Magnesium in PDB 7yml: Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Other elements in 7yml:
The structure of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
25;
Binding sites:
The binding sites of Magnesium atom in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
(pdb code 7yml). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 25 binding sites of Magnesium where determined in the
Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus, PDB code: 7yml:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 1 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg301
b:33.3
occ:1.00
|
MG
|
L:BCL301
|
0.0
|
33.3
|
1.0
|
NC
|
L:BCL301
|
2.0
|
24.2
|
1.0
|
NA
|
L:BCL301
|
2.0
|
30.4
|
1.0
|
ND
|
L:BCL301
|
2.0
|
24.3
|
1.0
|
NB
|
L:BCL301
|
2.0
|
29.7
|
1.0
|
NE2
|
L:HIS174
|
2.3
|
29.6
|
1.0
|
CE1
|
L:HIS174
|
2.7
|
24.6
|
1.0
|
C4D
|
L:BCL301
|
2.9
|
18.6
|
1.0
|
C4C
|
L:BCL301
|
3.0
|
25.5
|
1.0
|
C4A
|
L:BCL301
|
3.0
|
20.8
|
1.0
|
C1A
|
L:BCL301
|
3.0
|
27.1
|
1.0
|
C1C
|
L:BCL301
|
3.0
|
21.4
|
1.0
|
C1B
|
L:BCL301
|
3.1
|
25.7
|
1.0
|
C4B
|
L:BCL301
|
3.1
|
20.2
|
1.0
|
C1D
|
L:BCL301
|
3.2
|
21.5
|
1.0
|
CHB
|
L:BCL301
|
3.4
|
18.6
|
1.0
|
CHC
|
L:BCL301
|
3.4
|
21.8
|
1.0
|
CHA
|
L:BCL301
|
3.4
|
19.8
|
1.0
|
CHD
|
L:BCL301
|
3.5
|
20.3
|
1.0
|
CAB
|
M:BCL404
|
3.6
|
19.6
|
1.0
|
CD2
|
L:HIS174
|
3.6
|
31.3
|
1.0
|
CBB
|
M:BCL404
|
3.6
|
18.1
|
1.0
|
OBB
|
M:BCL404
|
3.6
|
37.8
|
1.0
|
ND1
|
L:HIS174
|
4.0
|
29.9
|
1.0
|
C3D
|
L:BCL301
|
4.2
|
24.5
|
1.0
|
C3A
|
L:BCL301
|
4.3
|
22.6
|
1.0
|
C3B
|
M:BCL404
|
4.3
|
16.9
|
1.0
|
C3C
|
L:BCL301
|
4.3
|
24.6
|
1.0
|
C2A
|
L:BCL301
|
4.3
|
19.7
|
1.0
|
C2C
|
L:BCL301
|
4.3
|
20.8
|
1.0
|
C3B
|
L:BCL301
|
4.4
|
21.0
|
1.0
|
C2B
|
L:BCL301
|
4.4
|
25.1
|
1.0
|
C2D
|
L:BCL301
|
4.4
|
20.3
|
1.0
|
CG
|
L:HIS174
|
4.4
|
30.8
|
1.0
|
CD2
|
L:PHE168
|
4.7
|
27.1
|
1.0
|
CBD
|
L:BCL301
|
4.9
|
23.0
|
1.0
|
CMA
|
L:BCL301
|
4.9
|
27.8
|
1.0
|
CD1
|
L:ILE178
