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Magnesium in PDB 7x0v: Cryo-Em Structure of Human Tric-Adp-Alfx

Other elements in 7x0v:

The structure of Cryo-Em Structure of Human Tric-Adp-Alfx also contains other interesting chemical elements:

Aluminium (Al) 16 atoms
Fluorine (F) 48 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Human Tric-Adp-Alfx (pdb code 7x0v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cryo-Em Structure of Human Tric-Adp-Alfx, PDB code: 7x0v:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 7x0v

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Magnesium binding site 1 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg602

b:4.6
occ:1.00
CG K:ASP90 1.2 39.0 1.0
OD1 K:ASP90 1.2 39.0 1.0
OD2 K:ASP90 1.3 39.0 1.0
O3A K:ADP601 2.0 5.0 1.0
O2A K:ADP601 2.1 5.0 1.0
F1 K:AF3603 2.1 6.1 1.0
PA K:ADP601 2.5 5.0 1.0
CB K:ASP90 2.7 39.0 1.0
PB K:ADP601 3.2 5.0 1.0
O2B K:ADP601 3.2 5.0 1.0
O1A K:ADP601 3.6 5.0 1.0
CA K:ASP90 3.6 39.0 1.0
AL K:AF3603 3.7 6.1 1.0
O5' K:ADP601 3.7 5.0 1.0
O3B K:ADP601 3.8 5.0 1.0
N K:GLY91 3.8 38.1 1.0
OD2 K:ASP393 3.9 41.1 1.0
NZ K:LYS159 4.0 38.1 1.0
OD1 K:ASP393 4.2 41.1 1.0
C K:ASP90 4.2 39.0 1.0
OG1 K:THR158 4.2 39.5 1.0
O1B K:ADP601 4.4 5.0 1.0
CG K:ASP393 4.4 41.1 1.0
F3 K:AF3603 4.7 6.1 1.0
C5' K:ADP601 4.7 5.0 1.0
N K:ASP90 4.8 39.0 1.0
F2 K:AF3603 4.9 6.1 1.0
CA K:GLY91 4.9 38.1 1.0

Magnesium binding site 2 out of 16 in 7x0v

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Magnesium binding site 2 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg602

b:9.8
occ:1.00
O2A J:ADP601 2.0 6.9 1.0
OG J:SER170 2.5 41.2 1.0
OD1 J:ASP99 3.2 39.5 1.0
O2B J:ADP601 3.5 6.9 1.0
CB J:SER170 3.5 41.2 1.0
NZ J:LYS171 3.5 41.9 1.0
PA J:ADP601 3.5 6.9 1.0
F1 J:AF3603 3.5 6.8 1.0
CE J:LYS171 3.7 41.9 1.0
OD2 J:ASP99 3.7 39.5 1.0
CG J:ASP99 3.8 39.5 1.0
F2 J:AF3603 3.9 6.8 1.0
O J:SER167 4.1 42.5 1.0
AL J:AF3603 4.1 6.8 1.0
CA J:SER167 4.2 42.5 1.0
O3A J:ADP601 4.3 6.9 1.0
O5' J:ADP601 4.3 6.9 1.0
CD J:LYS171 4.4 41.9 1.0
C5' J:ADP601 4.4 6.9 1.0
O1A J:ADP601 4.4 6.9 1.0
O J:THR166 4.5 41.8 1.0
C J:SER167 4.6 42.5 1.0
PB J:ADP601 4.6 6.9 1.0
CB J:SER167 4.8 42.5 1.0
CA J:SER170 4.8 41.2 1.0
OG J:SER167 5.0 42.5 1.0

