Atomistry » Magnesium » PDB 7yua-7z1n » 7z02
Atomistry »
  Magnesium »
    PDB 7yua-7z1n »
      7z02 »

Magnesium in PDB 7z02: Z-SBTUB2M Photoswitch Bound to Tubulin-Darpin D1 Complex

Protein crystallography data

The structure of Z-SBTUB2M Photoswitch Bound to Tubulin-Darpin D1 Complex, PDB code: 7z02 was solved by M.Wranik, T.Weinert, J.Standfuss, M.Steinmetz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.81 / 2.36
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.683, 91.615, 83.11, 90, 97.39, 90
R / Rfree (%) 20.5 / 25.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Z-SBTUB2M Photoswitch Bound to Tubulin-Darpin D1 Complex (pdb code 7z02). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Z-SBTUB2M Photoswitch Bound to Tubulin-Darpin D1 Complex, PDB code: 7z02:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7z02

Go back to Magnesium Binding Sites List in 7z02
Magnesium binding site 1 out of 2 in the Z-SBTUB2M Photoswitch Bound to Tubulin-Darpin D1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Z-SBTUB2M Photoswitch Bound to Tubulin-Darpin D1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:40.9
occ:1.00
MG A:MG503 2.1 28.8 1.0
O1G A:GTP501 2.4 32.0 1.0
O2B A:GTP501 2.6 33.9 1.0
HB2 A:GLN11 3.2 67.1 1.0
HZ1 B:LYS254 3.2 61.9 1.0
O B:HOH603 3.3 39.9 1.0
OE2 A:GLU71 3.3 55.9 1.0
O3A A:GTP501 3.5 33.6 1.0
PB A:GTP501 3.5 33.1 1.0
PG A:GTP501 3.6 35.5 1.0
HB3 A:GLN11 3.6 58.6 1.0
OE1 A:GLN11 3.7 31.4 1.0
CB A:GLN11 3.8 32.2 1.0
O3G A:GTP501 4.0 34.1 1.0
H A:GLN11 4.0 71.3 1.0
NZ B:LYS254 4.1 42.4 1.0
O3B A:GTP501 4.1 32.3 1.0
HZ2 B:LYS254 4.1 60.6 1.0
O2A A:GTP501 4.2 32.2 1.0
HG2 A:GLU71 4.3 69.9 1.0
CD A:GLU71 4.3 53.1 1.0
CD A:GLN11 4.3 33.8 1.0
PA A:GTP501 4.4 34.7 1.0
HZ3 B:LYS254 4.5 74.0 1.0
CG A:GLN11 4.7 31.0 1.0
N A:GLN11 4.8 30.6 1.0
HE3 B:LYS254 4.8 67.9 1.0
HG21 A:VAL74 4.8 72.0 1.0
O1B A:GTP501 4.8 31.1 1.0
O2G A:GTP501 4.8 33.7 1.0
CG A:GLU71 4.9 51.2 1.0
CA A:GLN11 4.9 33.4 1.0
CE B:LYS254 4.9 46.5 1.0
HB2 A:ASP98 4.9 77.0 1.0
HE2 B:LYS254 5.0 64.0 1.0

Magnesium binding site 2 out of 2 in 7z02

Go back to Magnesium Binding Sites List in 7z02
Magnesium binding site 2 out of 2 in the Z-SBTUB2M Photoswitch Bound to Tubulin-Darpin D1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Z-SBTUB2M Photoswitch Bound to Tubulin-Darpin D1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:28.8
occ:1.00
MG A:MG502 2.1 40.9 1.0
O2B A:GTP501 2.3 33.9 1.0
O1G A:GTP501 2.3 32.0 1.0
HG2 A:GLU71 2.6 69.9 1.0
OE2 A:GLU71 3.0 55.9 1.0
OD1 A:ASP69 3.2 47.2 1.0
OD2 A:ASP69 3.4 50.7 1.0
HB2 A:GLN11 3.4 67.1 1.0
CG A:GLU71 3.5 51.2 1.0
CD A:GLU71 3.6 53.1 1.0
H A:GLN11 3.6 71.3 1.0
PB A:GTP501 3.6 33.1 1.0
PG A:GTP501 3.7 35.5 1.0
CG A:ASP69 3.7 47.7 1.0
HG3 A:GLU71 4.0 71.0 1.0
HB2 A:ASP98 4.0 77.0 1.0
O3B A:GTP501 4.0 32.3 1.0
HB3 A:ASP98 4.1 70.5 1.0
CB A:GLN11 4.2 32.2 1.0
N A:GLN11 4.2 30.6 1.0
HB3 A:GLN11 4.3 58.6 1.0
H A:GLU71 4.3 63.4 1.0
HB3 A:GLU71 4.4 59.6 1.0
HA2 A:GLY10 4.4 62.0 1.0
O3A A:GTP501 4.4 33.6 1.0
HG1 A:THR145 4.5 61.7 1.0
O2G A:GTP501 4.5 33.7 1.0
CB A:ASP98 4.5 44.4 1.0
CB A:GLU71 4.5 54.4 1.0
HG21 A:VAL74 4.6 72.0 1.0
OE1 A:GLU71 4.7 50.5 1.0
O3G A:GTP501 4.7 34.1 1.0
O1B A:GTP501 4.7 31.1 1.0
O B:HOH603 4.7 39.9 1.0
OG1 A:THR145 4.7 33.6 1.0
CA A:GLN11 4.8 33.4 1.0
HG23 A:VAL74 4.8 68.0 1.0
H A:LEU70 4.8 64.9 1.0
HB A:THR145 4.8 69.9 1.0
HZ1 B:LYS254 4.8 61.9 1.0
HA A:GLN11 4.9 65.9 1.0
OE1 A:GLN11 4.9 31.4 1.0
N A:GLU71 5.0 55.1 1.0

Reference:

L.Gao, J.C.M.Meiring, A.Varady, I.E.Ruider, C.Heise, M.Wranik, C.D.Velasco, J.A.Taylor, B.Terni, T.Weinert, J.Standfuss, C.C.Cabernard, A.Llobet, M.O.Steinmetz, A.R.Bausch, M.Distel, J.Thorn-Seshold, A.Akhmanova, O.Thorn-Seshold. In Vivo Photocontrol of Microtubule Dynamics and Integrity, Migration and Mitosis, By the Potent Gfp-Imaging-Compatible Photoswitchable Reagents SBTUBA4P and SBTUB2M. J.Am.Chem.Soc. V. 144 5614 2022.
ISSN: ESSN 1520-5126
PubMed: 35290733
DOI: 10.1021/JACS.2C01020
Page generated: Thu Oct 3 16:11:44 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy