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Magnesium in PDB 7z6f: Crystal Structure of the Substrate-Binding Protein Yeja in Complex with Peptide Fragment

Protein crystallography data

The structure of Crystal Structure of the Substrate-Binding Protein Yeja in Complex with Peptide Fragment, PDB code: 7z6f was solved by K.Beis, F.Qu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.19 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.531, 76.972, 103.817, 90, 90, 90
R / Rfree (%) 18.9 / 23.3

Other elements in 7z6f:

The structure of Crystal Structure of the Substrate-Binding Protein Yeja in Complex with Peptide Fragment also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Substrate-Binding Protein Yeja in Complex with Peptide Fragment (pdb code 7z6f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Substrate-Binding Protein Yeja in Complex with Peptide Fragment, PDB code: 7z6f:

Magnesium binding site 1 out of 1 in 7z6f

Go back to Magnesium Binding Sites List in 7z6f
Magnesium binding site 1 out of 1 in the Crystal Structure of the Substrate-Binding Protein Yeja in Complex with Peptide Fragment


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Substrate-Binding Protein Yeja in Complex with Peptide Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg706

b:11.7
occ:1.00
O E:HOH833 3.0 27.4 1.0
O E:HOH1116 3.1 12.1 1.0
ND2 E:ASN506 3.4 12.8 1.0
O E:HOH1249 3.8 26.8 1.0
CB E:PRO149 3.8 14.8 1.0
CB E:ASN506 3.9 12.9 1.0
O E:HOH837 4.1 33.2 1.0
CG E:ASN506 4.2 16.1 1.0
NH2 E:ARG152 4.4 28.2 0.4
CD1 E:LEU153 4.5 28.8 1.0
CG E:PRO149 4.6 19.5 1.0
O E:HOH826 4.7 32.8 1.0
NH1 E:ARG152 4.9 14.1 0.4
CA E:ASN506 5.0 12.8 1.0

Reference:

K.Beis, F.Qu. Crystal Structure of the Substrate-Binding Protein Yeja in Complex with Peptide Fragment To Be Published.
Page generated: Thu Dec 28 07:57:41 2023

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