|
5.0
|
34.5
|
1.0
|
|
Magnesium binding site 2 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 2 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg310
b:36.2
occ:1.00
|
MG
|
L:BCL310
|
0.0
|
36.2
|
1.0
|
NA
|
L:BCL310
|
2.0
|
32.5
|
1.0
|
NC
|
L:BCL310
|
2.0
|
33.1
|
1.0
|
ND
|
L:BCL310
|
2.0
|
30.2
|
1.0
|
NB
|
L:BCL310
|
2.0
|
22.9
|
1.0
|
NE2
|
L:HIS154
|
2.5
|
19.3
|
1.0
|
C4D
|
L:BCL310
|
2.9
|
19.9
|
1.0
|
C1A
|
L:BCL310
|
3.0
|
30.2
|
1.0
|
C4A
|
L:BCL310
|
3.0
|
31.5
|
1.0
|
C1C
|
L:BCL310
|
3.0
|
26.5
|
1.0
|
C4C
|
L:BCL310
|
3.0
|
30.1
|
1.0
|
C1B
|
L:BCL310
|
3.0
|
25.0
|
1.0
|
C4B
|
L:BCL310
|
3.1
|
23.8
|
1.0
|
C1D
|
L:BCL310
|
3.2
|
30.3
|
1.0
|
CHB
|
L:BCL310
|
3.4
|
25.5
|
1.0
|
CD2
|
L:HIS154
|
3.4
|
22.8
|
1.0
|
CHC
|
L:BCL310
|
3.4
|
22.4
|
1.0
|
CHA
|
L:BCL310
|
3.4
|
22.3
|
1.0
|
CE1
|
L:HIS154
|
3.5
|
23.0
|
1.0
|
CHD
|
L:BCL310
|
3.5
|
20.2
|
1.0
|
C3D
|
L:BCL310
|
4.2
|
25.9
|
1.0
|
C2A
|
L:BCL310
|
4.3
|
32.7
|
1.0
|
C3A
|
L:BCL310
|
4.3
|
27.9
|
1.0
|
C2C
|
L:BCL310
|
4.3
|
30.5
|
1.0
|
OBB
|
L:BPH302
|
4.3
|
30.6
|
1.0
|
C3C
|
L:BCL310
|
4.3
|
34.0
|
1.0
|
C3B
|
L:BCL310
|
4.4
|
29.8
|
1.0
|
C2B
|
L:BCL310
|
4.4
|
30.0
|
1.0
|
C2D
|
L:BCL310
|
4.4
|
24.5
|
1.0
|
CE2
|
M:TYR209
|
4.5
|
15.8
|
1.0
|
ND1
|
L:HIS154
|
4.5
|
36.8
|
1.0
|
CG
|
L:HIS154
|
4.5
|
28.7
|
1.0
|
CBA
|
L:BCL310
|
4.6
|
27.6
|
1.0
|
C20
|
L:BPH302
|
4.8
|
25.6
|
1.0
|
CBD
|
L:BCL310
|
4.9
|
21.8
|
1.0
|
CBC
|
L:BCL310
|
4.9
|
28.0
|
1.0
|
|
Magnesium binding site 3 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 3 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg403
b:29.1
occ:1.00
|
MG
|
M:BCL403
|
0.0
|
29.1
|
1.0
|
NA
|
M:BCL403
|
2.0
|
41.5
|
1.0
|
NC
|
M:BCL403
|
2.0
|
35.5
|
1.0
|
ND
|
M:BCL403
|
2.0
|
33.2
|
1.0
|
NB
|
M:BCL403
|
2.0
|
26.0
|
1.0
|
NE2
|
M:HIS181
|
2.4
|
24.4
|
1.0
|
C4D
|
M:BCL403
|
2.9
|
26.2
|
1.0
|
C1A
|
M:BCL403
|
3.0
|
40.0
|
1.0
|
C4A
|
M:BCL403
|
3.0
|
35.4
|
