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Magnesium in PDB 7x0z: Cryo-Em Structure of Human ABCD1 E630Q in the Presence of Atp and Magnesium in Outward-Facing State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Human ABCD1 E630Q in the Presence of Atp and Magnesium in Outward-Facing State (pdb code 7x0z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Human ABCD1 E630Q in the Presence of Atp and Magnesium in Outward-Facing State, PDB code: 7x0z:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7x0z

Go back to Magnesium Binding Sites List in 7x0z
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Human ABCD1 E630Q in the Presence of Atp and Magnesium in Outward-Facing State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human ABCD1 E630Q in the Presence of Atp and Magnesium in Outward-Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:27.1
occ:1.00
OG A:SER514 2.0 26.0 1.0
O1G A:ATP802 2.2 37.3 1.0
OE1 A:GLN544 2.7 23.9 1.0
OD1 A:ASP629 2.8 25.2 1.0
O1B A:ATP802 2.9 37.3 1.0
CD A:GLN544 3.3 23.9 1.0
CB A:SER514 3.4 26.0 1.0
PG A:ATP802 3.6 37.3 1.0
NE2 A:GLN630 3.7 27.6 1.0
NE2 A:GLN544 3.7 23.9 1.0
CG A:ASP629 3.7 25.2 1.0
OD2 A:ASP629 3.8 25.2 1.0
N A:SER514 4.0 26.0 1.0
PB A:ATP802 4.0 37.3 1.0
CG2 A:ILE657 4.0 25.4 1.0
O3B A:ATP802 4.1 37.3 1.0
CA A:SER514 4.1 26.0 1.0
O3G A:ATP802 4.2 37.3 1.0
CD A:GLN630 4.3 27.6 1.0
CG A:GLN544 4.4 23.9 1.0
CE A:LYS513 4.5 28.0 1.0
O2B A:ATP802 4.6 37.3 1.0
CB A:GLN544 4.6 23.9 1.0
O2G A:ATP802 4.7 37.3 1.0
CB A:LYS513 4.7 28.0 1.0
CG A:GLN630 4.7 27.6 1.0
CD1 A:ILE657 4.9 25.4 1.0
C A:LYS513 4.9 28.0 1.0
OE1 A:GLN630 5.0 27.6 1.0

Magnesium binding site 2 out of 2 in 7x0z

Go back to Magnesium Binding Sites List in 7x0z
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Human ABCD1 E630Q in the Presence of Atp and Magnesium in Outward-Facing State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human ABCD1 E630Q in the Presence of Atp and Magnesium in Outward-Facing State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg801

b:27.8
occ:1.00
OG B:SER514 2.1 25.3 1.0
OE1 B:GLN544 2.1 23.9 1.0
O3B B:ATP802 2.8 28.0 1.0
CB B:SER514 2.9 25.3 1.0
CD B:GLN544 3.3 23.9 1.0
O1G B:ATP802 3.6 28.0 1.0
O2A B:ATP802 3.8 28.0 1.0
PB B:ATP802 3.8 28.0 1.0
PG B:ATP802 3.9 28.0 1.0
O1B B:ATP802 3.9 28.0 1.0
N A:GLY607 4.0 23.9 1.0
NE2 B:GLN544 4.0 23.9 1.0
OD2 B:ASP629 4.2 26.8 1.0
CA B:SER514 4.2 25.3 1.0
O3A B:ATP802 4.2 28.0 1.0
CB B:GLN544 4.3 23.9 1.0
CG B:GLN544 4.3 23.9 1.0
N B:SER514 4.4 25.3 1.0
PA B:ATP802 4.5 28.0 1.0
OD1 B:ASP629 4.5 26.8 1.0
CA A:GLY607 4.7 23.9 1.0
O1A B:ATP802 4.7 28.0 1.0
CG B:ASP629 4.8 26.8 1.0
CA A:SER606 4.8 25.5 1.0
O3G B:ATP802 4.8 28.0 1.0
CB A:SER606 4.8 25.5 1.0
C A:SER606 4.9 25.5 1.0
O2G B:ATP802 5.0 28.0 1.0

Reference:

C.Xiong, L.N.Jia, W.X.Xiong, X.T.Wu, L.L.Xiong, T.H.Wang, D.Zhou, Z.Hong, Z.Liu, L.Tang. Structural Insights Into Substrate Recognition and Translocation of Human Peroxisomal Abc Transporter Aldp. Signal Transduct Target Ther V. 8 74 2023.
ISSN: ESSN 2059-3635
PubMed: 36810450
DOI: 10.1038/S41392-022-01280-9
Page generated: Thu Oct 3 11:45:12 2024

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