Magnesium in PDB 7xxf: Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Other elements in 7xxf:
The structure of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
36;
Binding sites:
The binding sites of Magnesium atom in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
(pdb code 7xxf). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 36 binding sites of Magnesium where determined in the
Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis, PDB code: 7xxf:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 1 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg301
b:15.3
occ:1.00
|
MG
|
L:BCL301
|
0.0
|
15.3
|
1.0
|
NC
|
L:BCL301
|
2.0
|
15.2
|
1.0
|
NA
|
L:BCL301
|
2.0
|
18.5
|
1.0
|
ND
|
L:BCL301
|
2.0
|
12.4
|
1.0
|
NB
|
L:BCL301
|
2.1
|
12.3
|
1.0
|
NE2
|
L:HIS174
|
2.3
|
11.6
|
1.0
|
C4D
|
L:BCL301
|
3.0
|
12.6
|
1.0
|
C4A
|
L:BCL301
|
3.0
|
9.9
|
1.0
|
C4C
|
L:BCL301
|
3.0
|
12.1
|
1.0
|
C1A
|
L:BCL301
|
3.0
|
9.7
|
1.0
|
C1C
|
L:BCL301
|
3.0
|
9.7
|
1.0
|
CE1
|
L:HIS174
|
3.0
|
7.8
|
1.0
|
C1B
|
L:BCL301
|
3.1
|
8.4
|
1.0
|
C4B
|
L:BCL301
|
3.1
|
9.0
|
1.0
|
C1D
|
L:BCL301
|
3.2
|
13.2
|
1.0
|
CHB
|
L:BCL301
|
3.4
|
6.0
|
1.0
|
CD2
|
L:HIS174
|
3.4
|
11.1
|
1.0
|
CHC
|
L:BCL301
|
3.4
|
0.0
|
1.0
|
OBB
|
M:BCL403
|
3.4
|
23.9
|
1.0
|
CHA
|
L:BCL301
|
3.4
|
12.0
|
1.0
|
CHD
|
L:BCL301
|
3.5
|
7.0
|
1.0
|
CAB
|
M:BCL403
|
3.5
|
7.5
|
1.0
|
CBB
|
M:BCL403
|
3.6
|
6.4
|
1.0
|
C3D
|
L:BCL301
|
4.2
|
14.9
|
1.0
|
ND1
|
L:HIS174
|
4.2
|
13.7
|
1.0
|
C3B
|
M:BCL403
|
4.3
|
6.5
|
1.0
|
C3A
|
L:BCL301
|
4.3
|
16.4
|
1.0
|
C2A
|
L:BCL301
|
4.3
|
15.8
|
1.0
|
C3C
|
L:BCL301
|
4.3
|
18.4
|
1.0
|
C2C
|
L:BCL301
|
4.3
|
14.1
|
1.0
|
C3B
|
L:BCL301
|
4.4
|
3.5
|
1.0
|
C2B
|
L:BCL301
|
4.4
|
6.0
|
1.0
|
C2D
|
L:BCL301
|
4.4
|
17.9
|
1.0
|
CG
|
L:HIS174
|
4.4
|
12.2
|
1.0
|
CD2
|
L:PHE168
|
4.6
|
10.0
|
1.0
|
CE2
|
L:PHE168
|
4.9
|
7.5
|
1.0
|
CMA
|
L:BCL301
|
4.9
|
15.2
|
1.0
|
CBD
|
L:BCL301
|
4.9
|
15.6
|
1.0
|
|
