Magnesium in PDB 7yp9: Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause)

Enzymatic activity of Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause)

All present enzymatic activity of Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause):
2.7.7.6;

Other elements in 7yp9:

The structure of Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause) (pdb code 7yp9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause), PDB code: 7yp9:

Magnesium binding site 1 out of 1 in 7yp9

Go back to Magnesium Binding Sites List in 7yp9
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg101

b:20.2
occ:1.00
 C3' H:U0 2.8 16.3 1.0
O3' H:U0 3.2 16.3 1.0
O D:ASP460 3.5 14.4 1.0
CB D:ASP462 3.5 14.2 1.0
C4' H:U0 3.6 16.3 1.0
C5' H:U0 3.6 16.3 1.0
CB D:ASP464 3.8 15.8 1.0
CG D:ASP464 3.9 15.8 1.0
OD1 D:ASP462 3.9 14.2 1.0
OD2 D:ASP464 3.9 15.8 1.0
C2' H:U0 4.0 16.3 1.0
N D:ASP462 4.2 14.2 1.0
N D:ASP460 4.2 14.4 1.0
CG D:ASP462 4.2 14.2 1.0
C D:ASP460 4.3 14.4 1.0
CA D:ASP462 4.3 14.2 1.0
O5' H:U0 4.3 16.3 1.0
OD1 D:ASP464 4.4 15.8 1.0
O2' H:U0 4.5 16.3 1.0
NH1 D:ARG425 4.6 11.6 1.0
C D:ASP462 4.7 14.2 1.0
CA D:ASP460 4.7 14.4 1.0
N D:ASP464 4.8 15.8 1.0
NH2 D:ARG425 4.8 11.6 1.0
CA D:ASP464 4.8 15.8 1.0
C D:ALA459 4.8 13.1 1.0
O D:ASP462 4.9 14.2 1.0
O4' H:U0 4.9 16.3 1.0
OP1 H:U0 4.9 16.3 1.0
CB D:ASP460 4.9 14.4 1.0
CA D:ALA459 5.0 13.1 1.0

Reference:

L.L.You, Y.Zhang. Cryo-Em Structure of Escherichia Coli Paused Complex of Transcription Termination (Ttc-Pause) To Be Published.
Page generated: Fri Apr 7 03:03:06 2023

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