Magnesium binding site 3 out of 16 in 7x0v

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Magnesium binding site 3 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg602

b:9.8
occ:1.00
O2A H:ADP601 2.0 6.9 1.0
O H:ALA162 3.4 38.5 1.0
O2B H:ADP601 3.5 6.9 1.0
F1 H:AF3603 3.5 6.8 1.0
PA H:ADP601 3.5 6.9 1.0
CB H:ASP92 3.9 40.4 1.0
F2 H:AF3603 3.9 6.8 1.0
CA H:ALA162 4.0 38.5 1.0
CE H:LYS166 4.1 40.4 1.0
C H:ALA162 4.1 38.5 1.0
AL H:AF3603 4.1 6.8 1.0
O H:SER164 4.1 41.0 1.0
OG H:SER165 4.1 40.7 1.0
O H:THR161 4.1 39.7 1.0
O3A H:ADP601 4.3 6.9 1.0
O5' H:ADP601 4.3 6.9 1.0
C5' H:ADP601 4.4 6.9 1.0
O1A H:ADP601 4.4 6.9 1.0
O H:ASP92 4.4 40.4 1.0
NZ H:LYS166 4.5 40.4 1.0
PB H:ADP601 4.6 6.9 1.0
CA H:ASP92 4.7 40.4 1.0
CB H:ALA162 4.7 38.5 1.0
C H:ASP92 4.8 40.4 1.0
N H:ALA162 5.0 38.5 1.0
C H:THR161 5.0 39.7 1.0

Magnesium binding site 4 out of 16 in 7x0v

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Magnesium binding site 4 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:9.8
occ:1.00
O2A G:ADP601 2.0 6.9 1.0
O G:SER159 3.0 32.9 1.0
OD1 G:ASP93 3.0 38.7 1.0
CE G:LYS163 3.2 35.6 1.0
O2B G:ADP601 3.5 6.9 1.0
CB G:ASP93 3.5 38.7 1.0
F1 G:AF3603 3.5 6.8 1.0
PA G:ADP601 3.5 6.9 1.0
NZ G:LYS163 3.6 35.6 1.0
CG G:ASP93 3.6 38.7 1.0
F2 G:AF3603 3.9 6.8 1.0
CB G:THR162 4.1 37.9 1.0
AL G:AF3603 4.1 6.8 1.0
C G:SER159 4.1 32.9 1.0
CD G:LYS163 4.2 35.6 1.0
CG G:LYS163 4.2 35.6 1.0
OG1 G:THR162 4.3 37.9 1.0
O3A G:ADP601 4.3 6.9 1.0
O5' G:ADP601 4.3 6.9 1.0
CA G:ASP93 4.4 38.7 1.0
C5' G:ADP601 4.4 6.9 1.0
O1A G:ADP601 4.4 6.9 1.0
CA G:SER159 4.6 32.9 1.0
PB G:ADP601 4.6 6.9 1.0
CG2 G:THR162 4.6 37.9 1.0
O G:ASP93 4.7 38.7 1.0
OD2 G:ASP93 4.8 38.7 1.0
CB G:SER159 5.0 32.9 1.0
C G:ASP93 5.0 38.7 1.0

Magnesium binding site 5 out of 16 in 7x0v

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Magnesium binding site 5 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:9.8
occ:1.00
O2A E:ADP601 2.0 6.9 1.0
OG E:SER173 3.0 35.9 1.0
O E:THR170 3.2 36.0 1.0
O2B E:ADP601 3.5 6.9 1.0
F1 E:AF3603 3.5 6.8 1.0
PA E:ADP601 3.5 6.9 1.0
CG2 E:THR170 3.7 36.0 1.0
CA E:THR170 3.8 36.0 1.0
C E:THR170 3.9 36.0 1.0
F2 E:AF3603 3.9 6.8 1.0
O E:ASP102 4.1 39.0 1.0
AL E:AF3603 4.1 6.8 1.0
CB E:SER173 4.2 35.9 1.0
O3A E:ADP601 4.3 6.9 1.0
O5' E:ADP601 4.3 6.9 1.0
C5' E:ADP601 4.4 6.9 1.0
CB E:THR170 4.4 36.0 1.0
O1A E:ADP601 4.4 6.9 1.0
CE E:LYS174 4.4 35.1 1.0
O E:THR169 4.5 36.2 1.0
PB E:ADP601 4.6 6.9 1.0
NZ E:LYS174 4.9 35.1 1.0