Magnesium binding site 2 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 2 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg309
b:27.0
occ:1.00
|
MG
|
L:BCL309
|
0.0
|
27.0
|
1.0
|
NA
|
L:BCL309
|
2.0
|
24.0
|
1.0
|
NC
|
L:BCL309
|
2.0
|
18.6
|
1.0
|
ND
|
L:BCL309
|
2.0
|
18.5
|
1.0
|
NB
|
L:BCL309
|
2.0
|
22.2
|
1.0
|
NE2
|
M:HIS182
|
2.5
|
13.1
|
1.0
|
C4D
|
L:BCL309
|
2.9
|
14.9
|
1.0
|
C4A
|
L:BCL309
|
3.0
|
19.2
|
1.0
|
C1A
|
L:BCL309
|
3.0
|
18.9
|
1.0
|
C4C
|
L:BCL309
|
3.0
|
14.8
|
1.0
|
C1C
|
L:BCL309
|
3.0
|
21.3
|
1.0
|
C1B
|
L:BCL309
|
3.0
|
19.6
|
1.0
|
C4B
|
L:BCL309
|
3.1
|
13.1
|
1.0
|
C1D
|
L:BCL309
|
3.2
|
18.9
|
1.0
|
CD2
|
M:HIS182
|
3.2
|
8.2
|
1.0
|
CHB
|
L:BCL309
|
3.3
|
14.3
|
1.0
|
CHC
|
L:BCL309
|
3.4
|
14.2
|
1.0
|
CHA
|
L:BCL309
|
3.4
|
16.8
|
1.0
|
CHD
|
L:BCL309
|
3.5
|
11.1
|
1.0
|
CE1
|
M:HIS182
|
3.6
|
16.0
|
1.0
|
C3D
|
L:BCL309
|
4.2
|
14.6
|
1.0
|
C3A
|
L:BCL309
|
4.3
|
19.4
|
1.0
|
C2A
|
L:BCL309
|
4.3
|
20.9
|
1.0
|
C3C
|
L:BCL309
|
4.3
|
23.1
|
1.0
|
C2C
|
L:BCL309
|
4.3
|
19.8
|
1.0
|
C3B
|
L:BCL309
|
4.4
|
17.4
|
1.0
|
OBB
|
M:BPH404
|
4.4
|
34.1
|
1.0
|
C2B
|
L:BCL309
|
4.4
|
23.9
|
1.0
|
C2D
|
L:BCL309
|
4.4
|
19.1
|
1.0
|
CG
|
M:HIS182
|
4.5
|
13.2
|
1.0
|
ND1
|
M:HIS182
|
4.6
|
23.0
|
1.0
|
CBA
|
L:BCL309
|
4.7
|
23.3
|
1.0
|
CBD
|
L:BCL309
|
4.9
|
18.4
|
1.0
|
C24
|
M:I7D406
|
4.9
|
21.3
|
1.0
|
|
Magnesium binding site 3 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 3 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg402
b:22.5
occ:1.00
|
MG
|
M:BCL402
|
0.0
|
22.5
|
1.0
|
NA
|
M:BCL402
|
2.0
|
26.4
|
1.0
|
NC
|
M:BCL402
|
2.0
|
22.6
|
1.0
|
ND
|
M:BCL402
|
2.0
|
17.7
|
1.0
|
NB
|
M:BCL402
|
2.0
|
20.5
|
1.0
|
NE2
|
L:HIS154
|
2.6
|
13.2
|
1.0
|
C4D
|
M:BCL402
|
2.9
|
14.1
|
1.0
|
C1A
|
M:BCL402
|
3.0
|
18.6
|
1.0
|
C4A
|
M:BCL402
|
3.0
|
24.2
|
1.0
|
C4C
|
M:BCL402
|
3.0
|
18.7
|
1.0
|
C1C
|
M:BCL402
|
3.0
|
18.4
|
1.0
|
C1B
|
M:BCL402
|
3.0
|
16.9
|
1.0
|
C4B
|
M:BCL402
|
3.1
|
16.7
