Magnesium in PDB 7ye2: The Cryo-Em Structure of C. Crescentus Gcra-Tacdown

All present enzymatic activity of The Cryo-Em Structure of C. Crescentus Gcra-Tacdown:
2.7.7.6;

The structure of The Cryo-Em Structure of C. Crescentus Gcra-Tacdown also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Magnesium atom in the The Cryo-Em Structure of C. Crescentus Gcra-Tacdown (pdb code 7ye2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Cryo-Em Structure of C. Crescentus Gcra-Tacdown, PDB code: 7ye2:

Magnesium binding site 1 out of 1 in the The Cryo-Em Structure of C. Crescentus Gcra-Tacdown


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Cryo-Em Structure of C. Crescentus Gcra-Tacdown within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2003 b:19.1 occ:1.00 OD2 D:ASP466 2.1 24.0 1.0 OD1 D:ASP464 2.1 25.4 1.0 CB D:ASP462 2.3 22.4 1.0 N D:ASP462 2.7 22.4 1.0 CA D:ASP462 2.7 22.4 1.0 C D:ASP462 3.1 22.4 1.0 CG D:ASP462 3.1 22.4 1.0 CG D:ASP464 3.2 25.4 1.0 O D:ASP462 3.3 22.4 1.0 CG D:ASP466 3.3 24.0 1.0 OD2 D:ASP462 3.7 22.4 1.0 OD2 D:ASP464 3.7 25.4 1.0 OD1 D:ASP462 3.9 22.4 1.0 N D:PHE463 3.9 19.0 1.0 OD1 D:ASP466 3.9 24.0 1.0 C D:ALA461 3.9 19.5 1.0 N D:ASP464 4.1 25.4 1.0 CB D:ASP466 4.4 24.0 1.0 CA D:ALA461 4.5 19.5 1.0 CB D:ASP464 4.5 25.4 1.0 O D:ASN460 4.7 18.9 1.0 CA D:ASP464 4.8 25.4 1.0 CA D:PHE463 4.8 19.0 1.0 O D:GLY465 4.8 24.9 1.0 O D:ALA461 4.9 19.5 1.0 C D:PHE463 5.0 19.0 1.0

X.X.Wu, Y.Zhang. Cryo-Em Structures of Caulobacter Crescentus Transcription Activation Complex with An Essential Cell Cycle Regulator Gcra Nucleic Acids Res. 2023.
ISSN: ESSN 1362-4962