Magnesium binding site 6 out of 16 in 7x0v

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Magnesium binding site 6 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg602

b:9.8
occ:1.00
O2A I:ADP601 2.0 6.9 1.0
O2B I:ADP601 3.5 6.9 1.0
F1 I:AF3603 3.5 6.8 1.0
PA I:ADP601 3.5 6.9 1.0
O I:SER170 3.7 35.6 1.0
CB I:SER170 3.8 35.6 1.0
CA I:SER170 3.8 35.6 1.0
OG I:SER173 3.8 36.1 1.0
OD1 I:ASP104 3.9 36.4 1.0
F2 I:AF3603 3.9 6.8 1.0
AL I:AF3603 4.1 6.8 1.0
CE I:LYS174 4.2 35.8 1.0
C I:SER170 4.2 35.6 1.0
O3A I:ADP601 4.3 6.9 1.0
O5' I:ADP601 4.3 6.9 1.0
C5' I:ADP601 4.4 6.9 1.0
O1A I:ADP601 4.4 6.9 1.0
O I:ASP104 4.5 36.4 1.0
NZ I:LYS174 4.5 35.8 1.0
PB I:ADP601 4.6 6.9 1.0
CB I:ASP104 4.7 36.4 1.0
CG I:ASP104 4.7 36.4 1.0
OD2 I:ASP407 4.8 36.7 1.0
CB I:ASP407 4.9 36.7 1.0
CA I:ASP104 4.9 36.4 1.0

Magnesium binding site 7 out of 16 in 7x0v

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Magnesium binding site 7 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:7.1
occ:1.00
O2A B:ADP601 2.0 5.0 1.0
OD1 B:ASP97 2.1 38.3 1.0
F1 B:AF3603 2.3 7.0 1.0
OD2 B:ASP97 2.5 38.3 1.0
CG B:ASP97 2.7 38.3 1.0
O2B B:ADP601 3.1 5.0 1.0
PA B:ADP601 3.4 5.0 1.0
CG2 B:THR166 3.8 37.0 1.0
OG B:SER169 3.8 41.6 1.0
O3A B:ADP601 3.9 5.0 1.0
AL B:AF3603 4.0 7.0 1.0
O5' B:ADP601 4.1 5.0 1.0
CB B:ASP97 4.2 38.3 1.0
PB B:ADP601 4.2 5.0 1.0
CA B:THR166 4.2 37.0 1.0
C5' B:ADP601 4.3 5.0 1.0
O B:THR166 4.3 37.0 1.0
CB B:THR166 4.4 37.0 1.0
N B:GLY98 4.4 38.0 1.0
O1A B:ADP601 4.6 5.0 1.0
OG1 B:THR166 4.7 37.0 1.0
C B:THR166 4.8 37.0 1.0
CA B:ASP97 4.8 38.3 1.0
F3 B:AF3603 4.9 7.0 1.0

Magnesium binding site 8 out of 16 in 7x0v

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Magnesium binding site 8 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:9.8
occ:1.00
OD1 A:ASP88 1.7 37.4 1.0
O2A A:ADP601 2.0 6.9 1.0
CG A:ASP88 2.5 37.4 1.0
OD2 A:ASP88 2.5 37.4 1.0
O A:SER155 3.3 37.9 1.0
OG A:SER158 3.4 39.2 1.0
O2B A:ADP601 3.5 6.9 1.0
F1 A:AF3603 3.5 6.8 1.0
PA A:ADP601 3.5 6.9 1.0
NZ A:LYS159 3.5 38.9 1.0
OG A:SER155 3.6 37.9 1.0
CA A:SER155 3.8 37.9 1.0
CE A:LYS159 3.9 38.9 1.0
F2 A:AF3603 3.9 6.8 1.0
C A:SER155 4.0 37.9 1.0
AL A:AF3603 4.1 6.8 1.0
CB A:ASP88 4.2 37.4 1.0
CB A:SER155 4.2 37.9 1.0
O3A A:ADP601 4.3 6.9 1.0
O5' A:ADP601 4.3 6.9 1.0
C5' A:ADP601 4.4 6.9 1.0
O1A A:ADP601 4.4 6.9 1.0
PB A:ADP601 4.6 6.9 1.0
CB A:SER158 4.6 39.2 1.0
CD A:LYS159 4.7 38.9 1.0
O A:THR154 4.7 36.5 1.0
N A:SER155 5.0 37.9 1.0