|
1.0
|
C1D
|
M:BCL402
|
3.2
|
18.5
|
1.0
|
CHB
|
M:BCL402
|
3.4
|
14.1
|
1.0
|
CHC
|
M:BCL402
|
3.4
|
13.6
|
1.0
|
CHA
|
M:BCL402
|
3.4
|
15.2
|
1.0
|
CD2
|
L:HIS154
|
3.4
|
12.5
|
1.0
|
CHD
|
M:BCL402
|
3.5
|
17.4
|
1.0
|
CE1
|
L:HIS154
|
3.6
|
13.7
|
1.0
|
C3D
|
M:BCL402
|
4.2
|
15.9
|
1.0
|
C3A
|
M:BCL402
|
4.3
|
20.2
|
1.0
|
C2A
|
M:BCL402
|
4.3
|
21.5
|
1.0
|
C3C
|
M:BCL402
|
4.3
|
15.8
|
1.0
|
C2C
|
M:BCL402
|
4.3
|
20.6
|
1.0
|
OBB
|
L:BPH302
|
4.4
|
27.2
|
1.0
|
C3B
|
M:BCL402
|
4.4
|
18.0
|
1.0
|
C2B
|
M:BCL402
|
4.4
|
20.0
|
1.0
|
C2D
|
M:BCL402
|
4.4
|
17.1
|
1.0
|
C20
|
L:BPH302
|
4.5
|
21.7
|
1.0
|
CE2
|
M:TYR210
|
4.6
|
6.8
|
1.0
|
CG
|
L:HIS154
|
4.6
|
21.0
|
1.0
|
ND1
|
L:HIS154
|
4.6
|
23.1
|
1.0
|
CBA
|
M:BCL402
|
4.7
|
21.7
|
1.0
|
CBC
|
M:BCL402
|
4.7
|
18.2
|
1.0
|
CBD
|
M:BCL402
|
4.9
|
14.4
|
1.0
|
CMA
|
M:BCL402
|
5.0
|
18.4
|
1.0
|
|
Magnesium binding site 4 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 4 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg403
b:18.2
occ:1.00
|
MG
|
M:BCL403
|
0.0
|
18.2
|
1.0
|
NC
|
M:BCL403
|
2.0
|
15.1
|
1.0
|
NA
|
M:BCL403
|
2.0
|
20.9
|
1.0
|
ND
|
M:BCL403
|
2.0
|
11.8
|
1.0
|
NB
|
M:BCL403
|
2.0
|
9.9
|
1.0
|
NE2
|
M:HIS202
|
2.2
|
16.4
|
1.0
|
C4D
|
M:BCL403
|
2.9
|
14.3
|
1.0
|
C4A
|
M:BCL403
|
3.0
|
9.3
|
1.0
|
C1A
|
M:BCL403
|
3.0
|
14.6
|
1.0
|
C4C
|
M:BCL403
|
3.0
|
11.0
|
1.0
|
C1C
|
M:BCL403
|
3.0
|
12.0
|
1.0
|
C1B
|
M:BCL403
|
3.1
|
7.4
|
1.0
|
CE1
|
M:HIS202
|
3.1
|
9.2
|
1.0
|
C4B
|
M:BCL403
|
3.1
|
1.5
|
1.0
|
C1D
|
M:BCL403
|
3.2
|
13.5
|
1.0
|
CBB
|
L:BCL301
|
3.2
|
8.2
|
1.0
|
CD2
|
M:HIS202
|
3.3
|
10.9
|
1.0
|
CHB
|
M:BCL403
|
3.4
|
7.7
|
1.0
|
CHC
|
M:BCL403
|
3.4
|
5.1
|
1.0
|
CHA
|
M:BCL403
|
3.4
|
14.2
|
1.0
|
CHD
|
M:BCL403
|
3.5
|
8.9
|
1.0
|
CAB
|
L:BCL301
|
3.6
|
9.5
|
1.0
|
OBB
|
L:BCL301
|
3.9
|
12.3
|
1.0
|
C3D
|
M:BCL403
|
4.2
|
11.2
|
1.0
|
ND1
|
M:HIS202
|
4.2
|
17.6
|
1.0
|
C3A
|
M:BCL403
|
4.3
|
11.5
|
1.0
|
C2A
|
M:BCL403
|
4.3