1.0
|
C4C
|
M:BCL403
|
3.0
|
30.9
|
1.0
|
C1C
|
M:BCL403
|
3.0
|
35.3
|
1.0
|
C1B
|
M:BCL403
|
3.0
|
28.1
|
1.0
|
C4B
|
M:BCL403
|
3.1
|
27.7
|
1.0
|
C1D
|
M:BCL403
|
3.1
|
30.3
|
1.0
|
CD2
|
M:HIS181
|
3.3
|
24.9
|
1.0
|
CHB
|
M:BCL403
|
3.3
|
32.2
|
1.0
|
CHC
|
M:BCL403
|
3.4
|
35.5
|
1.0
|
CHA
|
M:BCL403
|
3.4
|
31.4
|
1.0
|
CE1
|
M:HIS181
|
3.5
|
27.8
|
1.0
|
CHD
|
M:BCL403
|
3.5
|
31.4
|
1.0
|
C3D
|
M:BCL403
|
4.2
|
30.2
|
1.0
|
C2A
|
M:BCL403
|
4.3
|
31.5
|
1.0
|
C3C
|
M:BCL403
|
4.3
|
36.6
|
1.0
|
C3A
|
M:BCL403
|
4.3
|
28.1
|
1.0
|
C2C
|
M:BCL403
|
4.3
|
34.5
|
1.0
|
C3B
|
M:BCL403
|
4.4
|
28.9
|
1.0
|
C2B
|
M:BCL403
|
4.4
|
30.7
|
1.0
|
C2D
|
M:BCL403
|
4.4
|
31.7
|
1.0
|
CG
|
M:HIS181
|
4.5
|
26.6
|
1.0
|
ND1
|
M:HIS181
|
4.5
|
32.7
|
1.0
|
OBB
|
M:BPH405
|
4.6
|
43.1
|
1.0
|
CBD
|
M:BCL403
|
4.9
|
29.0
|
1.0
|
|
Magnesium binding site 4 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 4 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg404
b:27.1
occ:1.00
|
MG
|
M:BCL404
|
0.0
|
27.1
|
1.0
|
NA
|
M:BCL404
|
2.0
|
27.8
|
1.0
|
NC
|
M:BCL404
|
2.0
|
30.2
|
1.0
|
ND
|
M:BCL404
|
2.0
|
19.8
|
1.0
|
NB
|
M:BCL404
|
2.0
|
18.4
|
1.0
|
NE2
|
M:HIS201
|
2.3
|
17.6
|
1.0
|
C4D
|
M:BCL404
|
2.9
|
15.2
|
1.0
|
C4A
|
M:BCL404
|
3.0
|
22.4
|
1.0
|
C1A
|
M:BCL404
|
3.0
|
27.2
|
1.0
|
C4C
|
M:BCL404
|
3.0
|
17.5
|
1.0
|
C1C
|
M:BCL404
|
3.0
|
24.2
|
1.0
|
C1B
|
M:BCL404
|
3.0
|
22.8
|
1.0
|
C4B
|
M:BCL404
|
3.1
|
13.2
|
1.0
|
CE1
|
M:HIS201
|
3.2
|
19.0
|
1.0
|
C1D
|
M:BCL404
|
3.2
|
20.0
|
1.0
|
CBB
|
L:BCL301
|
3.2
|
18.8
|
1.0
|
CHB
|
M:BCL404
|
3.3
|
15.2
|
1.0
|
CHC
|
M:BCL404
|
3.4
|
14.6
|
1.0
|
CHA
|
M:BCL404
|
3.4
|
18.1
|
1.0
|
CD2
|
M:HIS201
|
3.4
|
20.7
|
1.0
|
CHD
|
M:BCL404
|
3.5
|
15.9
|
1.0
|
CAB
|
L:BCL301
|
3.6
|
23.9
|
1.0
|
OBB
|
L:BCL301
|
4.0
|
32.9
|
1.0
|
C3D
|
M:BCL404
|
4.2
|
19.0
|
1.0
|
C3B
|
L:BCL301
|
4.3
|
21.0
|
1.0
|
C3A
|
M:BCL404
|
4.3
|
19.1
|
1.0
|
C2A
|
M:BCL404
|
4.3
|
