Magnesium in PDB 7y8a: Cryo-Em Structure of Cryptophyte Photosystem I
Enzymatic activity of Cryo-Em Structure of Cryptophyte Photosystem I
All present enzymatic activity of Cryo-Em Structure of Cryptophyte Photosystem I:
1.97.1.12;
Other elements in 7y8a:
The structure of Cryo-Em Structure of Cryptophyte Photosystem I also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
220;
Page 23, Binding sites: 221 -
230;
Page 24, Binding sites: 231 -
236;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Cryptophyte Photosystem I
(pdb code 7y8a). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 236 binding sites of Magnesium where determined in the
Cryo-Em Structure of Cryptophyte Photosystem I, PDB code: 7y8a:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 1 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg601
b:107.8
occ:1.00
|
MG
|
1:CLA601
|
0.0
|
107.8
|
1.0
|
NA
|
1:CLA601
|
1.9
|
102.0
|
1.0
|
ND
|
1:CLA601
|
1.9
|
104.2
|
1.0
|
NB
|
1:CLA601
|
2.0
|
105.2
|
1.0
|
NC
|
1:CLA601
|
2.0
|
98.8
|
1.0
|
O
|
1:ALA52
|
2.7
|
103.2
|
1.0
|
C4D
|
1:CLA601
|
2.9
|
100.4
|
1.0
|
C4A
|
1:CLA601
|
2.9
|
99.5
|
1.0
|
C1C
|
1:CLA601
|
3.0
|
102.0
|
1.0
|
C1A
|
1:CLA601
|
3.0
|
102.7
|
1.0
|
C1B
|
1:CLA601
|
3.0
|
101.7
|
1.0
|
C4B
|
1:CLA601
|
3.1
|
104.5
|
1.0
|
C4C
|
1:CLA601
|
3.1
|
96.8
|
1.0
|
C1D
|
1:CLA601
|
3.2
|
101.4
|
1.0
|
CHB
|
1:CLA601
|
3.3
|
98.5
|
1.0
|
CHA
|
1:CLA601
|
3.4
|
101.4
|
1.0
|
CHC
|
1:CLA601
|
3.4
|
102.9
|
1.0
|
CHD
|
1:CLA601
|
3.6
|
98.6
|
1.0
|
C
|
1:ALA52
|
3.9
|
102.6
|
1.0
|
O2A
|
1:CLA601
|
4.0
|
102.0
|
1.0
|
C3D
|
1:CLA601
|
4.2
|
99.0
|
1.0
|
C3B
|
1:CLA601
|
4.2
|
104.8
|
1.0
|
C2B
|
1:CLA601
|
4.2
|
102.7
|
1.0
|
C2C
|
1:CLA601
|
4.3
|
103.5
|
1.0
|
C3A
|
1:CLA601
|
4.3
|
101.0
|
1.0
|
C2A
|
1:CLA601
|
4.3
|
101.3
|
1.0
|
C2D
|
1:CLA601
|
4.3
|
99.5
|
1.0
|
C3C
|
1:CLA601
|
4.3
|
100.5
|
1.0
|
CA
|
1:ALA52
|
4.7
|
99.7
|
1.0
|
CAA
|
1:CLA601
|
4.8
|
101.3
|
1.0
|
N
|
1:ILE53
|
4.8
|
99.6
|
1.0
|
CA
|
1:ILE53
|
4.9
|
100.8
|
1.0
|
CGA
|
1:CLA601
|
4.9
|
103.8
|
1.0
|
CBD
|
1:CLA601
|
4.9
|
101.8
|
1.0
|
CD
|
1:PRO54
|
4.9
|
105.1
|
1.0
|
CG1
|
1:ILE53
|
5.0
|
101.2
|
1.0
|
|
Magnesium binding site 2 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 2 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg602
b:83.6
occ:1.00
|
MG
|
1:CLA602
|
0.0
|
83.6
|
1.0
|
NA
|
1:CLA602
|
1.9
|
77.3
|
1.0
|
ND
|
1:CLA602
|
1.9
|
72.4
|
1.0
|
NB
|
1:CLA602
|
2.0
|
70.6
|
1.0
|
NC
|
1:CLA602
|
2.0
|
72.7
|
1.0
|
OE2
|
1:GLU92
|
2.8
|
69.8
|
1.0
|
C4D
|
1:CLA602
|
2.9
|
63.3
|
1.0
|
C4A
|
1:CLA602
|
2.9
|
74.2
|
1.0
|
C1C
|
1:CLA602
|
3.0
|
70.0
|
1.0
|
C1B
|
1:CLA602
|
3.0
|
70.1
|
1.0
|
C1A
|
1:CLA602
|
3.0
|
71.9
|
1.0
|
C4B
|
1:CLA602
|
3.1
|
70.1
|
1.0
|
C4C
|
1:CLA602
|
3.1
|
72.9
|
1.0
|
C15
|
1:II3615
|
3.2
|
79.7
|
1.0
|
C1D
|
1:CLA602
|
3.2
|
74.4
|
1.0
|
CHB
|
1:CLA602
|
3.3
|
74.1
|
1.0
|
CHA
|
1:CLA602
|
3.4
|
64.2
|
1.0
|
CHC
|
1:CLA602
|
3.4
|
72.3
|
1.0
|
CHD
|
1:CLA602
|
3.6
|
77.3
|
1.0
|
CD
|
1:GLU92
|
3.7
|
72.0
|
1.0
|
C3D
|
1:CLA602
|
4.2
|
67.0
|
1.0
|
O2A
|
1:CLA602
|
4.2
|
74.5
|
1.0
|
C2B
|
1:CLA602
|
4.2
|
73.0
|
1.0
|
C3B
|
1:CLA602
|
4.2
|
69.3
|
1.0
|
C2D
|
1:CLA602
|
4.3
|
69.4
|
1.0
|
C2C
|
1:CLA602
|
4.3
|
70.3
|
1.0
|
C3A
|
1:CLA602
|
4.3
|
69.4
|
1.0
|
C3C
|
1:CLA602
|
4.3
|
67.4
|
1.0
|
C07
|
1:II3615
|
4.3
|
75.5
|
1.0
|
C2A
|
1:CLA602
|
4.3
|
71.2
|
1.0
|
OE1
|
1:GLU92
|
4.5
|
77.0
|
1.0
|
CG
|
1:GLU92
|
4.5
|
63.5
|
1.0
|
NH2
|
1:ARG197
|
4.6
|
71.2
|
1.0
|
NE
|
1:ARG197
|
4.7
|
72.8
|
1.0
|
C2
|
1:CLA602
|
4.7
|
74.1
|
1.0
|
CBA
|
1:CLA602
|
4.8
|
75.6
|
1.0
|
C10
|
1:II3615
|
4.9
|
78.5
|
1.0
|
CBD
|
1:CLA602
|
4.9
|
67.6
|
1.0
|
C1
|
1:CLA602
|
5.0
|
73.7
|
1.0
|
CZ
|
1:ARG197
|
5.0
|
70.5
|
1.0
|
|
Magnesium binding site 3 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 3 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg603
b:77.5
occ:1.00
|
MG
|
1:CLA603
|
0.0
|
77.5
|
1.0
|
NA
|
1:CLA603
|
1.9
|
73.2
|
1.0
|
ND
|
1:CLA603
|
1.9
|
73.0
|
1.0
|
NB
|
1:CLA603
|
2.0
|
75.0
|
1.0
|
NC
|
1:CLA603
|
2.0
|
72.2
|
1.0
|
NE2
|
1:HIS95
|
2.5
|
65.9
|
1.0
|
C4D
|
1:CLA603
|
2.9
|
67.1
|
1.0
|
C4A
|
1:CLA603
|
2.9
|
73.8
|
1.0
|
C1C
|
1:CLA603
|
3.0
|
71.3
|
1.0
|
C1B
|
1:CLA603
|
3.0
|
72.7
|
1.0
|
C1A
|
1:CLA603
|
3.0
|
68.9
|
1.0
|
C4B
|
1:CLA603
|
3.1
|
72.4
|
1.0
|
C4C
|
1:CLA603
|
3.1
|
71.6
|
1.0
|
C1D
|
1:CLA603
|
3.2
|
76.1
|
1.0
|
CHB
|
1:CLA603
|
3.3
|
72.9
|
1.0
|
CD2
|
1:HIS95
|
3.4
|
64.8
|
1.0
|
CHA
|
1:CLA603
|
3.4
|
66.3
|
1.0
|
CHC
|
1:CLA603
|
3.4
|
72.5
|
1.0
|
CE1
|
1:HIS95
|
3.5
|
70.9
|
1.0
|
CHD
|
1:CLA603
|
3.6
|
75.9
|
1.0
|
C3D
|
1:CLA603
|
4.2
|
71.1
|
1.0
|
C2B
|
1:CLA603
|
4.2
|
68.8
|
1.0
|
C3B
|
1:CLA603
|
4.2
|
68.9
|
1.0
|
C2C
|
1:CLA603
|
4.3
|
72.9
|
1.0
|
C2D
|
1:CLA603
|
4.3
|
74.6
|
1.0
|
C3A
|
1:CLA603
|
4.3
|
69.4
|
1.0
|
C3C
|
1:CLA603
|
4.3
|
70.3
|
1.0
|
C2A
|
1:CLA603
|
4.3
|
70.9
|
1.0
|
CG
|
1:HIS95
|
4.6
|
61.2
|
1.0
|
ND1
|
1:HIS95
|
4.6
|
67.7
|
1.0
|
CBD
|
1:CLA603
|
4.9
|
72.0
|
1.0
|
CBB
|
1:CLA602
|
5.0
|
74.5
|
1.0
|
|
Magnesium binding site 4 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 4 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg604
b:105.2
occ:1.00
|
MG
|
1:CLA604
|
0.0
|
105.2
|
1.0
|
NA
|
1:CLA604
|
1.9
|
102.8
|
1.0
|
NB
|
1:CLA604
|
1.9
|
100.4
|
1.0
|
ND
|
1:CLA604
|
1.9
|
98.7
|
1.0
|
NC
|
1:CLA604
|
2.0
|
102.2
|
1.0
|
C4D
|
1:CLA604
|
2.9
|
95.5
|
1.0
|
C4A
|
1:CLA604
|
2.9
|
102.0
|
1.0
|
OE1
|
1:GLN109
|
3.0
|
97.1
|
1.0
|
C1C
|
1:CLA604
|
3.0
|
99.6
|
1.0
|
C1B
|
1:CLA604
|
3.0
|
98.9
|
1.0
|
C1A
|
1:CLA604
|
3.0
|
101.2
|
1.0
|
C4B
|
1:CLA604
|
3.1
|
99.1
|
1.0
|
C4C
|
1:CLA604
|
3.1
|
100.1
|
1.0
|
C1D
|
1:CLA604
|
3.2
|
98.8
|
1.0
|
CHB
|
1:CLA604
|
3.3
|
101.7
|
1.0
|
CHC
|
1:CLA604
|
3.4
|
100.3
|
1.0
|
CHA
|
1:CLA604
|
3.4
|
97.2
|
1.0
|
CHD
|
1:CLA604
|
3.6
|
100.2
|
1.0
|
CD
|
1:GLN109
|
3.8
|
98.6
|
1.0
|
CG
|
1:GLN109
|
4.2
|
99.2
|
1.0
|
C3D
|
1:CLA604
|
4.2
|
99.8
|
1.0
|
O2A
|
1:CLA604
|
4.2
|
104.7
|
1.0
|
C2B
|
1:CLA604
|
4.2
|
97.0
|
1.0
|
C3B
|
1:CLA604
|
4.2
|
97.4
|
1.0
|
CGA
|
1:CLA604
|
4.2
|
107.7
|
1.0
|
C2C
|
1:CLA604
|
4.3
|
99.3
|
1.0
|
C2D
|
1:CLA604
|
4.3
|
98.8
|
1.0
|
C3A
|
1:CLA604
|
4.3
|
97.8
|
1.0
|
C2A
|
1:CLA604
|
4.3
|
98.9
|
1.0
|
C3C
|
1:CLA604
|
4.3
|
97.5
|
1.0
|
CBA
|
1:CLA604
|
4.5
|
104.0
|
1.0
|
O1A
|
1:CLA604
|
4.6
|
108.1
|
1.0
|
C38
|
1:II0617
|
4.7
|
101.8
|
1.0
|
CA
|
1:GLY105
|
4.7
|
101.1
|
1.0
|
O
|
1:GLY105
|
4.8
|
103.2
|
1.0
|
NE2
|
1:GLN109
|
4.9
|
99.5
|
1.0
|
CBD
|
1:CLA604
|
4.9
|
98.0
|
1.0
|
CAA
|
1:CLA604
|
5.0
|
99.7
|
1.0
|
|
Magnesium binding site 5 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 5 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg605
b:103.8
occ:1.00
|
MG
|
1:CLA605
|
0.0
|
103.8
|
1.0
|
ND
|
1:CLA605
|
1.9
|
103.0
|
1.0
|
NA
|
1:CLA605
|
1.9
|
102.5
|
1.0
|
NB
|
1:CLA605
|
1.9
|
100.7
|
1.0
|
NC
|
1:CLA605
|
2.0
|
104.2
|
1.0
|
C4D
|
1:CLA605
|
2.9
|
100.2
|
1.0
|
C4A
|
1:CLA605
|
3.0
|
99.0
|
1.0
|
C1C
|
1:CLA605
|
3.0
|
99.3
|
1.0
|
C1B
|
1:CLA605
|
3.0
|
100.8
|
1.0
|
C4B
|
1:CLA605
|
3.0
|
102.0
|
1.0
|
C1A
|
1:CLA605
|
3.1
|
101.0
|
1.0
|
C4C
|
1:CLA605
|
3.1
|
104.0
|
1.0
|
C1D
|
1:CLA605
|
3.2
|
100.6
|
1.0
|
CHB
|
1:CLA605
|
3.3
|
97.4
|
1.0
|
OE1
|
1:GLN141
|
3.4
|
102.9
|
1.0
|
CHA
|
1:CLA605
|
3.4
|
99.0
|
1.0
|
CHC
|
1:CLA605
|
3.4
|
99.9
|
1.0
|
CHD
|
1:CLA605
|
3.6
|
100.9
|
1.0
|
O2A
|
2:CLA611
|
3.7
|
86.8
|
1.0
|
C3D
|
1:CLA605
|
4.2
|
101.1
|
1.0
|
NE1
|
1:TRP145
|
4.2
|
92.5
|
1.0
|
C3B
|
1:CLA605
|
4.2
|
102.3
|
1.0
|
C2B
|
1:CLA605
|
4.2
|
100.6
|
1.0
|
C2D
|
1:CLA605
|
4.3
|
100.7
|
1.0
|
C2C
|
1:CLA605
|
4.3
|
98.3
|
1.0
|
C3A
|
1:CLA605
|
4.3
|
98.2
|
1.0
|
C3C
|
1:CLA605
|
4.3
|
100.9
|
1.0
|
C2A
|
1:CLA605
|
4.3
|
101.6
|
1.0
|
CGA
|
2:CLA611
|
4.4
|
90.1
|
1.0
|
CD
|
1:GLN141
|
4.5
|
102.3
|
1.0
|
O1A
|
2:CLA611
|
4.6
|
86.8
|
1.0
|
C27
|
1:II0617
|
4.6
|
102.8
|
1.0
|
CBD
|
1:CLA605
|
4.9
|
100.5
|
1.0
|
CD1
|
1:TRP145
|
4.9
|
94.5
|
1.0
|
CG
|
1:GLN141
|
5.0
|
97.4
|
1.0
|
|
Magnesium binding site 6 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 6 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg606
b:101.5
occ:1.00
|
MG
|
1:CLA606
|
0.0
|
101.5
|
1.0
|
NA
|
1:CLA606
|
1.9
|
90.7
|
1.0
|
ND
|
1:CLA606
|
1.9
|
89.0
|
1.0
|
NB
|
1:CLA606
|
2.0
|
89.4
|
1.0
|
NC
|
1:CLA606
|
2.0
|
91.5
|
1.0
|
C4D
|
1:CLA606
|
2.9
|
88.4
|
1.0
|
C4A
|
1:CLA606
|
2.9
|
88.1
|
1.0
|
C1C
|
1:CLA606
|
3.0
|
89.6
|
1.0
|
C1B
|
1:CLA606
|
3.0
|
88.9
|
1.0
|
C1A
|
1:CLA606
|
3.0
|
87.8
|
1.0
|
C4B
|
1:CLA606
|
3.1
|
86.1
|
1.0
|
C4C
|
1:CLA606
|
3.1
|
87.3
|
1.0
|
NE2
|
1:HIS130
|
3.2
|
89.5
|
1.0
|
C1D
|
1:CLA606
|
3.2
|
88.3
|
1.0
|
CHB
|
1:CLA606
|
3.3
|
90.7
|
1.0
|
CHA
|
1:CLA606
|
3.4
|
89.2
|
1.0
|
CHC
|
1:CLA606
|
3.4
|
88.2
|
1.0
|
CHD
|
1:CLA606
|
3.6
|
89.4
|
1.0
|
CE1
|
1:HIS130
|
4.0
|
90.4
|
1.0
|
CD2
|
1:HIS130
|
4.1
|
95.0
|
1.0
|
C3D
|
1:CLA606
|
4.2
|
89.1
|
1.0
|
C2B
|
1:CLA606
|
4.2
|
86.0
|
1.0
|
C3B
|
1:CLA606
|
4.2
|
86.0
|
1.0
|
C2C
|
1:CLA606
|
4.3
|
88.4
|
1.0
|
C2D
|
1:CLA606
|
4.3
|
87.4
|
1.0
|
C3A
|
1:CLA606
|
4.3
|
82.8
|
1.0
|
C3C
|
1:CLA606
|
4.3
|
85.3
|
1.0
|
C2A
|
1:CLA606
|
4.3
|
86.3
|
1.0
|
CBA
|
1:CLA606
|
4.7
|
89.3
|
1.0
|
CBD
|
1:CLA606
|
4.9
|
90.0
|
1.0
|
|
Magnesium binding site 7 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 7 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg607
b:84.5
occ:1.00
|
MG
|
1:CLA607
|
0.0
|
84.5
|
1.0
|
NA
|
1:CLA607
|
1.9
|
78.8
|
1.0
|
ND
|
1:CLA607
|
1.9
|
81.0
|
1.0
|
NB
|
1:CLA607
|
2.0
|
80.2
|
1.0
|
NC
|
1:CLA607
|
2.0
|
83.2
|
1.0
|
OE2
|
1:GLU150
|
2.7
|
83.6
|
1.0
|
C4D
|
1:CLA607
|
2.9
|
81.6
|
1.0
|
C4A
|
1:CLA607
|
2.9
|
78.5
|
1.0
|
C1C
|
1:CLA607
|
3.0
|
81.5
|
1.0
|
C1B
|
1:CLA607
|
3.0
|
81.8
|
1.0
|
C1A
|
1:CLA607
|
3.0
|
79.3
|
1.0
|
C4B
|
1:CLA607
|
3.1
|
78.6
|
1.0
|
C4C
|
1:CLA607
|
3.1
|
80.3
|
1.0
|
C1D
|
1:CLA607
|
3.2
|
79.1
|
1.0
|
CHB
|
1:CLA607
|
3.3
|
81.5
|
1.0
|
CHA
|
1:CLA607
|
3.4
|
81.6
|
1.0
|
CHC
|
1:CLA607
|
3.4
|
78.8
|
1.0
|
CHD
|
1:CLA607
|
3.6
|
79.0
|
1.0
|
CD
|
1:GLU150
|
3.8
|
82.7
|
1.0
|
CMD
|
1:CLA603
|
3.8
|
73.4
|
1.0
|
C3D
|
1:CLA607
|
4.2
|
75.8
|
1.0
|
CG
|
1:GLU150
|
4.2
|
81.0
|
1.0
|
C2B
|
1:CLA607
|
4.2
|
81.0
|
1.0
|
C3B
|
1:CLA607
|
4.2
|
78.0
|
1.0
|
C2C
|
1:CLA607
|
4.3
|
81.3
|
1.0
|
C2D
|
1:CLA607
|
4.3
|
78.2
|
1.0
|
C3A
|
1:CLA607
|
4.3
|
77.6
|
1.0
|
C3C
|
1:CLA607
|
4.3
|
79.8
|
1.0
|
C2A
|
1:CLA607
|
4.3
|
74.8
|
1.0
|
CB
|
1:GLU150
|
4.7
|
78.2
|
1.0
|
CBA
|
1:CLA607
|
4.8
|
82.0
|
1.0
|
C2D
|
1:CLA603
|
4.8
|
74.6
|
1.0
|
OE1
|
1:GLU150
|
4.9
|
85.3
|
1.0
|
OBD
|
1:CLA603
|
4.9
|
75.8
|
1.0
|
CBD
|
1:CLA607
|
4.9
|
76.1
|
1.0
|
|
Magnesium binding site 8 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 8 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg608
b:88.1
occ:1.00
|
MG
|
1:CLA608
|
0.0
|
88.1
|
1.0
|
NA
|
1:CLA608
|
1.9
|
88.8
|
1.0
|
ND
|
1:CLA608
|
2.0
|
82.6
|
1.0
|
NB
|
1:CLA608
|
2.0
|
87.8
|
1.0
|
NC
|
1:CLA608
|
2.0
|
90.0
|
1.0
|
C19
|
1:II0614
|
2.9
|
88.1
|
1.0
|
OE2
|
1:GLU192
|
2.9
|
84.3
|
1.0
|
C4D
|
1:CLA608
|
2.9
|
83.8
|
1.0
|
C4A
|
1:CLA608
|
2.9
|
83.8
|
1.0
|
C1B
|
1:CLA608
|
3.0
|
83.9
|
1.0
|
C1C
|
1:CLA608
|
3.0
|
86.7
|
1.0
|
C1A
|
1:CLA608
|
3.1
|
84.7
|
1.0
|
C4B
|
1:CLA608
|
3.1
|
85.8
|
1.0
|
C4C
|
1:CLA608
|
3.1
|
88.8
|
1.0
|
C1D
|
1:CLA608
|
3.2
|
85.4
|
1.0
|
CHB
|
1:CLA608
|
3.3
|
82.9
|
1.0
|
CHA
|
1:CLA608
|
3.4
|
84.6
|
1.0
|
CHC
|
1:CLA608
|
3.5
|
85.1
|
1.0
|
CHD
|
1:CLA608
|
3.6
|
86.5
|
1.0
|
NH1
|
1:ARG97
|
3.7
|
81.8
|
1.0
|
CD
|
1:GLU192
|
3.9
|
85.8
|
1.0
|
C3D
|
1:CLA608
|
4.2
|
84.9
|
1.0
|
C2B
|
1:CLA608
|
4.2
|
84.3
|
1.0
|
C3B
|
1:CLA608
|
4.2
|
82.6
|
1.0
|
O2A
|
1:CLA608
|
4.3
|
95.9
|
1.0
|
C13
|
1:II0614
|
4.3
|
88.0
|
1.0
|
C2D
|
1:CLA608
|
4.3
|
87.1
|
1.0
|
C2C
|
1:CLA608
|
4.3
|
83.4
|
1.0
|
C3A
|
1:CLA608
|
4.3
|
83.4
|
1.0
|
C3C
|
1:CLA608
|
4.3
|
85.1
|
1.0
|
C2A
|
1:CLA608
|
4.3
|
83.3
|
1.0
|
C2
|
1:CLA608
|
4.4
|
92.1
|
1.0
|
OE1
|
1:GLU192
|
4.6
|
87.0
|
1.0
|
CG
|
1:GLU192
|
4.8
|
84.2
|
1.0
|
CZ
|
1:ARG97
|
4.9
|
75.6
|
1.0
|
CBD
|
1:CLA608
|
4.9
|
84.5
|
1.0
|
C21
|
1:II0614
|
4.9
|
88.6
|
1.0
|
C1
|
1:CLA608
|
4.9
|
93.8
|
1.0
|
|
Magnesium binding site 9 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 9 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg609
b:95.4
occ:1.00
|
MG
|
1:CLA609
|
0.0
|
95.4
|
1.0
|
NA
|
1:CLA609
|
1.9
|
89.9
|
1.0
|
ND
|
1:CLA609
|
1.9
|
88.8
|
1.0
|
NB
|
1:CLA609
|
2.0
|
90.6
|
1.0
|
NC
|
1:CLA609
|
2.0
|
93.4
|
1.0
|
C4D
|
1:CLA609
|
2.9
|
88.6
|
1.0
|
C4A
|
1:CLA609
|
2.9
|
89.6
|
1.0
|
C1C
|
1:CLA609
|
3.0
|
89.3
|
1.0
|
C1A
|
1:CLA609
|
3.0
|
88.2
|
1.0
|
C1B
|
1:CLA609
|
3.0
|
88.2
|
1.0
|
C4B
|
1:CLA609
|
3.1
|
91.3
|
1.0
|
C4C
|
1:CLA609
|
3.1
|
90.3
|
1.0
|
C1D
|
1:CLA609
|
3.2
|
90.3
|
1.0
|
CHB
|
1:CLA609
|
3.3
|
89.9
|
1.0
|
CHA
|
1:CLA609
|
3.4
|
88.3
|
1.0
|
CHC
|
1:CLA609
|
3.4
|
90.9
|
1.0
|
CHD
|
1:CLA609