|
15.9
|
1.0
|
C2C
|
M:BCL403
|
4.3
|
10.7
|
1.0
|
C3C
|
M:BCL403
|
4.3
|
13.1
|
1.0
|
C3B
|
L:BCL301
|
4.3
|
3.5
|
1.0
|
C3B
|
M:BCL403
|
4.4
|
6.5
|
1.0
|
C2B
|
M:BCL403
|
4.4
|
11.6
|
1.0
|
CG
|
M:HIS202
|
4.4
|
11.6
|
1.0
|
C2D
|
M:BCL403
|
4.4
|
12.1
|
1.0
|
CBD
|
M:BCL403
|
4.9
|
10.1
|
1.0
|
CD1
|
M:ILE206
|
4.9
|
5.5
|
1.0
|
|
Magnesium binding site 5 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 5 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg102
b:22.9
occ:1.00
|
MG
|
A:BCL102
|
0.0
|
22.9
|
1.0
|
NA
|
A:BCL102
|
2.0
|
28.6
|
1.0
|
NC
|
A:BCL102
|
2.0
|
34.5
|
1.0
|
ND
|
A:BCL102
|
2.0
|
28.6
|
1.0
|
NB
|
A:BCL102
|
2.0
|
22.2
|
1.0
|
NE2
|
A:HIS29
|
2.5
|
23.1
|
1.0
|
C4D
|
A:BCL102
|
2.9
|
23.7
|
1.0
|
C4A
|
A:BCL102
|
3.0
|
23.2
|
1.0
|
C1A
|
A:BCL102
|
3.0
|
25.1
|
1.0
|
C4C
|
A:BCL102
|
3.0
|
27.2
|
1.0
|
C1C
|
A:BCL102
|
3.0
|
25.1
|
1.0
|
C1B
|
A:BCL102
|
3.0
|
22.8
|
1.0
|
C4B
|
A:BCL102
|
3.1
|
20.2
|
1.0
|
C1D
|
A:BCL102
|
3.2
|
23.6
|
1.0
|
CE1
|
A:HIS29
|
3.3
|
15.7
|
1.0
|
CHB
|
A:BCL102
|
3.3
|
23.0
|
1.0
|
CHA
|
A:BCL102
|
3.4
|
21.5
|
1.0
|
CHC
|
A:BCL102
|
3.4
|
20.8
|
1.0
|
CHD
|
A:BCL102
|
3.5
|
21.8
|
1.0
|
CD2
|
A:HIS29
|
3.6
|
13.1
|
1.0
|
CBB
|
0:BCL102
|
3.9
|
32.0
|
1.0
|
CG2
|
a:ILE8
|
3.9
|
7.4
|
1.0
|
CD1
|
a:ILE8
|
4.2
|
0.9
|
1.0
|
C3D
|
A:BCL102
|
4.2
|
23.9
|
1.0
|
C3C
|
A:BCL102
|
4.3
|
31.1
|
1.0
|
C3A
|
A:BCL102
|
4.3
|
28.7
|
1.0
|
C2A
|
A:BCL102
|
4.3
|
30.3
|
1.0
|
C2C
|
A:BCL102
|
4.3
|
24.8
|
1.0
|
C2B
|
A:BCL102
|
4.4
|
25.6
|
1.0
|
C3B
|
A:BCL102
|
4.4
|
21.9
|
1.0
|
C2D
|
A:BCL102
|
4.4
|
24.2
|
1.0
|
ND1
|
A:HIS29
|
4.5
|
17.6
|
1.0
|
CMB
|
0:BCL102
|
4.5
|
25.1
|
1.0
|
CG
|
A:HIS29
|
4.7
|
21.2
|
1.0
|
CMD
|
B:BCL101
|
4.7
|
31.0
|
1.0
|
CB
|
a:ILE8
|
4.8
|
7.7
|
1.0
|
CBD
|
A:BCL102
|
4.9
|
26.8
|
1.0
|
CAB
|
0:BCL102
|
4.9
|
29.6
|
1.0
|
|
Magnesium binding site 6 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 6 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg101
