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Magnesium in PDB 7z18: E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp

Enzymatic activity of E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp

All present enzymatic activity of E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp:
2.7.8.37; 4.7.1.1;

Other elements in 7z18:

The structure of E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp (pdb code 7z18). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp, PDB code: 7z18:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7z18

Go back to Magnesium Binding Sites List in 7z18
Magnesium binding site 1 out of 2 in the E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg1001

b:33.9
occ:1.00
OG1 I:THR45 1.9 42.0 1.0
HG1 I:THR45 2.2 42.0 1.0
OE1 I:GLN90 2.3 41.5 1.0
O2G I:ATP1000 2.3 44.4 1.0
O2B I:ATP1000 2.4 44.4 1.0
O I:HOH1101 2.8 39.0 1.0
O3B I:ATP1000 3.0 44.4 1.0
H2 I:HOH1101 3.0 39.0 1.0
PG I:ATP1000 3.1 44.4 1.0
H1 I:HOH1101 3.2 39.0 1.0
CD I:GLN90 3.2 41.5 1.0
HE22 I:GLN90 3.3 41.5 1.0
CB I:THR45 3.3 42.0 1.0
PB I:ATP1000 3.3 44.4 1.0
HB I:THR45 3.4 42.0 1.0
O1G I:ATP1000 3.6 44.4 1.0
NE2 I:GLN90 3.6 41.5 1.0
H I:THR45 3.7 42.0 1.0
HB2 J:SER147 3.7 40.7 1.0
OD2 I:ASP170 3.8 43.2 1.0
HG21 I:THR45 3.8 42.0 1.0
H J:GLY148 3.9 39.9 1.0
O1A I:ATP1000 4.0 44.4 1.0
CG2 I:THR45 4.1 42.0 1.0
O3A I:ATP1000 4.1 44.4 1.0
OD1 I:ASP170 4.2 43.2 1.0
N I:THR45 4.2 42.0 1.0
CA I:THR45 4.2 42.0 1.0
CG I:ASP170 4.3 43.2 1.0
HG23 I:THR45 4.4 42.0 1.0
HA I:THR45 4.4 42.0 1.0
HE21 I:GLN90 4.4 41.5 1.0
O1B I:ATP1000 4.4 44.4 1.0
O3G I:ATP1000 4.4 44.4 1.0
HB2 I:LYS44 4.5 44.5 1.0
HB2 I:GLN90 4.5 41.5 1.0
CG I:GLN90 4.5 41.5 1.0
PA I:ATP1000 4.6 44.4 1.0
CB J:SER147 4.6 40.7 1.0
HE2 I:LYS44 4.7 44.5 1.0
N J:GLY148 4.7 39.9 1.0
HG3 I:GLN90 4.7 41.5 1.0
HG11 I:VAL202 4.8 43.9 1.0
HB3 J:SER147 4.8 40.7 1.0
H J:GLY149 4.9 40.6 1.0
HG3 I:GLU171 4.9 44.3 1.0
HG22 I:THR45 4.9 42.0 1.0
CB I:GLN90 5.0 41.5 1.0
HA3 J:GLY148 5.0 39.9 1.0

Magnesium binding site 2 out of 2 in 7z18

Go back to Magnesium Binding Sites List in 7z18
Magnesium binding site 2 out of 2 in the E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of E. Coli C-P Lyase Bound to A Phnk Abc Dimer and Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1001

b:34.5
occ:1.00
OG1 J:THR45 1.9 42.1 1.0
HG1 J:THR45 2.2 42.1 1.0
OE1 J:GLN90 2.3 41.6 1.0
O2G J:ATP1000 2.3 44.5 1.0
O2B J:ATP1000 2.3 44.5 1.0
O J:HOH1101 2.8 39.0 1.0
H2 J:HOH1101 2.9 39.0 1.0
O3B J:ATP1000 3.0 44.5 1.0
PG J:ATP1000 3.1 44.5 1.0
H1 J:HOH1101 3.2 39.0 1.0
CD J:GLN90 3.2 41.6 1.0
HE22 J:GLN90 3.3 41.6 1.0
CB J:THR45 3.3 42.1 1.0
PB J:ATP1000 3.3 44.5 1.0
HB J:THR45 3.4 42.1 1.0
O1G J:ATP1000 3.6 44.5 1.0
NE2 J:GLN90 3.6 41.6 1.0
H J:THR45 3.7 42.1 1.0
HB2 I:SER147 3.7 40.9 1.0
OD2 J:ASP170 3.8 43.4 1.0
HG21 J:THR45 3.8 42.1 1.0
H I:GLY148 3.9 40.1 1.0
O1A J:ATP1000 4.0 44.5 1.0
CG2 J:THR45 4.1 42.1 1.0
O3A J:ATP1000 4.1 44.5 1.0
OD1 J:ASP170 4.2 43.4 1.0
N J:THR45 4.2 42.1 1.0
CA J:THR45 4.3 42.1 1.0
CG J:ASP170 4.3 43.4 1.0
HG23 J:THR45 4.4 42.1 1.0
HA J:THR45 4.4 42.1 1.0
HE21 J:GLN90 4.4 41.6 1.0
O1B J:ATP1000 4.4 44.5 1.0
O3G J:ATP1000 4.4 44.5 1.0
HB2 J:LYS44 4.5 44.5 1.0
HB2 J:GLN90 4.5 41.6 1.0
CG J:GLN90 4.5 41.6 1.0
PA J:ATP1000 4.6 44.5 1.0
CB I:SER147 4.6 40.9 1.0
HE2 J:LYS44 4.7 44.5 1.0
N I:GLY148 4.7 40.1 1.0
HG3 J:GLN90 4.7 41.6 1.0
HG11 J:VAL202 4.8 43.9 1.0
HB3 I:SER147 4.8 40.9 1.0
H I:GLY149 4.9 40.8 1.0
HG3 J:GLU171 4.9 44.3 1.0
HG22 J:THR45 4.9 42.1 1.0
CB J:GLN90 5.0 41.6 1.0
HA3 I:GLY148 5.0 40.1 1.0

Reference:

S.K.Amstrup, N.Sofos, J.L.Karlsen, R.B.Skjerning, T.Boesen, J.J.Enghild, B.Hove-Jensen, D.E.Brodersen. Structural Remodelling of the Carbon-Phosphorus Lyase Machinery By A Dual Abc Atpase Biorxiv 2022.
ISSN: ISSN 2692-8205
DOI: 10.1101/2022.06.09.495270
Page generated: Thu Oct 3 16:13:37 2024

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