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Magnesium in PDB 7xy9: Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions

Enzymatic activity of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions

All present enzymatic activity of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions:
1.1.1.80;

Other elements in 7xy9:

The structure of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions (pdb code 7xy9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions, PDB code: 7xy9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 7xy9

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Magnesium binding site 1 out of 8 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:37.0
occ:1.00
 OE1 C:GLN96 2.9 23.0 1.0
N A:ARG301 3.2 15.6 1.0
O A:GLY297 3.2 25.0 1.0
N A:LEU300 3.3 12.1 1.0
C A:GLY298 3.3 11.2 1.0
CA A:GLY298 3.4 12.8 1.0
CB A:LEU300 3.6 14.2 1.0
N A:ARG299 3.7 19.4 1.0
O A:GLY298 3.7 22.3 1.0
CA A:LEU300 3.8 15.5 1.0
CD C:GLN96 3.8 17.8 1.0
C A:GLY297 3.8 22.3 1.0
CB A:ARG301 3.9 18.2 1.0
N A:GLY298 3.9 29.4 1.0
C A:LEU300 3.9 13.1 1.0
CA A:ARG301 4.1 14.2 1.0
C A:ARG299 4.2 8.4 1.0
O C:HOH676 4.3 31.3 1.0
CA A:ARG299 4.5 11.9 1.0
CB C:GLN96 4.5 17.7 1.0
CG C:GLN96 4.5 16.1 1.0
CZ2 A:TRP90 4.6 14.9 1.0
NE2 C:GLN96 4.6 15.5 1.0
CG A:LEU300 4.7 23.6 1.0
CH2 A:TRP90 4.7 21.0 1.0

Magnesium binding site 2 out of 8 in 7xy9

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Magnesium binding site 2 out of 8 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:8.0
occ:1.00
 NE2 A:HIS157 2.0 23.0 1.0
NE2 A:HIS102 2.2 20.1 1.0
SG A:CYS295 2.3 39.5 1.0
ND1 A:HIS100 2.4 23.5 1.0
CB A:CYS295 2.6 20.0 1.0
CE1 A:HIS157 3.0 13.1 1.0
CD2 A:HIS157 3.0 10.0 1.0
CD2 A:HIS102 3.2 8.9 1.0
CE1 A:HIS102 3.2 16.1 1.0
CG A:HIS100 3.3 16.6 1.0
CB A:HIS100 3.4 15.2 1.0
CE1 A:HIS100 3.5 16.9 1.0
CA A:CYS295 4.0 23.0 1.0
ND1 A:HIS157 4.1 15.2 1.0
CG A:HIS157 4.1 10.3 1.0
ND1 A:HIS102 4.3 24.3 1.0
CG A:HIS102 4.3 18.2 1.0
CE2 A:TYR99 4.4 16.2 1.0
CD2 A:TYR99 4.5 17.9 1.0
CD2 A:HIS100 4.5 17.6 1.0
N A:CYS295 4.5 35.4 1.0
N A:PRO296 4.5 33.1 1.0
NE2 A:HIS100 4.6 22.5 1.0
CD1 A:LEU161 4.6 18.8 1.0
C A:CYS295 4.7 34.5 1.0
CD A:PRO296 4.7 25.9 1.0
O A:TYR99 4.7 19.8 1.0
CD2 A:LEU161 4.8 15.3 1.0
CA A:HIS100 4.9 16.8 1.0

Magnesium binding site 3 out of 8 in 7xy9

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Magnesium binding site 3 out of 8 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:23.0
occ:1.00
 OE1 D:GLN96 3.1 21.0 1.0
O B:GLY297 3.1 22.7 1.0
N B:ARG301 3.2 13.9 1.0
N B:LEU300 3.3 10.7 1.0
C B:GLY298 3.4 12.2 1.0
CA B:GLY298 3.4 14.8 1.0
CB B:LEU300 3.6 13.1 1.0
N B:ARG299 3.7 19.3 1.0
O B:GLY298 3.7 22.1 1.0
CA B:LEU300 3.8 15.1 1.0
C B:GLY297 3.8 22.3 1.0
CB B:ARG301 3.9 20.2 1.0
CD D:GLN96 3.9 16.8 1.0
N B:GLY298 3.9 28.5 1.0
C B:LEU300 4.0 11.5 1.0
CA B:ARG301 4.1 15.8 1.0
C B:ARG299 4.2 8.7 1.0
O D:HOH643 4.3 27.3 1.0
CB D:GLN96 4.5 17.9 1.0
CA B:ARG299 4.5 14.9 1.0
CZ2 B:TRP90 4.6 16.2 1.0
CG B:LEU300 4.6 21.0 1.0
CG D:GLN96 4.7 18.7 1.0
CH2 B:TRP90 4.7 20.8 1.0
NE2 D:GLN96 4.7 19.2 1.0
CD2 B:LEU300 4.9 18.3 1.0

Magnesium binding site 4 out of 8 in 7xy9

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Magnesium binding site 4 out of 8 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:7.7
occ:1.00
 NE2 B:HIS157 2.0 19.7 1.0
NE2 B:HIS102 2.2 19.8 1.0
SG B:CYS295 2.4 35.5 1.0
ND1 B:HIS100 2.4 21.1 1.0
CB B:CYS295 2.6 21.0 1.0
CE1 B:HIS157 3.0 11.1 1.0
CD2 B:HIS157 3.1 8.3 1.0
CD2 B:HIS102 3.2 9.9 1.0
CE1 B:HIS102 3.2 16.4 1.0
CG B:HIS100 3.3 16.1 1.0
CB B:HIS100 3.4 13.2 1.0
CE1 B:HIS100 3.5 16.6 1.0
ND1 B:HIS157 4.1 15.2 1.0
CA B:CYS295 4.1 22.6 1.0
CG B:HIS157 4.1 8.8 1.0
ND1 B:HIS102 4.3 23.7 1.0
CG B:HIS102 4.3 18.8 1.0
CE2 B:TYR99 4.4 16.4 1.0
CD2 B:TYR99 4.5 16.8 1.0
CD2 B:HIS100 4.5 17.9 1.0
NE2 B:HIS100 4.6 22.8 1.0
N B:PRO296 4.6 30.8 1.0
CD1 B:LEU161 4.6 17.6 1.0
N B:CYS295 4.6 32.2 1.0
CD B:PRO296 4.7 25.3 1.0
C B:CYS295 4.7 31.5 1.0
O B:TYR99 4.7 20.2 1.0
CD2 B:LEU161 4.8 12.5 1.0
CA B:HIS100 4.8 16.1 1.0

Magnesium binding site 5 out of 8 in 7xy9

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Magnesium binding site 5 out of 8 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg501

b:31.1
occ:1.00
 OE1 A:GLN96 3.1 21.2 1.0
O C:GLY297 3.2 25.6 1.0
N C:ARG301 3.2 13.9 1.0
N C:LEU300 3.3 13.0 1.0
C C:GLY298 3.3 11.3 1.0
CA C:GLY298 3.4 16.4 1.0
CB C:LEU300 3.6 15.1 1.0
N C:ARG299 3.7 16.0 1.0
O C:GLY298 3.7 25.1 1.0
CA C:LEU300 3.8 17.8 1.0
C C:GLY297 3.8 20.7 1.0
CB C:ARG301 3.9 18.3 1.0
CD A:GLN96 3.9 17.7 1.0
N C:GLY298 3.9 27.8 1.0
C C:LEU300 4.0 12.6 1.0
CA C:ARG301 4.1 13.4 1.0
C C:ARG299 4.2 10.6 1.0
O A:HOH539 4.3 32.0 1.0
CB A:GLN96 4.5 20.8 1.0
CA C:ARG299 4.6 17.1 1.0
CG A:GLN96 4.6 19.2 1.0
CZ2 C:TRP90 4.6 16.0 1.0
CG C:LEU300 4.7 21.9 1.0
CH2 C:TRP90 4.7 17.9 1.0
NE2 A:GLN96 4.8 20.2 1.0
CD2 C:LEU300 5.0 17.6 1.0

Magnesium binding site 6 out of 8 in 7xy9

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Magnesium binding site 6 out of 8 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:8.9
occ:1.00
 NE2 C:HIS157 2.0 23.4 1.0
NE2 C:HIS102 2.2 15.1 1.0
SG C:CYS295 2.3 36.7 1.0
ND1 C:HIS100 2.4 19.7 1.0
CB C:CYS295 2.7 22.2 1.0
CE1 C:HIS157 3.0 12.3 1.0
CD2 C:HIS157 3.0 11.8 1.0
CD2 C:HIS102 3.2 9.7 1.0
CE1 C:HIS102 3.2 17.8 1.0
CG C:HIS100 3.3 20.2 1.0
CB C:HIS100 3.4 14.4 1.0
CE1 C:HIS100 3.4 16.6 1.0
ND1 C:HIS157 4.1 17.3 1.0
CA C:CYS295 4.1 24.9 1.0
CG C:HIS157 4.1 9.6 1.0
ND1 C:HIS102 4.3 23.0 1.0
CG C:HIS102 4.3 18.0 1.0
CE2 C:TYR99 4.4 16.0 1.0
CD2 C:TYR99 4.5 15.9 1.0
CD2 C:HIS100 4.5 20.1 1.0
CD C:PRO296 4.5 28.5 1.0
NE2 C:HIS100 4.5 20.6 1.0
N C:PRO296 4.5 35.6 1.0
N C:CYS295 4.6 31.6 1.0
CD1 C:LEU161 4.6 19.9 1.0
O C:TYR99 4.7 18.5 1.0
C C:CYS295 4.7 32.4 1.0
CD2 C:LEU161 4.8 16.9 1.0
CA C:HIS100 4.9 16.7 1.0

Magnesium binding site 7 out of 8 in 7xy9

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Magnesium binding site 7 out of 8 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg501

b:34.0
occ:1.00
 OE1 B:GLN96 3.1 20.3 1.0
O D:GLY297 3.1 25.5 1.0
N D:ARG301 3.2 12.0 1.0
N D:LEU300 3.3 13.5 1.0
C D:GLY298 3.3 10.8 1.0
CA D:GLY298 3.4 16.2 1.0
CB D:LEU300 3.6 17.3 1.0
N D:ARG299 3.7 16.9 1.0
O D:GLY298 3.7 24.6 1.0
CA D:LEU300 3.8 17.5 1.0
C D:GLY297 3.8 21.1 1.0
CB D:ARG301 3.9 19.1 1.0
CD B:GLN96 3.9 17.4 1.0
N D:GLY298 3.9 27.8 1.0
C D:LEU300 4.0 12.6 1.0
CA D:ARG301 4.1 16.2 1.0
C D:ARG299 4.2 10.7 1.0
O B:HOH632 4.3 27.3 1.0
CB B:GLN96 4.5 20.8 1.0
CA D:ARG299 4.5 16.6 1.0
CZ2 D:TRP90 4.6 16.3 1.0
CH2 D:TRP90 4.6 18.7 1.0
CG B:GLN96 4.6 18.8 1.0
CG D:LEU300 4.7 21.2 1.0
NE2 B:GLN96 4.7 17.4 1.0
CD2 D:LEU300 5.0 18.6 1.0

Magnesium binding site 8 out of 8 in 7xy9

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Magnesium binding site 8 out of 8 in the Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:7.3
occ:1.00
 NE2 D:HIS157 2.0 21.4 1.0
NE2 D:HIS102 2.2 16.6 1.0
SG D:CYS295 2.3 37.6 1.0
ND1 D:HIS100 2.4 21.2 1.0
CB D:CYS295 2.7 20.6 1.0
CE1 D:HIS157 3.0 13.0 1.0
CD2 D:HIS157 3.0 11.6 1.0
CD2 D:HIS102 3.2 7.4 1.0
CE1 D:HIS102 3.2 18.6 1.0
CG D:HIS100 3.3 18.7 1.0
CB D:HIS100 3.4 14.8 1.0
CE1 D:HIS100 3.5 17.8 1.0
ND1 D:HIS157 4.1 17.0 1.0
CA D:CYS295 4.1 23.7 1.0
CG D:HIS157 4.1 9.6 1.0
ND1 D:HIS102 4.3 23.4 1.0
CG D:HIS102 4.3 19.6 1.0
CE2 D:TYR99 4.4 15.4 1.0
CD2 D:TYR99 4.5 15.5 1.0
CD2 D:HIS100 4.5 19.8 1.0
N D:PRO296 4.5 35.6 1.0
CD D:PRO296 4.5 29.1 1.0
NE2 D:HIS100 4.6 23.1 1.0
N D:CYS295 4.6 31.1 1.0
CD1 D:LEU161 4.6 20.8 1.0
C D:CYS295 4.7 32.6 1.0
O D:TYR99 4.7 18.5 1.0
CD2 D:LEU161 4.8 16.2 1.0
CA D:HIS100 4.9 18.7 1.0

Reference:

Q.Chen, X.Li, F.Yang, G.Qu, Z.T.Sun, Y.J.Wang. Cryo-Em Structure of Secondary Alcohol Dehydrogenases Tbsadh After Carrier-Free Immobilization Based on Weak Intermolecular Interactions To Be Published.
Page generated: Thu Oct 3 13:24:46 2024

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