b:35.0
occ:1.00
|
MG
|
B:BCL101
|
0.0
|
35.0
|
1.0
|
NC
|
B:BCL101
|
2.0
|
38.8
|
1.0
|
NA
|
B:BCL101
|
2.0
|
36.1
|
1.0
|
ND
|
B:BCL101
|
2.0
|
29.2
|
1.0
|
NB
|
B:BCL101
|
2.0
|
34.6
|
1.0
|
NE2
|
B:HIS38
|
2.1
|
21.9
|
1.0
|
C4D
|
B:BCL101
|
3.0
|
29.9
|
1.0
|
C4A
|
B:BCL101
|
3.0
|
31.0
|
1.0
|
C4C
|
B:BCL101
|
3.0
|
29.6
|
1.0
|
C1A
|
B:BCL101
|
3.0
|
34.0
|
1.0
|
CE1
|
B:HIS38
|
3.0
|
26.0
|
1.0
|
C1C
|
B:BCL101
|
3.0
|
33.1
|
1.0
|
C1B
|
B:BCL101
|
3.1
|
31.2
|
1.0
|
C4B
|
B:BCL101
|
3.1
|
31.9
|
1.0
|
CD2
|
B:HIS38
|
3.1
|
23.0
|
1.0
|
C1D
|
B:BCL101
|
3.2
|
33.1
|
1.0
|
CHB
|
B:BCL101
|
3.4
|
31.9
|
1.0
|
CHC
|
B:BCL101
|
3.4
|
29.7
|
1.0
|
CHA
|
B:BCL101
|
3.4
|
29.3
|
1.0
|
CHD
|
B:BCL101
|
3.5
|
24.8
|
1.0
|
CBB
|
D:BCL102
|
3.9
|
24.2
|
1.0
|
ND1
|
B:HIS38
|
4.1
|
28.7
|
1.0
|
C3D
|
B:BCL101
|
4.2
|
26.5
|
1.0
|
CG
|
B:HIS38
|
4.2
|
22.5
|
1.0
|
C2A
|
B:BCL101
|
4.3
|
32.9
|
1.0
|
C3A
|
B:BCL101
|
4.3
|
31.1
|
1.0
|
C3C
|
B:BCL101
|
4.3
|
30.4
|
1.0
|
C2C
|
B:BCL101
|
4.3
|
32.7
|
1.0
|
C3B
|
B:BCL101
|
4.4
|
36.4
|
1.0
|
C2B
|
B:BCL101
|
4.4
|
29.1
|
1.0
|
C2D
|
B:BCL101
|
4.4
|
30.5
|
1.0
|
CMB
|
D:BCL102
|
4.4
|
28.4
|
1.0
|
CAB
|
D:BCL102
|
4.8
|
25.5
|
1.0
|
CMD
|
A:BCL102
|
4.9
|
26.4
|
1.0
|
CBD
|
B:BCL101
|
4.9
|
25.7
|
1.0
|
CD1
|
A:ILE28
|
4.9
|
14.2
|
1.0
|
C2B
|
D:BCL102
|
4.9
|
30.6
|
1.0
|
|
Magnesium binding site 7 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 7 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg102
b:30.6
occ:1.00
|
MG
|
D:BCL102
|
0.0
|
30.6
|
1.0
|
NA
|
D:BCL102
|
2.0
|
30.6
|
1.0
|
NC
|
D:BCL102
|
2.0
|
33.0
|
1.0
|
ND
|
D:BCL102
|
2.0
|
31.0
|
1.0
|
NB
|
D:BCL102
|
2.0
|
27.3
|
1.0
|
NE2
|
D:HIS29
|
2.5
|
15.8
|
1.0
|
C4D
|
D:BCL102
|
2.9
|
23.4
|
1.0
|
C4A
|
D:BCL102
|
3.0
|
31.0
|
1.0
|
C1A
|
D:BCL102
|
3.0
|
27.2
|
1.0
|
C4C
|
D:BCL102
|
3.0
|
22.1
|
1.0
|
C1C
|
D:BCL102
|
3.0
|
26.8
|
1.0
|
C1B
|
D:BCL102
|
3.0
|
27.9
|
1.0
|
C4B
|
D:BCL102
|
3.1
|
23.9
|
1.0
|
