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Magnesium in PDB 7ypb: Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release)

Enzymatic activity of Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release)

All present enzymatic activity of Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release):
2.7.7.6;

Other elements in 7ypb:

The structure of Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) (pdb code 7ypb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release), PDB code: 7ypb:

Magnesium binding site 1 out of 1 in 7ypb

Go back to Magnesium Binding Sites List in 7ypb
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1503

b:9.7
occ:1.00
 OD1 D:ASP464 2.2 8.0 1.0
OD2 D:ASP464 2.2 8.0 1.0
OD1 D:ASP462 2.3 6.0 1.0
OD1 D:ASP460 2.3 8.8 1.0
CG D:ASP464 2.5 8.0 1.0
CG D:ASP462 3.2 6.0 1.0
CG D:ASP460 3.3 8.8 1.0
OD2 D:ASP462 3.4 6.0 1.0
OD2 D:ASP460 3.6 8.8 1.0
O D:ASP460 3.9 8.8 1.0
CB D:ASP464 4.0 8.0 1.0
N D:ASP460 4.5 8.8 1.0
C D:ASP460 4.5 8.8 1.0
CB D:ASP460 4.5 8.8 1.0
CB D:ASP462 4.6 6.0 1.0
O D:ASP462 4.7 6.0 1.0
NH2 D:ARG425 4.7 22.8 1.0
N D:ASP462 4.7 6.0 1.0
CA D:ASP460 4.7 8.8 1.0
CA D:ASP464 4.8 8.0 1.0
N D:ASP464 4.8 8.0 1.0
C D:ASP462 4.9 6.0 1.0
CA D:ASP462 5.0 6.0 1.0

Reference:

L.L.You, Y.Zhang. Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) To Be Published.
Page generated: Thu Oct 3 15:34:04 2024

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