|
3.6
|
91.6
|
1.0
|
C3D
|
1:CLA609
|
4.2
|
90.5
|
1.0
|
C2B
|
1:CLA609
|
4.2
|
89.1
|
1.0
|
C3B
|
1:CLA609
|
4.2
|
91.9
|
1.0
|
C2C
|
1:CLA609
|
4.3
|
85.7
|
1.0
|
C2D
|
1:CLA609
|
4.3
|
88.3
|
1.0
|
C3A
|
1:CLA609
|
4.3
|
88.6
|
1.0
|
C2A
|
1:CLA609
|
4.3
|
87.5
|
1.0
|
C3C
|
1:CLA609
|
4.3
|
85.3
|
1.0
|
NZ
|
1:LYS194
|
4.7
|
83.2
|
1.0
|
CMD
|
1:KC2610
|
4.8
|
87.6
|
1.0
|
CBD
|
1:CLA609
|
4.9
|
89.3
|
1.0
|
CAA
|
1:CLA609
|
5.0
|
87.8
|
1.0
|
|
Magnesium binding site 10 out
of 236 in 7y8a
Go back to
Magnesium Binding Sites List in 7y8a
Magnesium binding site 10 out
of 236 in the Cryo-Em Structure of Cryptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Cryptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg610
b:98.5
occ:1.00
|
MG
|
1:KC2610
|
0.0
|
98.5
|
1.0
|
ND
|
1:KC2610
|
1.9
|
94.1
|
1.0
|
NA
|
1:KC2610
|
2.1
|
92.1
|
1.0
|
NC
|
1:KC2610
|
2.1
|
91.5
|
1.0
|
NB
|
1:KC2610
|
2.1
|
88.7
|
1.0
|
C4D
|
1:KC2610
|
2.7
|
89.5
|
1.0
|
C1D
|
1:KC2610
|
3.0
|
92.2
|
1.0
|
C1A
|
1:KC2610
|
3.1
|
89.9
|
1.0
|
C4C
|
1:KC2610
|
3.1
|
89.0
|
1.0
|
OD1
|
1:ASN195
|
3.1
|
83.2
|
1.0
|
C4A
|
1:KC2610
|
3.1
|
90.8
|
1.0
|
C1C
|
1:KC2610
|
3.1
|
88.9
|
1.0
|
C1B
|
1:KC2610
|
3.1
|
87.5
|
1.0
|
C4B
|
1:KC2610
|
3.2
|
90.3
|
1.0
|
CHA
|
1:KC2610
|
3.3
|
88.7
|
1.0
|
CHD
|
1:KC2610
|
3.5
|
89.5
|
1.0
|
CHB
|
1:KC2610
|
3.5
|
87.6
|
1.0
|
CHC
|
1:KC2610
|
3.6
|
88.4
|
1.0
|
C3D
|
1:KC2610
|
4.0
|
87.9
|
1.0
|
CG
|
1:ASN195
|
4.1
|
81.7
|
1.0
|
C2D
|
1:KC2610
|
4.1
|
89.8
|
1.0
|
C2A
|
1:KC2610
|
4.3
|
90.2
|
1.0
|
C3C
|
1:KC2610
|
4.3
|
87.9
|
1.0
|
C3A
|
1:KC2610
|
4.3
|
94.5
|
1.0
|
C2C
|
1:KC2610
|
4.3
|
91.5
|
1.0
|
C2B
|
1:KC2610
|
4.4
|
89.3
|
1.0
|
C3B
|
1:KC2610
|
4.4
|
91.0
|
1.0
|
ND2
|
1:ASN195
|
4.4
|
83.2
|
1.0
|
C38
|
1:II0614
|
4.7
|
90.1
|
1.0
|
CBD
|
1:KC2610
|
4.8
|
90.8
|
1.0
|
|
Reference:
L.S.Zhao,
P.Wang,
K.Li,
Q.B.Zhang,
F.Y.He,
C.Y.Li,
H.N.Su,
X.L.Chen,
L.N.Liu,
Y.Z.Zhang.
Structural Basis and Evolution of the Photosystem I-Light-Harvesting Supercomplex of Cryptophyte Algae Plant Cell 2023.
ISSN: ESSN 1532-298X
DOI: 10.1093/PLCELL/KOAD087
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