22.1
|
1.0
|
C3C
|
M:BCL404
|
4.3
|
21.1
|
1.0
|
C2C
|
M:BCL404
|
4.3
|
15.7
|
1.0
|
ND1
|
M:HIS201
|
4.3
|
25.3
|
1.0
|
C3B
|
M:BCL404
|
4.4
|
16.9
|
1.0
|
C2B
|
M:BCL404
|
4.4
|
20.9
|
1.0
|
C2D
|
M:BCL404
|
4.4
|
21.0
|
1.0
|
CG
|
M:HIS201
|
4.5
|
22.5
|
1.0
|
CBD
|
M:BCL404
|
4.9
|
20.4
|
1.0
|
CD1
|
M:ILE205
|
4.9
|
18.9
|
1.0
|
C2B
|
L:BCL301
|
4.9
|
25.1
|
1.0
|
|
Magnesium binding site 5 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 5 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:69.8
occ:1.00
|
MG
|
A:BCL101
|
0.0
|
69.8
|
1.0
|
NC
|
A:BCL101
|
2.0
|
76.6
|
1.0
|
NA
|
A:BCL101
|
2.0
|
75.2
|
1.0
|
ND
|
A:BCL101
|
2.0
|
69.2
|
1.0
|
NB
|
A:BCL101
|
2.0
|
78.4
|
1.0
|
NE2
|
A:HIS32
|
2.5
|
43.6
|
1.0
|
C4D
|
A:BCL101
|
2.9
|
68.1
|
1.0
|
C1C
|
A:BCL101
|
2.9
|
75.2
|
1.0
|
C4A
|
A:BCL101
|
2.9
|
74.8
|
1.0
|
C1A
|
A:BCL101
|
3.0
|
73.5
|
1.0
|
C4C
|
A:BCL101
|
3.0
|
72.3
|
1.0
|
C1B
|
A:BCL101
|
3.0
|
75.7
|
1.0
|
C4B
|
A:BCL101
|
3.1
|
77.2
|
1.0
|
C1D
|
A:BCL101
|
3.2
|
69.1
|
1.0
|
CE1
|
A:HIS32
|
3.3
|
46.7
|
1.0
|
CHB
|
A:BCL101
|
3.3
|
73.4
|
1.0
|
CHC
|
A:BCL101
|
3.3
|
76.6
|
1.0
|
CHA
|
A:BCL101
|
3.4
|
68.7
|
1.0
|
CHD
|
A:BCL101
|
3.5
|
68.7
|
1.0
|
CD2
|
A:HIS32
|
3.6
|
48.7
|
1.0
|
C3D
|
A:BCL101
|
4.2
|
67.6
|
1.0
|
C2C
|
A:BCL101
|
4.2
|
70.9
|
1.0
|
CMD
|
B:BCL101
|
4.2
|
54.1
|
1.0
|
C3C
|
A:BCL101
|
4.2
|
71.6
|
1.0
|
C3A
|
A:BCL101
|
4.3
|
71.0
|
1.0
|
C2A
|
A:BCL101
|
4.3
|
71.0
|
1.0
|
C3B
|
A:BCL101
|
4.3
|
75.8
|
1.0
|
C2B
|
A:BCL101
|
4.4
|
74.1
|
1.0
|
C2D
|
A:BCL101
|
4.4
|
67.3
|
1.0
|
ND1
|
A:HIS32
|
4.5
|
54.6
|
1.0
|
CG
|
A:HIS32
|
4.6
|
45.2
|
1.0
|
CBD
|
A:BCL101
|
4.9
|
64.0
|
1.0
|
CMA
|
A:BCL101
|
4.9
|
70.0
|
1.0
|
|
Magnesium binding site 6 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 6 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg101
b:50.6
occ:1.00
|
MG
|
B:BCL101
|
0.0
|
50.6
|
1.0
|
NA
|
B:BCL101
|
2.0
|
48.3
|
1.0
|
NC
|
B:BCL101
|
