.4
|
6.9
|
1.0
|
|
O
|
P:THR166
|
4.6
|
38.0
|
1.0
|
|
C
|
P:SER167
|
4.6
|
37.2
|
1.0
|
|
PB
|
P:ADP601
|
4.6
|
6.9
|
1.0
|
|
CD
|
P:LYS171
|
4.6
|
40.0
|
1.0
|
|
CA
|
P:SER170
|
4.8
|
39.2
|
1.0
|
|
CB
|
P:SER167
|
4.8
|
37.2
|
1.0
|
|
Reference:
Y.Cong,
C.X.Liu.
Pathway and Mechanism of Tubulin Folding Mediated By Tric/Cct Conjugated with Its Atpase Cycle Revealed By Cryo-Em To Be Published.
Page generated: Tue Apr 25 22:25:11 2023
|