C1D
|
D:BCL102
|
3.2
|
28.8
|
1.0
|
CE1
|
D:HIS29
|
3.3
|
18.0
|
1.0
|
CHB
|
D:BCL102
|
3.3
|
28.0
|
1.0
|
CHA
|
D:BCL102
|
3.4
|
25.9
|
1.0
|
CHC
|
D:BCL102
|
3.4
|
24.6
|
1.0
|
CHD
|
D:BCL102
|
3.5
|
26.2
|
1.0
|
CD2
|
D:HIS29
|
3.7
|
13.3
|
1.0
|
CG2
|
b:ILE8
|
3.8
|
10.5
|
1.0
|
CBB
|
B:BCL101
|
3.9
|
38.5
|
1.0
|
C3D
|
D:BCL102
|
4.2
|
29.9
|
1.0
|
C3A
|
D:BCL102
|
4.3
|
31.1
|
1.0
|
C3C
|
D:BCL102
|
4.3
|
33.1
|
1.0
|
C2A
|
D:BCL102
|
4.3
|
29.2
|
1.0
|
C2C
|
D:BCL102
|
4.3
|
24.8
|
1.0
|
C2B
|
D:BCL102
|
4.4
|
30.6
|
1.0
|
C3B
|
D:BCL102
|
4.4
|
29.3
|
1.0
|
CMB
|
B:BCL101
|
4.4
|
30.6
|
1.0
|
C2D
|
D:BCL102
|
4.4
|
30.3
|
1.0
|
CD1
|
b:ILE8
|
4.5
|
11.7
|
1.0
|
ND1
|
D:HIS29
|
4.5
|
8.0
|
1.0
|
CMD
|
E:BCL102
|
4.7
|
31.1
|
1.0
|
CG
|
D:HIS29
|
4.7
|
16.9
|
1.0
|
CB
|
b:ILE8
|
4.8
|
4.3
|
1.0
|
CAB
|
B:BCL101
|
4.8
|
33.2
|
1.0
|
CBD
|
D:BCL102
|
4.9
|
29.3
|
1.0
|
C2B
|
B:BCL101
|
4.9
|
29.1
|
1.0
|
|
Magnesium binding site 8 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 8 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg102
b:31.4
occ:1.00
|
MG
|
E:BCL102
|
0.0
|
31.4
|
1.0
|
NC
|
E:BCL102
|
2.0
|
31.9
|
1.0
|
NA
|
E:BCL102
|
2.0
|
35.3
|
1.0
|
ND
|
E:BCL102
|
2.0
|
29.4
|
1.0
|
NB
|
E:BCL102
|
2.0
|
33.9
|
1.0
|
NE2
|
E:HIS38
|
2.1
|
28.1
|
1.0
|
C4D
|
E:BCL102
|
3.0
|
26.8
|
1.0
|
C1A
|
E:BCL102
|
3.0
|
31.4
|
1.0
|
C4C
|
E:BCL102
|
3.0
|
28.9
|
1.0
|
C4A
|
E:BCL102
|
3.0
|
31.7
|
1.0
|
C1C
|
E:BCL102
|
3.0
|
29.4
|
1.0
|
C1B
|
E:BCL102
|
3.1
|
32.4
|
1.0
|
C4B
|
E:BCL102
|
3.1
|
31.2
|
1.0
|
CE1
|
E:HIS38
|
3.1
|
27.1
|
1.0
|
CD2
|
E:HIS38
|
3.1
|
25.5
|
1.0
|
C1D
|
E:BCL102
|
3.2
|
30.0
|
1.0
|
CHB
|
E:BCL102
|
3.4
|
31.0
|
1.0
|
CHC
|
E:BCL102
|
3.4
|
27.6
|
1.0
|
CHA
|
E:BCL102
|
3.4
|
28.1
|
1.0
|
CHD
|
E:BCL102
|
3.5
|
26.4
|
1.0
|
C3D
|
E:BCL102
|
4.2
|
28.4
|
1.0
|
ND1
|
E:HIS38
|
4.2
|
27.9
|
1.0
|
CMB
|
F:BCL101
|
4.2
|
26.2
|
1.0
|
CBB
|
F:BCL101
|
4.2
|
25.7
|
1.0
|
CG
|
E:HIS38
|
4.2
|
24.6
|
1.0
|
C2A
