Magnesium in PDB 7x1y: Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein (pdb code 7x1y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein, PDB code: 7x1y:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg903 b:50.6 occ:1.00 O3G A:ATP901 2.1 53.5 1.0 OG1 A:THR295 2.1 49.4 1.0 O2G A:ATP901 2.8 53.5 1.0 PG A:ATP901 2.8 53.5 1.0 O3B A:ATP901 3.1 53.5 1.0 OD1 A:ASP378 3.2 44.5 1.0 OD2 A:ASP378 3.4 44.5 1.0 OE2 A:GLU318 3.5 52.8 1.0 CB A:THR295 3.5 49.4 1.0 CG A:ASP378 3.7 44.5 1.0 OG A:SER379 3.8 43.5 1.0 N A:THR295 3.9 49.4 1.0 CA A:THR295 4.1 49.4 1.0 CG2 A:THR295 4.2 49.4 1.0 O1G A:ATP901 4.2 53.5 1.0 PB A:ATP901 4.3 53.5 1.0 O3A A:ATP901 4.5 53.5 1.0 CD A:GLU318 4.5 52.8 1.0 CG2 A:THR413 4.6 39.9 1.0 O1B A:ATP901 4.7 53.5 1.0 OE2 A:GLU319 4.7 58.1 1.0 CB A:LYS294 4.7 45.2 1.0 C A:LYS294 4.8 45.2 1.0 CG A:GLU318 4.9 52.8 1.0

Magnesium binding site 2 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg904 b:34.6 occ:1.00 OG1 A:THR53 2.0 30.4 1.0 O1G A:ATP902 2.1 32.9 1.0 O3B A:ATP902 2.7 32.9 1.0 PG A:ATP902 2.8 32.9 1.0 CB A:THR53 3.3 30.4 1.0 O2G A:ATP902 3.5 32.9 1.0 OE2 A:GLU78 3.8 52.1 1.0 O3A A:ATP902 4.0 32.9 1.0 CG2 A:THR53 4.0 30.4 1.0 PB A:ATP902 4.0 32.9 1.0 NH2 B:ARG226 4.1 30.5 1.0 O3G A:ATP902 4.2 32.9 1.0 OE2 A:GLU77 4.2 55.3 1.0 OD2 A:ASP145 4.3 41.4 1.0 CA A:THR53 4.4 30.4 1.0 NE B:ARG226 4.6 30.5 1.0 N A:THR53 4.6 30.4 1.0 CZ B:ARG226 4.7 30.5 1.0 O2A A:ATP902 4.7 32.9 1.0 CD A:GLU77 4.7 55.3 1.0 O2B A:ATP902 4.8 32.9 1.0 PA A:ATP902 4.9 32.9 1.0 OD1 A:ASP145 5.0 41.4 1.0 CD A:GLU78 5.0 52.1 1.0 OE1 A:GLU77 5.0 55.3 1.0

Magnesium binding site 3 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg903 b:51.5 occ:1.00 O3G B:ATP901 2.1 51.7 1.0 OG1 B:THR295 2.1 49.9 1.0 O2G B:ATP901 2.4 51.7 1.0 PG B:ATP901 2.6 51.7 1.0 O3B B:ATP901 3.0 51.7 1.0 OD1 B:ASP378 3.3 44.4 1.0 OD2 B:ASP378 3.5 44.4 1.0 CB B:THR295 3.5 49.9 1.0 OE2 B:GLU318 3.6 54.2 1.0 CG B:ASP378 3.8 44.4 1.0 OG B:SER379 3.9 43.0 1.0 N B:THR295 3.9 49.9 1.0 O1G B:ATP901 4.1 51.7 1.0 CA B:THR295 4.1 49.9 1.0 CG2 B:THR295 4.2 49.9 1.0 PB B:ATP901 4.3 51.7 1.0 O3A B:ATP901 4.4 51.7 1.0 CD B:GLU318 4.6 54.2 1.0 OE2 B:GLU319 4.6 59.1 1.0 O1B B:ATP901 4.7 51.7 1.0 CG2 B:THR413 4.7 39.4 1.0 CB B:LYS294 4.8 44.0 1.0 C B:LYS294 4.8 44.0 1.0 CG B:GLU318 4.9 54.2 1.0