2.0
|
49.6
|
1.0
|
ND
|
B:BCL101
|
2.0
|
44.2
|
1.0
|
NB
|
B:BCL101
|
2.0
|
45.9
|
1.0
|
NE2
|
B:HIS38
|
2.2
|
34.6
|
1.0
|
C4D
|
B:BCL101
|
2.9
|
43.9
|
1.0
|
C1A
|
B:BCL101
|
3.0
|
44.0
|
1.0
|
C4C
|
B:BCL101
|
3.0
|
47.0
|
1.0
|
C4A
|
B:BCL101
|
3.0
|
45.0
|
1.0
|
C1C
|
B:BCL101
|
3.0
|
44.7
|
1.0
|
CE1
|
B:HIS38
|
3.0
|
31.8
|
1.0
|
C1B
|
B:BCL101
|
3.1
|
44.2
|
1.0
|
C4B
|
B:BCL101
|
3.1
|
43.5
|
1.0
|
C1D
|
B:BCL101
|
3.1
|
43.5
|
1.0
|
CD2
|
B:HIS38
|
3.3
|
33.6
|
1.0
|
CHC
|
B:BCL101
|
3.4
|
48.1
|
1.0
|
CHB
|
B:BCL101
|
3.4
|
46.0
|
1.0
|
CHA
|
B:BCL101
|
3.4
|
45.5
|
1.0
|
CHD
|
B:BCL101
|
3.5
|
45.6
|
1.0
|
ND1
|
B:HIS38
|
4.2
|
35.3
|
1.0
|
C3D
|
B:BCL101
|
4.2
|
48.1
|
1.0
|
CMB
|
D:BCL102
|
4.2
|
35.2
|
1.0
|
C2A
|
B:BCL101
|
4.3
|
41.5
|
1.0
|
C3A
|
B:BCL101
|
4.3
|
44.4
|
1.0
|
C3C
|
B:BCL101
|
4.3
|
42.8
|
1.0
|
C2C
|
B:BCL101
|
4.3
|
42.8
|
1.0
|
CG
|
B:HIS38
|
4.3
|
39.2
|
1.0
|
C3B
|
B:BCL101
|
4.4
|
38.3
|
1.0
|
C2D
|
B:BCL101
|
4.4
|
48.2
|
1.0
|
C2B
|
B:BCL101
|
4.4
|
43.9
|
1.0
|
CBB
|
D:BCL102
|
4.4
|
40.0
|
1.0
|
C2B
|
D:BCL102
|
4.7
|
31.9
|
1.0
|
CAB
|
D:BCL102
|
4.8
|
42.8
|
1.0
|
CAA
|
B:BCL101
|
4.8
|
53.9
|
1.0
|
CD1
|
A:ILE31
|
4.9
|
44.2
|
1.0
|
CBD
|
B:BCL101
|
4.9
|
39.9
|
1.0
|
C3B
|
D:BCL102
|
5.0
|
37.0
|
1.0
|
|
Magnesium binding site 7 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 7 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg102
b:50.9
occ:1.00
|
MG
|
D:BCL102
|
0.0
|
50.9
|
1.0
|
NA
|
D:BCL102
|
2.0
|
41.9
|
1.0
|
NC
|
D:BCL102
|
2.0
|
43.2
|
1.0
|
ND
|
D:BCL102
|
2.0
|
43.2
|
1.0
|
NB
|
D:BCL102
|
2.0
|
38.3
|
1.0
|
NE2
|
D:HIS32
|
2.6
|
25.6
|
1.0
|
C4D
|
D:BCL102
|
2.9
|
36.8
|
1.0
|
C4A
|
D:BCL102
|
3.0
|
37.0
|
1.0
|
C1A
|
D:BCL102
|
3.0
|
38.6
|
1.0
|
C4C
|
D:BCL102
|
3.0
|
36.3
|
1.0
|
C1C
|
D:BCL102
|
3.0
|
39.2
|
1.0
|
C1B
|
D:BCL102
|
3.0
|
36.9
|
1.0
|
C4B
|
D:BCL102
|
3.1
|
33.2
|
1.0
|
C1D
|
D:BCL102
|
3.2
|
38.8
|
1.0
|
CHB
|
D:BCL102
|