|
E:BCL102
|
4.3
|
32.2
|
1.0
|
C3A
|
E:BCL102
|
4.3
|
32.2
|
1.0
|
C3C
|
E:BCL102
|
4.3
|
31.3
|
1.0
|
C2C
|
E:BCL102
|
4.3
|
34.4
|
1.0
|
C3B
|
E:BCL102
|
4.4
|
34.6
|
1.0
|
C2B
|
E:BCL102
|
4.4
|
29.8
|
1.0
|
C2D
|
E:BCL102
|
4.4
|
28.6
|
1.0
|
CMD
|
D:BCL102
|
4.7
|
28.9
|
1.0
|
CAB
|
F:BCL101
|
4.8
|
25.6
|
1.0
|
C2B
|
F:BCL101
|
4.8
|
21.9
|
1.0
|
CBD
|
E:BCL102
|
4.9
|
29.1
|
1.0
|
CD1
|
D:ILE28
|
4.9
|
8.4
|
1.0
|
|
Magnesium binding site 9 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 9 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg101
b:26.9
occ:1.00
|
MG
|
F:BCL101
|
0.0
|
26.9
|
1.0
|
NA
|
F:BCL101
|
2.0
|
26.5
|
1.0
|
NC
|
F:BCL101
|
2.0
|
31.6
|
1.0
|
ND
|
F:BCL101
|
2.0
|
26.7
|
1.0
|
NB
|
F:BCL101
|
2.1
|
29.5
|
1.0
|
NE2
|
F:HIS29
|
2.4
|
26.9
|
1.0
|
C4D
|
F:BCL101
|
2.9
|
24.2
|
1.0
|
C4A
|
F:BCL101
|
3.0
|
22.9
|
1.0
|
C1A
|
F:BCL101
|
3.0
|
30.2
|
1.0
|
C4C
|
F:BCL101
|
3.0
|
24.9
|
1.0
|
C1C
|
F:BCL101
|
3.0
|
27.2
|
1.0
|
C1B
|
F:BCL101
|
3.0
|
27.3
|
1.0
|
C4B
|
F:BCL101
|
3.1
|
23.5
|
1.0
|
CE1
|
F:HIS29
|
3.2
|
26.5
|
1.0
|
C1D
|
F:BCL101
|
3.2
|
24.9
|
1.0
|
CHB
|
F:BCL101
|
3.3
|
27.2
|
1.0
|
CHA
|
F:BCL101
|
3.4
|
26.0
|
1.0
|
CHC
|
F:BCL101
|
3.4
|
17.8
|
1.0
|
CD2
|
F:HIS29
|
3.5
|
15.8
|
1.0
|
CHD
|
F:BCL101
|
3.5
|
24.8
|
1.0
|
CG2
|
c:ILE8
|
3.9
|
9.6
|
1.0
|
CBB
|
E:BCL102
|
4.1
|
34.4
|
1.0
|
C3D
|
F:BCL101
|
4.2
|
26.0
|
1.0
|
C3A
|
F:BCL101
|
4.3
|
29.4
|
1.0
|
C3C
|
F:BCL101
|
4.3
|
35.0
|
1.0
|
C2A
|
F:BCL101
|
4.3
|
33.0
|
1.0
|
C2C
|
F:BCL101
|
4.3
|
23.1
|
1.0
|
ND1
|
F:HIS29
|
4.4
|
18.2
|
1.0
|
C2B
|
F:BCL101
|
4.4
|
21.9
|
1.0
|
C3B
|
F:BCL101
|
4.4
|
28.8
|
1.0
|
C2D
|
F:BCL101
|
4.4
|
26.7
|
1.0
|
CD1
|
c:ILE8
|
4.5
|
8.2
|
1.0
|
CMB
|
E:BCL102
|
4.5
|
30.5
|
1.0
|
CG
|
F:HIS29
|
4.6
|
17.8
|
1.0
|
CMD
|
G:BCL101
|
4.6
|
29.5
|
1.0
|
CBD
|
F:BCL101
|
4.9
|
23.9
|
1.0
|
CB
|
c:ILE8
|
4.9
|
11.8
|
1.0
|
|
Magnesium binding site 10 out
of 36 in 7xxf
Go back to