Magnesium binding site 4 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg904 b:35.3 occ:1.00 OG1 B:THR53 2.0 30.3 1.0 O1G B:ATP902 2.1 33.6 1.0 O3B B:ATP902 2.8 33.6 1.0 PG B:ATP902 2.8 33.6 1.0 CB B:THR53 3.3 30.3 1.0 O2G B:ATP902 3.5 33.6 1.0 OE2 B:GLU78 3.7 54.6 1.0 CG2 B:THR53 4.0 30.3 1.0 O3A B:ATP902 4.0 33.6 1.0 NH2 C:ARG226 4.0 31.1 1.0 PB B:ATP902 4.1 33.6 1.0 O3G B:ATP902 4.2 33.6 1.0 OE2 B:GLU77 4.3 57.9 1.0 OD2 B:ASP145 4.3 42.7 1.0 CA B:THR53 4.4 30.3 1.0 NE C:ARG226 4.6 31.1 1.0 CZ C:ARG226 4.6 31.1 1.0 N B:THR53 4.6 30.3 1.0 O2A B:ATP902 4.7 33.6 1.0 CD B:GLU77 4.7 57.9 1.0 O2B B:ATP902 4.8 33.6 1.0 PA B:ATP902 4.9 33.6 1.0 CD B:GLU78 4.9 54.6 1.0 OE1 B:GLU77 4.9 57.9 1.0

Magnesium binding site 5 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg903 b:50.7 occ:1.00 O3G C:ATP901 2.1 51.5 1.0 OG1 C:THR295 2.1 48.5 1.0 OD1 C:ASP378 2.9 43.1 1.0 OD2 C:ASP378 2.9 43.1 1.0 CG C:ASP378 3.3 43.1 1.0 CB C:THR295 3.4 48.5 1.0 PG C:ATP901 3.4 51.5 1.0 O3B C:ATP901 3.7 51.5 1.0 OE2 C:GLU318 3.7 53.2 1.0 N C:THR295 3.7 48.5 1.0 OG C:SER379 3.8 42.5 1.0 CA C:THR295 3.8 48.5 1.0 CG2 C:THR295 4.0 48.5 1.0 O2G C:ATP901 4.1 51.5 1.0 CG2 C:THR413 4.4 38.1 1.0 C C:LYS294 4.5 44.1 1.0 O1G C:ATP901 4.5 51.5 1.0 CB C:LYS294 4.6 44.1 1.0 PB C:ATP901 4.7 51.5 1.0 CD C:GLU318 4.7 53.2 1.0 CB C:ASP378 4.7 43.1 1.0 O1B C:ATP901 4.8 51.5 1.0 O3A C:ATP901 4.8 51.5 1.0 OE2 C:GLU319 4.9 61.5 1.0

Magnesium binding site 6 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg904 b:35.0 occ:1.00 OG1 C:THR53 2.0 30.5 1.0 O1G C:ATP902 2.1 33.7 1.0 O3B C:ATP902 2.7 33.7 1.0 PG C:ATP902 2.8 33.7 1.0 CB C:THR53 3.3 30.5 1.0 O2G C:ATP902 3.4 33.7 1.0 OE2 C:GLU78 3.8 54.8 1.0 O3A C:ATP902 4.0 33.7 1.0 PB C:ATP902 4.0 33.7 1.0 NH2 D:ARG226 4.0 31.1 1.0 CG2 C:THR53 4.0 30.5 1.0 O3G C:ATP902 4.2 33.7 1.0 OD2 C:ASP145 4.4 42.6 1.0 OE1 C:GLU77 4.4 57.5 1.0 CA C:THR53 4.4 30.5 1.0 NE D:ARG226 4.6 31.1 1.0 CZ D:ARG226 4.6 31.1 1.0 N C:THR53 4.6 30.5 1.0 CD C:GLU77 4.7 57.5 1.0 O2B C:ATP902 4.7 33.7 1.0 O2A C:ATP902 4.8 33.7 1.0 OE2 C:GLU77 4.9 57.5 1.0 NZ C:LYS52 5.0 26.1 1.0 PA C:ATP902 5.0 33.7 1.0

Magnesium binding site 7 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg903 b:50.8 occ:1.00 O3G D:ATP901 2.1 53.1 1.0 OG1 D:THR295 2.1 49.3 1.0 O2G D:ATP901 2.4 53.1 1.0 PG D:ATP901 2.7 53.1 1.0 OD1 D:ASP378 3.1 44.3 1.0 O3B D:ATP901 3.2 53.1 1.0 OD2 D:ASP378 3.3 44.3 1.0 CB D:THR295 3.4 49.3 1.0 CG D:ASP378 3.6 44.3 1.0 OE2 D:GLU318 3.7 53.1 1.0 OG D:SER379 3.9 43.3 1.0 N D:THR295 3.9 49.3 1.0 CA D:THR295 4.0 49.3 1.0 CG2 D:THR295 4.0 49.3 1.0 O1G D:ATP901 4.1 53.1 1.0 PB D:ATP901 4.4 53.1 1.0 OE1 D:GLU319 4.5 59.9 1.0 O3A D:ATP901 4.5 53.1 1.0 CD D:GLU318 4.5 53.1 1.0 CG2 D:THR413 4.7 40.0 1.0 C D:LYS294 4.8 45.0 1.0 O1B D:ATP901 4.8 53.1 1.0 CB D:LYS294 4.8 45.0 1.0 CG D:GLU318 5.0 53.1 1.0

Magnesium binding site 8 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg904 b:34.2 occ:1.00 OG1 D:THR53 2.0 30.7 1.0 O1G D:ATP902 2.1 33.6 1.0 O3B D:ATP902 2.7 33.6 1.0 PG D:ATP902 2.8 33.6 1.0 CB D:THR53 3.3 30.7 1.0 O2G D:ATP902 3.5 33.6 1.0 OE2 D:GLU78 3.8 52.7 1.0 O3A D:ATP902 4.0 33.6 1.0 CG2 D:THR53 4.0 30.7 1.0 PB D:ATP902 4.0 33.6 1.0 NH2 E:ARG226 4.1 30.6 1.0 O3G D:ATP902 4.2 33.6 1.0 OE2 D:GLU77 4.2 56.3 1.0 OD2 D:ASP145 4.3 41.6 1.0 CA D:THR53 4.4 30.7 1.0 NE E:ARG226 4.6 30.6 1.0 N D:THR53 4.6 30.7 1.0 CZ E:ARG226 4.7 30.6 1.0 O2A D:ATP902 4.7 33.6 1.0 CD D:GLU77 4.7 56.3 1.0 O2B D:ATP902 4.8 33.6 1.0 PA D:ATP902 4.9 33.6 1.0 OD1 D:ASP145 5.0 41.6 1.0 CD D:GLU78 5.0 52.7 1.0 OE1 D:GLU77 5.0 56.3 1.0

Magnesium binding site 9 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg903 b:52.5 occ:1.00 OG1 E:THR295 2.1 49.9 1.0 O1G E:ATP901 2.1 51.9 1.0 O3G E:ATP901 2.2 51.9 1.0 PG E:ATP901 2.5 51.9 1.0 O3B E:ATP901 3.1 51.9 1.0 OD2 E:ASP378 3.3 44.6 1.0 OD1 E:ASP378 3.4 44.6 1.0 CB E:THR295 3.5 49.9 1.0 CG E:ASP378 3.8 44.6 1.0 OE2 E:GLU318 3.8 53.7 1.0 O2G E:ATP901 3.9 51.9 1.0 OG E:SER379 3.9 43.6 1.0 N E:THR295 4.0 49.9 1.0 CA E:THR295 4.1 49.9 1.0 CG2 E:THR295 4.1 49.9 1.0 PB E:ATP901 4.3 51.9 1.0 OE2 E:GLU319 4.4 58.3 1.0 O3A E:ATP901 4.4 51.9 1.0 CD E:GLU318 4.8 53.7 1.0 O1B E:ATP901 4.8 51.9 1.0 CG2 E:THR413 4.8 39.6 1.0 C E:LYS294 4.9 43.9 1.0 CB E:LYS294 4.9 43.9 1.0

Magnesium binding site 10 out of 12 in the Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of the Phosphorylation-Site Double Mutant S431A/T432A of the Kaic Circadian Clock Protein within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg904 b:34.2 occ:1.00 OG1 E:THR53 2.0 30.2 1.0 O1G E:ATP902 2.1 33.9 1.0 O3B E:ATP902 2.8 33.9 1.0 PG E:ATP902 2.8 33.9 1.0 CB E:THR53 3.3 30.2 1.0 O2G E:ATP902 3.5 33.9 1.0 OE2 E:GLU78 3.7 55.3 1.0 CG2 E:THR53 4.0 30.2 1.0 O3A E:ATP902 4.0 33.9 1.0 NH2 F:ARG226 4.0 30.9 1.0 PB E:ATP902 4.1 33.9 1.0 O3G E:ATP902 4.2 33.9 1.0 OE2 E:GLU77 4.3 58.4 1.0 OD2 E:ASP145 4.3 43.4 1.0 CA E:THR53 4.4 30.2 1.0 NE F:ARG226 4.6 30.9 1.0 CZ F:ARG226 4.6 30.9 1.0 N E:THR53 4.6 30.2 1.0 O2A E:ATP902 4.7 33.9 1.0 CD E:GLU77 4.7 58.4 1.0 O2B E:ATP902 4.8 33.9 1.0 PA E:ATP902 4.9 33.9 1.0 CD E:GLU78 4.9 55.3 1.0 OE1 E:GLU77 4.9 58.4 1.0

X.Han, D.L.Zhang, L.Hong, D.Q.Yu, Z.L.Wu, T.Yang, M.J.Rust, Y.H.Tu, Q.Ouyang. A Cooperative Switch Within the Kaic Hexamer Revealed By Cryo-Em To Be Published.