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Magnesium in PDB 7z67: Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog.

Enzymatic activity of Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog.

All present enzymatic activity of Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog.:
3.6.1.1;

Protein crystallography data

The structure of Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog., PDB code: 7z67 was solved by M.Hothorn, J.Martinez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.69 / 2.65
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.37, 93.37, 266.327, 90, 90, 120
R / Rfree (%) 21.9 / 24.5

Other elements in 7z67:

The structure of Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog. also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog. (pdb code 7z67). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog., PDB code: 7z67:

Magnesium binding site 1 out of 1 in 7z67

Go back to Magnesium Binding Sites List in 7z67
Magnesium binding site 1 out of 1 in the Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Tandem Kinase & Triphosphate Tunnel Metalloenzyme Domain Module of the TTM1 Protein From Arabidoposis Thaliana in Complex with A Adenosine Nucleotide Analog. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg504

b:161.7
occ:1.00
 N A:ILE405 2.7 86.9 1.0
OH A:TYR283 2.7 87.8 1.0
O3 A:CIT501 2.9 84.0 1.0
N A:TYR404 3.2 86.2 1.0
CG2 A:ILE405 3.3 77.9 1.0
NH2 A:ARG299 3.3 81.9 1.0
CB A:ILE405 3.4 85.4 1.0
CB A:TYR404 3.5 88.6 1.0
CZ A:TYR283 3.5 77.3 1.0
C A:TYR404 3.5 87.1 1.0
CA A:TYR404 3.5 94.3 1.0
CA A:ILE405 3.6 88.6 1.0
CE2 A:TYR283 3.6 77.8 1.0
CB A:THR403 3.7 73.7 1.0
C A:THR403 3.9 90.0 1.0
CZ A:ARG299 4.0 74.6 1.0
C5 A:CIT501 4.0 83.5 1.0
OG1 A:THR403 4.2 86.3 1.0
O4 A:CIT501 4.3 90.8 1.0
CA A:THR403 4.3 86.1 1.0
NH1 A:ARG299 4.4 79.8 1.0
O7 A:CIT501 4.4 93.8 1.0
CG A:TYR404 4.6 86.8 1.0
O A:TYR404 4.7 88.8 1.0
CE1 A:TYR283 4.7 71.7 1.0
NE A:ARG299 4.7 71.6 1.0
CG2 A:THR403 4.7 74.1 1.0
C A:ILE405 4.7 100.9 1.0
O A:THR403 4.8 93.8 1.0
CD2 A:TYR404 4.8 90.1 1.0
N A:GLU406 4.8 100.0 1.0
CG1 A:ILE405 4.8 82.4 1.0
CD2 A:TYR283 4.9 77.5 1.0
CD2 A:LEU349 4.9 90.2 1.0

Reference:

M.Pesquera, J.Martinez, K.Wang, M.Hofmann, S.Loubery, P.Steensma, M.Hothorn, T.B.Fitzpatrick. Structural and Biological Insight Into the Plant Unique Multimodular Triphosphosphate Tunnel Metalloenzymes of Arabidopsis Thaliana To Be Published.
Page generated: Thu Oct 3 16:16:25 2024

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