Magnesium binding site 9 out of 16 in 7x0v

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Magnesium binding site 9 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
z:Mg602

b:4.6
occ:1.00
OD1 z:ASP90 1.0 36.4 1.0
CG z:ASP90 1.2 36.4 1.0
OD2 z:ASP90 1.4 36.4 1.0
O3A z:ADP601 2.0 5.0 1.0
O1A z:ADP601 2.1 5.0 1.0
F1 z:AF3603 2.1 6.1 1.0
PA z:ADP601 2.5 5.0 1.0
CB z:ASP90 2.7 36.4 1.0
PB z:ADP601 3.2 5.0 1.0
O2B z:ADP601 3.2 5.0 1.0
CA z:ASP90 3.4 36.4 1.0
O2A z:ADP601 3.6 5.0 1.0
AL z:AF3603 3.7 6.1 1.0
N z:GLY91 3.7 36.2 1.0
O5' z:ADP601 3.7 5.0 1.0
O1B z:ADP601 3.8 5.0 1.0
NZ z:LYS159 3.9 35.4 1.0
C z:ASP90 4.1 36.4 1.0
OD1 z:ASP393 4.1 38.5 1.0
OD2 z:ASP393 4.1 38.5 1.0
OG1 z:THR158 4.2 36.5 1.0
O3B z:ADP601 4.4 5.0 1.0
CG z:ASP393 4.6 38.5 1.0
F3 z:AF3603 4.7 6.1 1.0
N z:ASP90 4.7 36.4 1.0
C5' z:ADP601 4.7 5.0 1.0
CA z:GLY91 4.8 36.2 1.0
F2 z:AF3603 4.9 6.1 1.0

Magnesium binding site 10 out of 16 in 7x0v

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Magnesium binding site 10 out of 16 in the Cryo-Em Structure of Human Tric-Adp-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Human Tric-Adp-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Mg602

b:9.8
occ:1.00
O1A P:ADP601 2.0 6.9 1.0
OG P:SER170 2.5 39.2 1.0
OD1 P:ASP99 3.1 36.3 1.0
CB P:SER170 3.4 39.2 1.0
O1B P:ADP601 3.5 6.9 1.0
F1 P:AF3603 3.5 6.8 1.0
PA P:ADP601 3.5 6.9 1.0
OD2 P:ASP99 3.7 36.3 1.0
CG P:ASP99 3.8 36.3 1.0
CE P:LYS171 3.9 40.0 1.0
F2 P:AF3603 3.9 6.8 1.0
NZ P:LYS171 4.0 40.0 1.0
O P:SER167 4.1 37.2 1.0
AL P:AF3603 4.1 6.8 1.0
CA P:SER167 4.2 37.2 1.0
O3A P:ADP601 4.3 6.9 1.0
O5' P:ADP601 4.3 6.9 1.0
C5' P:ADP601 4.4 6.9 1.0
O2A P:ADP601 4.4 6.9 1.0
O P:THR166 4.6 38.0 1.0
C P:SER167 4.6 37.2 1.0
PB P:ADP601 4.6 6.9 1.0
CD P:LYS171 4.6 40.0 1.0
CA P:SER170 4.8 39.2 1.0
CB P:SER167 4.8 37.2 1.0

Reference:

Y.Cong, C.X.Liu. Pathway and Mechanism of Tubulin Folding Mediated By Tric/Cct Conjugated with Its Atpase Cycle Revealed By Cryo-Em To Be Published.
Page generated: Thu Oct 3 11:45:24 2024

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