Magnesium in PDB 7z6q: Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Other elements in 7z6q:
The structure of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 1 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg801
b:32.5
occ:1.00
|
MG
|
A:GS0801
|
0.0
|
32.5
|
1.0
|
NA
|
A:GS0801
|
1.9
|
32.5
|
1.0
|
ND
|
A:GS0801
|
1.9
|
32.5
|
1.0
|
NB
|
A:GS0801
|
1.9
|
32.5
|
1.0
|
NC
|
A:GS0801
|
2.2
|
32.5
|
1.0
|
NE2
|
A:HIS621
|
2.6
|
28.0
|
1.0
|
C4D
|
A:GS0801
|
2.8
|
32.5
|
1.0
|
C1B
|
A:GS0801
|
2.8
|
32.5
|
1.0
|
C4A
|
A:GS0801
|
2.9
|
32.5
|
1.0
|
OBB
|
a:GS0801
|
2.9
|
32.5
|
1.0
|
C1A
|
A:GS0801
|
3.0
|
32.5
|
1.0
|
C4B
|
A:GS0801
|
3.0
|
32.5
|
1.0
|
C1D
|
A:GS0801
|
3.1
|
32.5
|
1.0
|
C1C
|
A:GS0801
|
3.1
|
32.5
|
1.0
|
CHB
|
A:GS0801
|
3.2
|
32.5
|
1.0
|
C4C
|
A:GS0801
|
3.2
|
32.5
|
1.0
|
CHA
|
A:GS0801
|
3.2
|
32.5
|
1.0
|
CHC
|
A:GS0801
|
3.5
|
32.5
|
1.0
|
CD2
|
A:HIS621
|
3.5
|
28.0
|
1.0
|
CHD
|
A:GS0801
|
3.6
|
32.5
|
1.0
|
CE1
|
A:HIS621
|
3.6
|
28.0
|
1.0
|
CAB
|
a:GS0801
|
3.6
|
32.5
|
1.0
|
C3B
|
a:GS0801
|
3.9
|
32.5
|
1.0
|
C3D
|
A:GS0801
|
4.0
|
32.5
|
1.0
|
C2B
|
A:GS0801
|
4.0
|
32.5
|
1.0
|
C3B
|
A:GS0801
|
4.1
|
32.5
|
1.0
|
C3A
|
A:GS0801
|
4.2
|
32.5
|
1.0
|
C4B
|
a:GS0801
|
4.2
|
32.5
|
1.0
|
C2D
|
A:GS0801
|
4.2
|
32.5
|
1.0
|
C2A
|
A:GS0801
|
4.3
|
32.5
|
1.0
|
CHC
|
a:GS0801
|
4.4
|
32.5
|
1.0
|
C2C
|
A:GS0801
|
4.5
|
32.5
|
1.0
|
C2B
|
a:GS0801
|
4.6
|
32.5
|
1.0
|
C3C
|
A:GS0801
|
4.6
|
32.5
|
1.0
|
CMA
|
A:GS0801
|
4.6
|
32.5
|
1.0
|
CBD
|
A:GS0801
|
4.7
|
32.5
|
1.0
|
CG
|
A:HIS621
|
4.7
|
28.0
|
1.0
|
ND1
|
A:HIS621
|
4.7
|
28.0
|
1.0
|
CBB
|
a:GS0801
|
4.8
|
32.5
|
1.0
|
CE1
|
A:PHE600
|
4.8
|
20.2
|
1.0
|
NB
|
a:GS0801
|
4.9
|
32.5
|
1.0
|
CD1
|
A:PHE600
|
4.9
|
20.2
|
1.0
|
|
Magnesium binding site 2 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 2 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg802
b:35.3
occ:1.00
|
MG
|
A:CLA802
|
0.0
|
35.3
|
1.0
|
NZ
|
A:LYS553
|
1.9
|
23.5
|
1.0
|
NB
|
A:CLA802
|
2.0
|
35.3
|
1.0
|
ND
|
A:CLA802
|
2.0
|
35.3
|
1.0
|
NA
|
A:CLA802
|
2.1
|
35.3
|
1.0
|
NC
|
A:CLA802
|
2.1
|
35.3
|
1.0
|
C4D
|
A:CLA802
|
2.9
|
35.3
|
1.0
|
C1B
|
A:CLA802
|
3.0
|
35.3
|
1.0
|
C4A
|
A:CLA802
|
3.0
|
35.3
|
1.0
|
C4B
|
A:CLA802
|
3.1
|
35.3
|
1.0
|
C1C
|
A:CLA802
|
3.1
|
35.3
|
1.0
|
C4C
|
A:CLA802
|
3.1
|
35.3
|
1.0
|
CE
|
A:LYS553
|
3.2
|
23.5
|
1.0
|
C1A
|
A:CLA802
|
3.2
|
35.3
|
1.0
|
C1D
|
A:CLA802
|
3.2
|
35.3
|
1.0
|
CZ
|
a:PHE625
|
3.2
|
22.7
|
1.0
|
CE1
|
a:PHE625
|
3.3
|
22.7
|
1.0
|
CHB
|
A:CLA802
|
3.4
|
35.3
|
1.0
|
CHC
|
A:CLA802
|
3.4
|
35.3
|
1.0
|
CHA
|
A:CLA802
|
3.5
|
35.3
|
1.0
|
CHD
|
A:CLA802
|
3.5
|
35.3
|
1.0
|
CE2
|