3.3
|
38.3
|
1.0
|
CHA
|
D:BCL102
|
3.4
|
37.0
|
1.0
|
CHC
|
D:BCL102
|
3.4
|
34.8
|
1.0
|
CE1
|
D:HIS32
|
3.5
|
32.0
|
1.0
|
CHD
|
D:BCL102
|
3.5
|
34.8
|
1.0
|
CD2
|
D:HIS32
|
3.6
|
21.9
|
1.0
|
CBB
|
B:BCL101
|
3.9
|
54.5
|
1.0
|
CMB
|
B:BCL101
|
4.1
|
52.3
|
1.0
|
C3D
|
D:BCL102
|
4.2
|
37.6
|
1.0
|
C18
|
E:SPO101
|
4.3
|
60.5
|
1.0
|
C3A
|
D:BCL102
|
4.3
|
37.6
|
1.0
|
C2A
|
D:BCL102
|
4.3
|
35.8
|
1.0
|
C3C
|
D:BCL102
|
4.3
|
36.3
|
1.0
|
C2C
|
D:BCL102
|
4.3
|
42.1
|
1.0
|
C2B
|
D:BCL102
|
4.4
|
31.9
|
1.0
|
C3B
|
D:BCL102
|
4.4
|
37.0
|
1.0
|
C2D
|
D:BCL102
|
4.4
|
35.4
|
1.0
|
CMD
|
E:BCL102
|
4.5
|
40.2
|
1.0
|
ND1
|
D:HIS32
|
4.6
|
27.0
|
1.0
|
C20
|
E:SPO101
|
4.6
|
56.7
|
1.0
|
C2B
|
B:BCL101
|
4.7
|
43.9
|
1.0
|
CG
|
D:HIS32
|
4.8
|
26.7
|
1.0
|
CBD
|
D:BCL102
|
4.9
|
33.6
|
1.0
|
CAB
|
B:BCL101
|
4.9
|
48.4
|
1.0
|
|
Magnesium binding site 8 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 8 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg102
b:49.2
occ:1.00
|
MG
|
E:BCL102
|
0.0
|
49.2
|
1.0
|
NA
|
E:BCL102
|
2.0
|
43.9
|
1.0
|
NC
|
E:BCL102
|
2.0
|
46.5
|
1.0
|
ND
|
E:BCL102
|
2.0
|
42.7
|
1.0
|
NB
|
E:BCL102
|
2.0
|
45.2
|
1.0
|
NE2
|
E:HIS38
|
2.2
|
34.5
|
1.0
|
C4D
|
E:BCL102
|
2.9
|
36.7
|
1.0
|
C1A
|
E:BCL102
|
3.0
|
39.7
|
1.0
|
C4A
|
E:BCL102
|
3.0
|
44.1
|
1.0
|
C4C
|
E:BCL102
|
3.0
|
40.0
|
1.0
|
C1C
|
E:BCL102
|
3.0
|
37.6
|
1.0
|
C1B
|
E:BCL102
|
3.0
|
40.2
|
1.0
|
C4B
|
E:BCL102
|
3.1
|
42.6
|
1.0
|
C1D
|
E:BCL102
|
3.1
|
38.0
|
1.0
|
CD2
|
E:HIS38
|
3.2
|
34.2
|
1.0
|
CE1
|
E:HIS38
|
3.2
|
35.5
|
1.0
|
CHB
|
E:BCL102
|
3.4
|
39.4
|
1.0
|
CHC
|
E:BCL102
|
3.4
|
36.8
|
1.0
|
CHA
|
E:BCL102
|
3.4
|
33.4
|
1.0
|
CHD
|
E:BCL102
|
3.5
|
35.8
|
1.0
|
CMB
|
F:BCL103
|
4.2
|
32.9
|
1.0
|
C3D
|
E:BCL102
|
4.2
|
35.2
|
1.0
|
CBB
|
F:BCL103
|
4.2
|
32.8
|
1.0
|
C2A
|
E:BCL102
|
4.3
|
38.0
|
1.0
|
C3A
|
E:BCL102
|
4.3
|
39.3
|
1.0
|
C3C
|
E:BCL102
|
4.3
|
39.0
|
1.0
|
C2C
|
E:BCL102
|
