Magnesium in PDB 7yzp: Hairpin-Bound State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and A Dna Hairpin

The structure of Hairpin-Bound State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and A Dna Hairpin also contains other interesting chemical elements:

Manganese

(Mn)

4 atoms

The binding sites of Magnesium atom in the Hairpin-Bound State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and A Dna Hairpin (pdb code 7yzp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Hairpin-Bound State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and A Dna Hairpin, PDB code: 7yzp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Hairpin-Bound State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and A Dna Hairpin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hairpin-Bound State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and A Dna Hairpin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1102 b:35.5 occ:1.00 OG1 C:THR44 2.1 34.7 1.0 O3B C:ADP1101 2.1 37.5 1.0 NE2 C:GLN155 2.2 43.4 1.0 OE1 C:GLN155 2.2 43.4 1.0 CD C:GLN155 2.4 43.4 1.0 O2B C:ADP1101 2.4 37.5 1.0 PB C:ADP1101 2.7 37.5 1.0 CB C:THR44 3.5 34.7 1.0 O3A C:ADP1101 3.6 37.5 1.0 CG C:GLN155 3.7 43.4 1.0 OD2 C:ASP983 3.9 40.3 1.0 O1B C:ADP1101 4.0 37.5 1.0 CG2 C:THR44 4.1 34.7 1.0 N C:THR44 4.4 34.7 1.0 OD1 C:ASP983 4.4 40.3 1.0 CA C:THR44 4.5 34.7 1.0 CB C:GLN155 4.5 43.4 1.0 CG C:ASP983 4.6 40.3 1.0 PA C:ADP1101 4.8 37.5 1.0 O2A C:ADP1101 4.8 37.5 1.0 CE C:LYS43 4.9 38.5 1.0

Magnesium binding site 2 out of 2 in the Hairpin-Bound State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and A Dna Hairpin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Hairpin-Bound State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and A Dna Hairpin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1102 b:29.2 occ:1.00 O2B D:ADP1101 2.3 44.9 1.0 OG1 D:THR44 2.4 40.8 1.0 O1B D:ADP1101 3.0 44.9 1.0 PB D:ADP1101 3.0 44.9 1.0 OD2 D:ASP983 3.1 53.9 1.0 O3B D:ADP1101 3.7 44.9 1.0 CB D:THR44 3.8 40.8 1.0 CG D:ASP983 4.0 53.9 1.0 OD1 D:ASP983 4.0 53.9 1.0 CG D:GLN155 4.3 61.0 1.0 O3A D:ADP1101 4.4 44.9 1.0 CG2 D:THR44 4.6 40.8 1.0 CE D:LYS43 4.6 44.0 1.0 N D:THR44 4.6 40.8 1.0 CA D:THR44 4.7 40.8 1.0 NZ D:LYS43 4.9 44.0 1.0 CD D:GLN155 5.0 61.0 1.0

F.Gut, L.Kashammer, K.Lammens, J.D.Bartho, A.M.Boggusch, E.Van De Logt, B.Kessler, K.P.Hopfner. Structural Mechanism of Endonucleolytic Processing of Blocked Dna Ends and Hairpins By MRE11-RAD50. Mol.Cell V. 82 3513 2022.
ISSN: ISSN 1097-2765
PubMed: 35987200
DOI: 10.1016/J.MOLCEL.2022.07.019