Magnesium Binding Sites List in 7xxf
Magnesium binding site 10 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodopila Globiformis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg101
b:34.0
occ:1.00
|
MG
|
G:BCL101
|
0.0
|
34.0
|
1.0
|
NC
|
G:BCL101
|
2.0
|
35.2
|
1.0
|
NA
|
G:BCL101
|
2.0
|
35.5
|
1.0
|
ND
|
G:BCL101
|
2.0
|
29.8
|
1.0
|
NB
|
G:BCL101
|
2.0
|
30.9
|
1.0
|
NE2
|
G:HIS38
|
2.1
|
18.3
|
1.0
|
C4D
|
G:BCL101
|
3.0
|
27.8
|
1.0
|
C1A
|
G:BCL101
|
3.0
|
34.7
|
1.0
|
C4C
|
G:BCL101
|
3.0
|
31.3
|
1.0
|
C4A
|
G:BCL101
|
3.0
|
31.2
|
1.0
|
C1C
|
G:BCL101
|
3.0
|
32.6
|
1.0
|
CD2
|
G:HIS38
|
3.1
|
17.0
|
1.0
|
C1B
|
G:BCL101
|
3.1
|
29.7
|
1.0
|
CE1
|
G:HIS38
|
3.1
|
22.0
|
1.0
|
C4B
|
G:BCL101
|
3.1
|
31.4
|
1.0
|
C1D
|
G:BCL101
|
3.2
|
29.7
|
1.0
|
CHB
|
G:BCL101
|
3.4
|
29.1
|
1.0
|
CHC
|
G:BCL101
|
3.4
|
27.5
|
1.0
|
CHA
|
G:BCL101
|
3.4
|
29.9
|
1.0
|
CHD
|
G:BCL101
|
3.5
|
28.6
|
1.0
|
CBB
|
I:BCL102
|
3.9
|
21.8
|
1.0
|
CMB
|
I:BCL102
|
4.1
|
24.4
|
1.0
|
ND1
|
G:HIS38
|
4.2
|
23.6
|
1.0
|
C3D
|
G:BCL101
|
4.2
|
29.4
|
1.0
|
CG
|
G:HIS38
|
4.2
|
16.5
|
1.0
|
C2A
|
G:BCL101
|
4.3
|
37.5
|
1.0
|
C3C
|
G:BCL101
|
4.3
|
28.2
|
1.0
|
C2C
|
G:BCL101
|
4.3
|
32.6
|
1.0
|
C3A
|
G:BCL101
|
4.3
|
35.0
|
1.0
|
C3B
|
G:BCL101
|
4.4
|
32.9
|
1.0
|
C2B
|
G:BCL101
|
4.4
|
32.6
|
1.0
|
C2D
|
G:BCL101
|
4.4
|
30.7
|
1.0
|
CMD
|
F:BCL101
|
4.6
|
27.9
|
1.0
|
CAB
|
I:BCL102
|
4.7
|
25.0
|
1.0
|
C2B
|
I:BCL102
|
4.8
|
24.2
|
1.0
|
CD1
|
d:LEU9
|
4.8
|
7.0
|
1.0
|
CBD
|
G:BCL101
|
4.9
|
26.9
|
1.0
|
|
Reference:
K.Tani,
R.Kanno,
K.Kurosawa,
S.Takaichi,
K.V.P.Nagashima,
M.Hall,
L.J.Yu,
Y.Kimura,
M.T.Madigan,
A.Mizoguchi,
B.M.Humbel,
Z.Y.Wang-Otomo.
An LH1-Rc Photocomplex From An Extremophilic Phototroph Provides Insight Into Origins of Two Photosynthesis Proteins. Commun Biol V. 5 1197 2022.
ISSN: ESSN 2399-3642
PubMed: 36344631
DOI: 10.1038/S42003-022-04174-2
Page generated: Thu Oct 3 13:24:47 2024
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