4.3
|
39.3
|
1.0
|
ND1
|
E:HIS38
|
4.3
|
40.4
|
1.0
|
CG
|
E:HIS38
|
4.3
|
38.9
|
1.0
|
C3B
|
E:BCL102
|
4.4
|
42.4
|
1.0
|
C2B
|
E:BCL102
|
4.4
|
40.3
|
1.0
|
C2D
|
E:BCL102
|
4.4
|
30.1
|
1.0
|
CMD
|
D:BCL102
|
4.7
|
45.1
|
1.0
|
C2B
|
F:BCL103
|
4.7
|
30.9
|
1.0
|
CAB
|
F:BCL103
|
4.7
|
33.4
|
1.0
|
CBD
|
E:BCL102
|
4.9
|
28.9
|
1.0
|
C3B
|
F:BCL103
|
4.9
|
26.5
|
1.0
|
CG2
|
D:ILE31
|
4.9
|
26.0
|
1.0
|
CD1
|
D:ILE31
|
5.0
|
23.8
|
1.0
|
CAA
|
E:BCL102
|
5.0
|
41.9
|
1.0
|
|
Magnesium binding site 9 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 9 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg101
b:80.1
occ:1.00
|
MG
|
F:BCL101
|
0.0
|
80.1
|
1.0
|
NC
|
F:BCL101
|
2.0
|
82.7
|
1.0
|
NA
|
F:BCL101
|
2.0
|
80.8
|
1.0
|
ND
|
F:BCL101
|
2.0
|
77.1
|
1.0
|
NB
|
F:BCL101
|
2.0
|
84.0
|
1.0
|
O1
|
F:MYR102
|
2.7
|
72.0
|
1.0
|
C4D
|
F:BCL101
|
2.9
|
80.0
|
1.0
|
C4A
|
F:BCL101
|
3.0
|
81.2
|
1.0
|
C1A
|
F:BCL101
|
3.0
|
80.9
|
1.0
|
C4C
|
F:BCL101
|
3.0
|
84.3
|
1.0
|
C1C
|
F:BCL101
|
3.0
|
81.8
|
1.0
|
C1B
|
F:BCL101
|
3.0
|
82.0
|
1.0
|
C4B
|
F:BCL101
|
3.1
|
83.4
|
1.0
|
C1D
|
F:BCL101
|
3.2
|
79.0
|
1.0
|
CHB
|
F:BCL101
|
3.3
|
80.2
|
1.0
|
CHC
|
F:BCL101
|
3.3
|
81.7
|
1.0
|
CHA
|
F:BCL101
|
3.4
|
80.0
|
1.0
|
CHD
|
F:BCL101
|
3.5
|
80.5
|
1.0
|
C1
|
F:MYR102
|
3.8
|
73.8
|
1.0
|
NH2
|
F:ARG15
|
3.9
|
69.1
|
1.0
|
C3D
|
F:BCL101
|
4.2
|
82.4
|
1.0
|
C3C
|
F:BCL101
|
4.3
|
86.0
|
1.0
|
C2A
|
F:BCL101
|
4.3
|
80.8
|
1.0
|
C2C
|
F:BCL101
|
4.3
|
82.3
|
1.0
|
C3A
|
F:BCL101
|
4.3
|
82.4
|
1.0
|
C3B
|
F:BCL101
|
4.4
|
82.5
|
1.0
|
C2B
|
F:BCL101
|
4.4
|
81.3
|
1.0
|
C2D
|
F:BCL101
|
4.4
|
80.5
|
1.0
|
C2
|
F:MYR102
|
4.4
|
74.0
|
1.0
|
CB
|
F:ALA19
|
4.5
|
61.9
|
1.0
|
CG2
|
I:VAL22
|
4.6
|
40.5
|
1.0
|
CG1
|
I:VAL18
|
4.6
|
46.6
|
1.0
|
O2
|
F:MYR102
|
4.8
|
78.0
|
1.0
|
CZ
|
F:ARG15
|
4.8
|
70.8
|
1.0
|
CBD
|
F:BCL101
|
4.9
|
80.0
|
1.0
|
|
Magnesium binding site 10 out
of 25 in 7yml
Go back to
Magnesium Binding Sites List in 7yml
Magnesium binding site 10 out
of 25 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Capsulatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg103
b:41.6
occ:1.00
|
MG
|
F:BCL103
|
0.0
|
41.6
|
1.0
|
NA
|
F:BCL103
|
2.0
|
41.7
|
1.0
|
NC
|
F:BCL103
|
2.0
|
33.5
|
1.0
|
ND
|
F:BCL103
|
2.0
|
38.8
|
1.0
|
NB
|
F:BCL103
|
2.0
|
37.5
|
1.0
|
NE2
|
F:HIS32
|
2.7
|
21.2
|
1.0
|
C4D
|
F:BCL103
|
2.9
|
35.7
|
1.0
|
C4A
|
F:BCL103
|
3.0
|
34.8
|
1.0
|
C1A
|
F:BCL103
|
3.0
|
33.6
|
1.0
|
C4C
|
F:BCL103
|
3.0
|
34.0
|
1.0
|
C1C
|
F:BCL103
|
3.0
|
30.1
|
1.0
|
C1B
|
F:BCL103
|
3.0
|
35.1
|
1.0
|
C4B
|
F:BCL103
|
3.1
|
29.9
|
1.0
|
C1D
|
F:BCL103
|
3.2
|
34.4
|
1.0
|
CHB
|
F:BCL103
|
3.3
|
31.4
|
1.0
|
CHC
|
F:BCL103
|
3.4
|
25.4
|
1.0
|
CHA
|
F:BCL103
|
3.4
|
31.0
|
1.0
|
CHD
|
F:BCL103
|
3.5
|
30.9
|
1.0
|
CE1
|
F:HIS32
|
3.6
|
24.7
|
1.0
|
CD2
|
F:HIS32
|
3.7
|
21.3
|
1.0
|
CBB
|
E:BCL102
|
4.0
|
49.2
|
1.0
|
C3D
|
F:BCL103
|
4.2
|
35.6
|
1.0
|
CMB
|
E:BCL102
|
4.2
|
43.8
|
1.0
|
C3A
|
F:BCL103
|
4.3
|
31.2
|
1.0
|
C2A
|
F:BCL103
|
4.3
|
31.9
|
1.0
|
C3C
|
F:BCL103
|
4.3
|
31.5
|
1.0
|
C2C
|
F:BCL103
|
4.3
|
34.5
|
1.0
|
C18
|
F:SPO104
|
4.4
|
54.6
|
1.0
|
C2B
|
F:BCL103
|
4.4
|
30.9
|
1.0
|
C3B
|
F:BCL103
|
4.4
|
26.5
|
1.0
|
C2D
|
F:BCL103
|
4.4
|
32.1
|
1.0
|
C20
|
F:SPO104
|
4.5
|
52.5
|
1.0
|
C2B
|
E:BCL102
|
4.7
|
40.3
|
1.0
|
ND1
|
F:HIS32
|
4.7
|
25.4
|
1.0
|
CMD
|
G:BCL101
|
4.8
|
35.8
|
1.0
|
CG
|
F:HIS32
|
4.8
|
26.7
|
1.0
|
CAB
|
E:BCL102
|
4.9
|
44.0
|
1.0
|
CBD
|
F:BCL103
|
4.9
|
29.4
|
1.0
|
|
Reference:
K.Tani,
R.Kanno,
X.-C.Ji,
I.Satoh,
Y.Kobayashi,
M.Hall,
L.-J.Yu,
Y.Kimura,
A.Mizoguchi,
B.M.Humbel,
M.T.Madigan,
Z.-Y.Wang-Otomo.
Rhodobacter Capsulatus Forms A Compact Crescent-Shaped LH1-Rc Photocomplex Nat Commun 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-36460-W
Page generated: Thu Oct 3 15:31:15 2024
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