Magnesium in PDB 7ymi: Psii-Pcb Dimer of Acaryochloris Marina

All present enzymatic activity of Psii-Pcb Dimer of Acaryochloris Marina:
1.10.3.9;

The structure of Psii-Pcb Dimer of Acaryochloris Marina also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 212;

Binding sites:

The binding sites of Magnesium atom in the Psii-Pcb Dimer of Acaryochloris Marina (pdb code 7ymi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 212 binding sites of Magnesium where determined in the Psii-Pcb Dimer of Acaryochloris Marina, PDB code: 7ymi:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:67.8 occ:1.00 MG A:CL7401 0.0 67.8 1.0 ND A:CL7401 2.0 67.8 1.0 NB A:CL7401 2.0 67.8 1.0 NA A:CL7401 2.0 67.8 1.0 NC A:CL7401 2.1 67.8 1.0 NE2 A:HIS198 2.7 42.4 1.0 C4D A:CL7401 3.0 67.8 1.0 C4A A:CL7401 3.0 67.8 1.0 C1B A:CL7401 3.0 67.8 1.0 C4B A:CL7401 3.1 67.8 1.0 C1A A:CL7401 3.1 67.8 1.0 C1C A:CL7401 3.1 67.8 1.0 C1D A:CL7401 3.1 67.8 1.0 C4C A:CL7401 3.1 67.8 1.0 CHB A:CL7401 3.4 67.8 1.0 CD2 A:HIS198 3.4 42.4 1.0 CHA A:CL7401 3.4 67.8 1.0 CHC A:CL7401 3.5 67.8 1.0 CHD A:CL7401 3.6 67.8 1.0 CE1 A:HIS198 3.8 42.4 1.0 OBB D:CL7404 4.0 40.1 1.0 C3D A:CL7401 4.2 67.8 1.0 C3B A:CL7401 4.3 67.8 1.0 C2B A:CL7401 4.3 67.8 1.0 C3A A:CL7401 4.3 67.8 1.0 C2D A:CL7401 4.3 67.8 1.0 C2C A:CL7401 4.4 67.8 1.0 C3C A:CL7401 4.4 67.8 1.0 CAB D:CL7404 4.4 40.1 1.0 CE A:MET183 4.4 45.0 1.0 C2A A:CL7401 4.4 67.8 1.0 CG A:HIS198 4.7 42.4 1.0 CG2 A:VAL202 4.8 41.5 1.0 ND1 A:HIS198 4.8 42.4 1.0 CBD A:CL7401 4.9 67.8 1.0

Magnesium binding site 2 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:45.9 occ:1.00 MG A:CL7403 0.0 45.9 1.0 ND A:CL7403 2.0 45.9 1.0 NB A:CL7403 2.0 45.9 1.0 NA A:CL7403 2.0 45.9 1.0 NC A:CL7403 2.1 45.9 1.0 NE2 A:HIS118 2.8 41.9 1.0 C4D A:CL7403 2.9 45.9 1.0 C4A A:CL7403 3.0 45.9 1.0 C1B A:CL7403 3.0 45.9 1.0 C4B A:CL7403 3.0 45.9 1.0 C1A A:CL7403 3.1 45.9 1.0 C1C A:CL7403 3.1 45.9 1.0 C1D A:CL7403 3.1 45.9 1.0 C4C A:CL7403 3.1 45.9 1.0 CHB A:CL7403 3.4 45.9 1.0 CHA A:CL7403 3.4 45.9 1.0 CHC A:CL7403 3.4 45.9 1.0 CHD A:CL7403 3.6 45.9 1.0 CE1 A:HIS118 3.6 41.9 1.0 CD2 A:HIS118 3.8 41.9 1.0 CG2 I:THR8 4.1 49.3 1.0 C3D A:CL7403 4.1 45.9 1.0 C3B A:CL7403 4.2 45.9 1.0 C2B A:CL7403 4.2 45.9 1.0 CD1 I:ILE12 4.2 45.7 1.0 C2D A:CL7403 4.3 45.9 1.0 C3A A:CL7403 4.3 45.9 1.0 C2C A:CL7403 4.3 45.9 1.0 C3C A:CL7403 4.4 45.9 1.0 C2A A:CL7403 4.4 45.9 1.0 CG1 I:ILE12 4.6 45.7 1.0 ND1 A:HIS118 4.7 41.9 1.0 CBD A:CL7403 4.8 45.9 1.0 CG A:HIS118 4.9 41.9 1.0

Magnesium binding site 3 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg406 b:39.4 occ:1.00 MG A:CL7406 0.0 39.4 1.0 NB A:CL7406 2.0 39.4 1.0 ND A:CL7406 2.0 39.4 1.0 NA A:CL7406 2.0 39.4 1.0 NC A:CL7406 2.1 39.4 1.0 C4D A:CL7406 2.9 39.4 1.0 C4A A:CL7406 3.0 39.4 1.0 C1A A:CL7406 3.0 39.4 1.0 C1B A:CL7406 3.0 39.4 1.0 C4B A:CL7406 3.0 39.4 1.0 C1C A:CL7406 3.1 39.4 1.0 C4C A:CL7406 3.1 39.4 1.0 C1D A:CL7406 3.1 39.4 1.0 CHA A:CL7406 3.4 39.4 1.0 CHB A:CL7406 3.4 39.4 1.0 CHC A:CL7406 3.4 39.4 1.0 CHD A:CL7406 3.6 39.4 1.0 O1A A:CL7406 4.1 39.4 1.0 CBB A:PHO402 4.1 38.1 1.0 C3D A:CL7406 4.1 39.4 1.0 C3B A:CL7406 4.2 39.4 1.0 C2B A:CL7406 4.2 39.4 1.0 C3A A:CL7406 4.3 39.4 1.0 C2D A:CL7406 4.3 39.4 1.0 C2C A:CL7406 4.3 39.4 1.0 C3C A:CL7406 4.3 39.4 1.0 C2A A:CL7406 4.4 39.4 1.0 CG2 A:THR179 4.5 45.5 1.0 OG1 A:THR179 4.7 45.5 1.0 CBD A:CL7406 4.8 39.4 1.0 C19 A:PHO402 4.9 38.1 1.0

Magnesium binding site 4 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:60.0 occ:1.00 MG B:CL7601 0.0 60.0 1.0 ND B:CL7601 2.0 60.0 1.0 NB B:CL7601 2.0 60.0 1.0 NA B:CL7601 2.0 60.0 1.0 NC B:CL7601 2.1 60.0 1.0 C4D B:CL7601 2.9 60.0 1.0 C4A B:CL7601 3.0 60.0 1.0 C1B B:CL7601 3.1 60.0 1.0 C4B B:CL7601 3.1 60.0 1.0 C1A B:CL7601 3.1 60.0 1.0 C1C B:CL7601 3.1 60.0 1.0 C4C B:CL7601 3.1 60.0 1.0 C1D B:CL7601 3.1 60.0 1.0 CHB B:CL7601 3.4 60.0 1.0 CHA B:CL7601 3.4 60.0 1.0 CHC B:CL7601 3.4 60.0 1.0 C28 4:LHG401 3.5 67.0 1.0 CHD B:CL7601 3.6 60.0 1.0 O B:TRP193 3.9 55.6 1.0 C29 4:LHG401 4.1 67.0 1.0 C3D B:CL7601 4.1 60.0 1.0 C30 4:LHG401 4.2 67.0 1.0 C3B B:CL7601 4.2 60.0 1.0 C2B B:CL7601 4.3 60.0 1.0 C2D B:CL7601 4.3 60.0 1.0 C3A B:CL7601 4.3 60.0 1.0 C2C B:CL7601 4.4 60.0 1.0 C3C B:CL7601 4.4 60.0 1.0 C27 4:LHG401 4.4 67.0 1.0 C2A B:CL7601 4.4 60.0 1.0 OBB B:CL7602 4.7 46.4 1.0 C26 4:LHG401 4.7 67.0 1.0 CBD B:CL7601 4.8 60.0 1.0 CD1 B:TRP193 4.9 55.6 1.0 CB B:TRP193 4.9 55.6 1.0

Magnesium binding site 5 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:46.4 occ:1.00 MG B:CL7602 0.0 46.4 1.0 ND B:CL7602 2.0 46.4 1.0 NB B:CL7602 2.0 46.4 1.0 NA B:CL7602 2.0 46.4 1.0 NC B:CL7602 2.1 46.4 1.0 ND1 B:HIS209 2.9 43.4 1.0 C4D B:CL7602 2.9 46.4 1.0 C4A B:CL7602 3.0 46.4 1.0 C1B B:CL7602 3.0 46.4 1.0 C4B B:CL7602 3.0 46.4 1.0 C1A B:CL7602 3.0 46.4 1.0 C1C B:CL7602 3.1 46.4 1.0 C4C B:CL7602 3.1 46.4 1.0 C1D B:CL7602 3.1 46.4 1.0 CE H:MET46 3.3 57.0 1.0 CHB B:CL7602 3.4 46.4 1.0 CHA B:CL7602 3.4 46.4 1.0 CHC B:CL7602 3.4 46.4 1.0 CHD B:CL7602 3.5 46.4 1.0 CE1 B:HIS209 3.6 43.4 1.0 CG B:HIS209 3.8 43.4 1.0 C3D B:CL7602 4.1 46.4 1.0 CB B:HIS209 4.2 43.4 1.0 C3B B:CL7602 4.2 46.4 1.0 C2B B:CL7602 4.2 46.4 1.0 C3A B:CL7602 4.3 46.4 1.0 C2D B:CL7602 4.3 46.4 1.0 C2C B:CL7602 4.4 46.4 1.0 C3C B:CL7602 4.4 46.4 1.0 SD H:MET46 4.4 57.0 1.0 C2A B:CL7602 4.4 46.4 1.0 NE2 B:HIS209 4.7 43.4 1.0 CA B:HIS209 4.8 43.4 1.0 CD2 B:HIS209 4.8 43.4 1.0 CBD B:CL7602 4.8 46.4 1.0

Magnesium binding site 6 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg603 b:40.6 occ:1.00 MG B:CL7603 0.0 40.6 1.0 ND B:CL7603 2.0 40.6 1.0 NB B:CL7603 2.0 40.6 1.0 NA B:CL7603 2.0 40.6 1.0 NC B:CL7603 2.1 40.6 1.0 NE2 B:HIS210 2.8 42.0 1.0 C4D B:CL7603 2.9 40.6 1.0 C4A B:CL7603 3.0 40.6 1.0 C1B B:CL7603 3.0 40.6 1.0 C4B B:CL7603 3.0 40.6 1.0 C1A B:CL7603 3.1 40.6 1.0 C1C B:CL7603 3.1 40.6 1.0 C4C B:CL7603 3.1 40.6 1.0 C1D B:CL7603 3.1 40.6 1.0 CHB B:CL7603 3.4 40.6 1.0 CHA B:CL7603 3.4 40.6 1.0 CHC B:CL7603 3.4 40.6 1.0 CD2 B:HIS210 3.4 42.0 1.0 CHD B:CL7603 3.6 40.6 1.0 C6 B:CL7605 3.8 37.1 1.0 CE1 B:HIS210 4.0 42.0 1.0 C3D B:CL7603 4.1 40.6 1.0 C3B B:CL7603 4.2 40.6 1.0 C2B B:CL7603 4.2 40.6 1.0 C3A B:CL7603 4.3 40.6 1.0 C2D B:CL7603 4.3 40.6 1.0 C2C B:CL7603 4.3 40.6 1.0 C3C B:CL7603 4.4 40.6 1.0 C7 B:CL7605 4.4 37.1 1.0 C2A B:CL7603 4.4 40.6 1.0 C8 B:CL7605 4.5 37.1 1.0 CG B:HIS210 4.7 42.0 1.0 CBD B:CL7603 4.8 40.6 1.0 C10 B:CL7605 4.9 37.1 1.0 ND1 B:HIS210 5.0 42.0 1.0

Magnesium binding site 7 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg604 b:36.4 occ:1.00 MG B:CL7604 0.0 36.4 1.0 ND B:CL7604 2.0 36.4 1.0 NB B:CL7604 2.0 36.4 1.0 NA B:CL7604 2.0 36.4 1.0 NC B:CL7604 2.1 36.4 1.0 NE2 B:HIS455 2.8 37.6 1.0 C4D B:CL7604 2.9 36.4 1.0 C4A B:CL7604 3.0 36.4 1.0 C1B B:CL7604 3.0 36.4 1.0 C4B B:CL7604 3.0 36.4 1.0 C1A B:CL7604 3.1 36.4 1.0 C1C B:CL7604 3.1 36.4 1.0 C1D B:CL7604 3.1 36.4 1.0 C4C B:CL7604 3.1 36.4 1.0 CHB B:CL7604 3.4 36.4 1.0 CHA B:CL7604 3.4 36.4 1.0 CD2 B:HIS455 3.4 37.6 1.0 C14 B:CL7610 3.4 32.0 1.0 CHC B:CL7604 3.4 36.4 1.0 CHD B:CL7604 3.6 36.4 1.0 CE1 B:HIS455 3.9 37.6 1.0 C3D B:CL7604 4.1 36.4 1.0 C3B B:CL7604 4.2 36.4 1.0 C2B B:CL7604 4.2 36.4 1.0 C2D B:CL7604 4.3 36.4 1.0 C3A B:CL7604 4.3 36.4 1.0 C2C B:CL7604 4.4 36.4 1.0 C3C B:CL7604 4.4 36.4 1.0 C2A B:CL7604 4.4 36.4 1.0 C13 B:CL7610 4.7 32.0 1.0 CG B:HIS455 4.7 37.6 1.0 C16 B:CL7610 4.7 32.0 1.0 CBD B:CL7604 4.8 36.4 1.0 C15 B:CL7610 4.9 32.0 1.0 ND1 B:HIS455 4.9 37.6 1.0 CAB B:CL7613 5.0 30.9 1.0

Magnesium binding site 8 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg605 b:37.1 occ:1.00 MG B:CL7605 0.0 37.1 1.0 ND B:CL7605 2.0 37.1 1.0 NB B:CL7605 2.0 37.1 1.0 NA B:CL7605 2.0 37.1 1.0 NC B:CL7605 2.1 37.1 1.0 NE2 B:HIS108 2.9 39.8 1.0 C4D B:CL7605 2.9 37.1 1.0 C4A B:CL7605 3.0 37.1 1.0 C1A B:CL7605 3.0 37.1 1.0 C4B B:CL7605 3.0 37.1 1.0 C1B B:CL7605 3.0 37.1 1.0 C1C B:CL7605 3.1 37.1 1.0 C4C B:CL7605 3.1 37.1 1.0 C1D B:CL7605 3.1 37.1 1.0 CHB B:CL7605 3.4 37.1 1.0 CHA B:CL7605 3.4 37.1 1.0 CHC B:CL7605 3.4 37.1 1.0 C4 B:CL7604 3.5 36.4 1.0 CHD B:CL7605 3.6 37.1 1.0 C3 B:CL7604 3.6 36.4 1.0 CE1 B:HIS108 3.7 39.8 1.0 CD2 B:HIS108 3.8 39.8 1.0 C2 B:CL7604 3.9 36.4 1.0 O1A B:CL7605 4.1 37.1 1.0 C3D B:CL7605 4.1 37.1 1.0 C3B B:CL7605 4.2 37.1 1.0 C2B B:CL7605 4.2 37.1 1.0 C3A B:CL7605 4.3 37.1 1.0 C2D B:CL7605 4.3 37.1 1.0 C2C B:CL7605 4.3 37.1 1.0 C5 B:CL7604 4.3 36.4 1.0 C3C B:CL7605 4.4 37.1 1.0 C2A B:CL7605 4.4 37.1 1.0 ND1 B:HIS108 4.8 39.8 1.0 C1 B:CL7604 4.8 36.4 1.0 CBD B:CL7605 4.8 37.1 1.0 CG B:HIS108 4.9 39.8 1.0 O2A B:CL7604 4.9 36.4 1.0

Magnesium binding site 9 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg606 b:44.0 occ:1.00 MG B:CL7606 0.0 44.0 1.0 ND B:CL7606 2.0 44.0 1.0 NB B:CL7606 2.0 44.0 1.0 NA B:CL7606 2.0 44.0 1.0 NC B:CL7606 2.1 44.0 1.0 ND1 B:HIS165 2.8 42.1 1.0 C4D B:CL7606 2.9 44.0 1.0 C4A B:CL7606 3.0 44.0 1.0 C1A B:CL7606 3.1 44.0 1.0 C1B B:CL7606 3.1 44.0 1.0 C4B B:CL7606 3.1 44.0 1.0 C1C B:CL7606 3.1 44.0 1.0 C4C B:CL7606 3.1 44.0 1.0 C1D B:CL7606 3.1 44.0 1.0 CHA B:CL7606 3.4 44.0 1.0 CHB B:CL7606 3.4 44.0 1.0 CHC B:CL7606 3.4 44.0 1.0 CHD B:CL7606 3.5 44.0 1.0 CE1 B:HIS165 3.6 42.1 1.0 CG B:HIS165 3.9 42.1 1.0 C3D B:CL7606 4.1 44.0 1.0 CB B:HIS165 4.2 42.1 1.0 C3B B:CL7606 4.2 44.0 1.0 C2B B:CL7606 4.3 44.0 1.0 C2D B:CL7606 4.3 44.0 1.0 C3A B:CL7606 4.3 44.0 1.0 C2C B:CL7606 4.3 44.0 1.0 C3C B:CL7606 4.3 44.0 1.0 C2A B:CL7606 4.4 44.0 1.0 CBA B:CL7606 4.7 44.0 1.0 NE2 B:HIS165 4.8 42.1 1.0 CBD B:CL7606 4.8 44.0 1.0 CD2 B:HIS165 4.9 42.1 1.0

Magnesium binding site 10 out of 212 in the Psii-Pcb Dimer of Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Psii-Pcb Dimer of Acaryochloris Marina within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg607 b:49.5 occ:1.00 MG B:CL7607 0.0 49.5 1.0 ND B:CL7607 2.0 49.5 1.0 NB B:CL7607 2.0 49.5 1.0 NA B:CL7607 2.0 49.5 1.0 NC B:CL7607 2.1 49.5 1.0 C4D B:CL7607 2.9 49.5 1.0 C4A B:CL7607 3.0 49.5 1.0 C1B B:CL7607 3.0 49.5 1.0 C1A B:CL7607 3.1 49.5 1.0 C4B B:CL7607 3.1 49.5 1.0 C1C B:CL7607 3.1 49.5 1.0 C4C B:CL7607 3.1 49.5 1.0 C1D B:CL7607 3.1 49.5 1.0 CHB B:CL7607 3.4 49.5 1.0 CHA B:CL7607 3.4 49.5 1.0 C12 B:LMG621 3.4 55.2 1.0 CHC B:CL7607 3.4 49.5 1.0 CHD B:CL7607 3.5 49.5 1.0 C14 B:LMG621 3.7 55.2 1.0 CE B:MET37 3.9 46.0 1.0 C13 B:LMG621 4.1 55.2 1.0 C3D B:CL7607 4.1 49.5 1.0 C3B B:CL7607 4.2 49.5 1.0 C2B B:CL7607 4.2 49.5 1.0 C2D B:CL7607 4.3 49.5 1.0 C3A B:CL7607 4.3 49.5 1.0 C2C B:CL7607 4.4 49.5 1.0 C3C B:CL7607 4.4 49.5 1.0 C2A B:CL7607 4.4 49.5 1.0 C11 B:LMG621 4.5 55.2 1.0 O9 B:LMG621 4.6 55.2 1.0 CBD B:CL7607 4.8 49.5 1.0 C10 B:LMG621 4.9 55.2 1.0

L.L.Shen, Y.Z.Gao, W.D.Wang, X.Zhang, J.R.Shen, P.Y.Wang, G.Y.Han. Structure of A Large Photosystem II Supercomplex From Acaryochloris Marina. To Be Published.