Atomistry » Magnesium » PDB 7wys-7xab » 7x4g
Atomistry »
  Magnesium »
    PDB 7wys-7xab »
      7x4g »

Magnesium in PDB 7x4g: Cd-Ntase Clcdne in Complex with Substrate Utp

Protein crystallography data

The structure of Cd-Ntase Clcdne in Complex with Substrate Utp, PDB code: 7x4g was solved by Y.Chen, T.P.Ko, C.S.Yang, Y.C.Wang, M.H.Hou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.00 / 2.60
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 132.581, 132.581, 132.581, 90, 90, 90
R / Rfree (%) 16.8 / 20.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cd-Ntase Clcdne in Complex with Substrate Utp (pdb code 7x4g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cd-Ntase Clcdne in Complex with Substrate Utp, PDB code: 7x4g:

Magnesium binding site 1 out of 1 in 7x4g

Go back to Magnesium Binding Sites List in 7x4g
Magnesium binding site 1 out of 1 in the Cd-Ntase Clcdne in Complex with Substrate Utp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cd-Ntase Clcdne in Complex with Substrate Utp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:30.8
occ:1.00
O3G A:UTP401 2.0 28.8 1.0
OD2 A:ASP67 2.0 38.2 1.0
O2A A:UTP401 2.1 31.8 1.0
O A:HOH515 2.1 33.4 1.0
O A:HOH541 2.1 33.0 1.0
O1B A:UTP401 2.1 27.0 1.0
CG A:ASP67 2.9 36.4 1.0
OD1 A:ASP67 3.2 35.5 1.0
PB A:UTP401 3.3 31.5 1.0
PG A:UTP401 3.3 43.8 1.0
PA A:UTP401 3.4 31.7 1.0
O3B A:UTP401 3.7 44.9 1.0
O3A A:UTP401 3.8 28.8 1.0
O A:HOH568 3.8 34.5 1.0
OG A:SER53 4.0 50.0 1.0
C5' A:UTP401 4.1 37.1 1.0
O3' A:UTP402 4.1 38.5 1.0
O2G A:UTP401 4.1 60.8 1.0
O5' A:UTP401 4.2 38.8 1.0
O A:ASP65 4.3 43.6 1.0
N A:SER53 4.3 34.9 1.0
CB A:ASP67 4.3 22.8 1.0
O1G A:UTP401 4.4 51.2 1.0
O A:HOH529 4.4 18.3 1.0
O1A A:UTP401 4.5 35.9 1.0
CA A:GLY52 4.5 27.0 1.0
O2B A:UTP401 4.6 39.2 1.0
O2' A:UTP402 4.7 39.4 1.0
O A:HOH602 4.8 40.4 1.0
CB A:SER53 4.9 40.6 1.0
N A:ASP67 4.9 33.2 1.0
C A:GLY52 5.0 28.7 1.0

Reference:

Y.Chen, T.P.Ko, C.S.Yang, Y.C.Wang, M.H.Hou. Structure and Function of Cyclic Di-Ump Synthesizing Cgas/Dncv-Like Nucleotidyltransferases To Be Published.
Page generated: Thu Oct 3 11:47:23 2024

Last articles

Na in 7Q78
Na in 7Q77
Na in 7Q76
Na in 7Q6Q
Na in 7Q75
Na in 7Q5F
Na in 7Q47
Na in 7Q3Z
Na in 7Q5E
Na in 7Q36
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy