Magnesium in PDB 7ynz: Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry

The structure of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry also contains other interesting chemical elements:

Calcium

(Ca)

8 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry (pdb code 7ynz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry, PDB code: 7ynz:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:20.0 occ:1.00 OE1 A:GLU374 2.6 20.0 1.0 OE1 A:GLU399 2.9 20.0 1.0 CD A:GLU399 3.2 20.0 1.0 CG A:GLU399 3.7 20.0 1.0 CD A:GLU374 3.8 20.0 1.0 OE2 A:GLU399 3.9 20.0 1.0 ND2 G:ASN172 4.4 20.0 1.0 OE2 A:GLU374 4.4 20.0 1.0 O A:VAL398 4.5 20.0 1.0 O A:THR396 4.5 20.0 1.0 O A:PHE395 4.5 20.0 1.0 CG A:GLU374 4.8 20.0 1.0 C A:THR396 4.8 20.0 1.0 CA A:THR396 5.0 20.0 1.0 CB A:GLU399 5.0 20.0 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1101 b:20.0 occ:1.00 OE2 C:GLU399 2.0 20.0 1.0 OE2 C:GLU374 2.6 20.0 1.0 CD C:GLU399 3.1 20.0 1.0 CD C:GLU374 3.7 20.0 1.0 CG C:GLU399 3.8 20.0 1.0 OE1 C:GLU399 4.0 20.0 1.0 OE1 C:GLU374 4.1 20.0 1.0 ND2 A:ASN172 4.3 20.0 1.0 NZ A:LYS98 4.6 20.0 1.0 CG C:GLU374 4.8 20.0 1.0 O C:THR396 5.0 20.0 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1101 b:20.0 occ:1.00 NH1 E:ARG342 2.1 20.0 1.0 CD E:ARG342 2.4 20.0 1.0 CZ E:ARG342 2.5 20.0 1.0 NE E:ARG342 2.5 20.0 1.0 CG E:ARG342 3.1 20.0 1.0 O E:ASN372 3.3 20.0 1.0 NH2 E:ARG342 3.6 20.0 1.0 CB E:ARG342 3.9 20.0 1.0 CB E:ASN372 4.3 20.0 1.0 OD2 C:ASP99 4.3 20.0 1.0 C E:ASN372 4.3 20.0 1.0 CB E:GLU374 4.4 20.0 1.0 OE2 E:GLU374 4.5 20.0 1.0 CA E:ASN372 4.7 20.0 1.0 CA E:ARG342 5.0 20.0 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1101 b:20.0 occ:1.00 OE2 G:GLU399 2.8 20.0 1.0 OE2 G:GLU374 3.4 20.0 1.0 CD G:GLU399 3.6 20.0 1.0 CG G:GLU399 3.7 20.0 1.0 CD G:GLU374 3.8 20.0 1.0 OE1 G:GLU374 4.0 20.0 1.0 O G:THR396 4.2 20.0 1.0 ND2 E:ASN172 4.5 20.0 1.0 OD1 E:ASN172 4.5 20.0 1.0 O G:PHE395 4.7 20.0 1.0 CG G:GLU374 4.8 20.0 1.0 OE1 G:GLU399 4.8 20.0 1.0 O G:VAL398 4.8 20.0 1.0 C G:THR396 4.8 20.0 1.0 CA G:THR396 4.9 20.0 1.0 CG E:ASN172 5.0 20.0 1.0

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.