a:PHE625
|
3.6
|
22.7
|
1.0
|
CD
|
A:LYS553
|
3.8
|
23.5
|
1.0
|
CD1
|
a:PHE625
|
3.9
|
22.7
|
1.0
|
CD2
|
a:PHE625
|
4.1
|
22.7
|
1.0
|
C3D
|
A:CLA802
|
4.3
|
35.3
|
1.0
|
CG
|
a:PHE625
|
4.3
|
22.7
|
1.0
|
C2B
|
A:CLA802
|
4.3
|
35.3
|
1.0
|
C3B
|
A:CLA802
|
4.3
|
35.3
|
1.0
|
C2C
|
A:CLA802
|
4.3
|
35.3
|
1.0
|
C2D
|
A:CLA802
|
4.4
|
35.3
|
1.0
|
C3C
|
A:CLA802
|
4.4
|
35.3
|
1.0
|
C3A
|
A:CLA802
|
4.4
|
35.3
|
1.0
|
C2A
|
A:CLA802
|
4.5
|
35.3
|
1.0
|
CBD
|
A:CLA802
|
4.9
|
35.3
|
1.0
|
CG
|
A:LYS553
|
5.0
|
23.5
|
1.0
|
|
Magnesium binding site 3 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 3 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg803
b:35.3
occ:1.00
|
MG
|
A:CLA803
|
0.0
|
35.3
|
1.0
|
NB
|
A:CLA803
|
2.0
|
35.3
|
1.0
|
ND
|
A:CLA803
|
2.0
|
35.3
|
1.0
|
NC
|
A:CLA803
|
2.1
|
35.3
|
1.0
|
NA
|
A:CLA803
|
2.1
|
35.3
|
1.0
|
O
|
A:HOH902
|
2.1
|
30.0
|
1.0
|
C4D
|
A:CLA803
|
3.0
|
35.3
|
1.0
|
C1B
|
A:CLA803
|
3.0
|
35.3
|
1.0
|
C4A
|
A:CLA803
|
3.0
|
35.3
|
1.0
|
C4B
|
A:CLA803
|
3.1
|
35.3
|
1.0
|
C1C
|
A:CLA803
|
3.1
|
35.3
|
1.0
|
C1D
|
A:CLA803
|
3.1
|
35.3
|
1.0
|
C4C
|
A:CLA803
|
3.1
|
35.3
|
1.0
|
C1A
|
A:CLA803
|
3.1
|
35.3
|
1.0
|
CHB
|
A:CLA803
|
3.4
|
35.3
|
1.0
|
CHC
|
A:CLA803
|
3.4
|
35.3
|
1.0
|
CHA
|
A:CLA803
|
3.5
|
35.3
|
1.0
|
CHD
|
A:CLA803
|
3.5
|
35.3
|
1.0
|
C3D
|
A:CLA803
|
4.3
|
35.3
|
1.0
|
CZ
|
a:PHE495
|
4.3
|
17.6
|
1.0
|
C2B
|
A:CLA803
|
4.3
|
35.3
|
1.0
|
C3B
|
A:CLA803
|
4.3
|
35.3
|
1.0
|
C2C
|
A:CLA803
|
4.3
|
35.3
|
1.0
|
C2D
|
A:CLA803
|
4.4
|
35.3
|
1.0
|
C3C
|
A:CLA803
|
4.4
|
35.3
|
1.0
|
C3A
|
A:CLA803
|
4.4
|
35.3
|
1.0
|
C2A
|
A:CLA803
|
4.5
|
35.3
|
1.0
|
NE1
|
a:TRP550
|
4.5
|
21.6
|
1.0
|
CZ2
|
a:TRP550
|
4.6
|
21.6
|
1.0
|
CE2
|
a:TRP550
|
4.7
|
21.6
|
1.0
|
CE1
|
a:PHE495
|
4.8
|
17.6
|
1.0
|
CB
|
A:ALA629
|
4.9
|
17.4
|
1.0
|
CBD
|
A:CLA803
|
4.9
|
35.3
|
1.0
|
|
Magnesium binding site 4 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 4 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg804
b:35.3
occ:1.00
|
MG
|
A:BCL804
|
0.0
|
35.3
|
1.0
|
NE2
|
A:HIS79
|
1.8
|
24.3
|
1.0
|
ND
|
A:BCL804
|
2.0
|
35.3
|
1.0
|
NB
|
A:BCL804
|
2.1
|
35.3
|
1.0
|
NC
|
A:BCL804
|
2.1
|
35.3
|
1.0
|
NA
|
A:BCL804
|
2.2
|
35.3
|
1.0
|
CE1
|
A:HIS79
|
2.4
|
24.3
|
1.0
|
C4D
|
A:BCL804
|
3.0
|
35.3
|
1.0
|
CD2
|
A:HIS79
|
3.0
|
24.3
|
1.0
|
C1B
|
A:BCL804
|
3.1
|
35.3
|
1.0
|
C4B
|
A:BCL804
|
3.1
|
35.3
|
1.0
|
C1C
|
A:BCL804
|
3.1
|
35.3
|
1.0
|
C4A
|
A:BCL804
|
3.2
|
35.3
|
1.0
|
C1D
|
A:BCL804
|
3.2
|
35.3
|
1.0
|
C4C
|
A:BCL804
|
3.2
|
35.3
|
1.0
|
C1A
|
A:BCL804
|
3.2
|
35.3
|
1.0
|
CHC
|
A:BCL804
|
3.4
|
35.3
|
1.0
|
CHB
|
A:BCL804
|
3.4
|
35.3
|
1.0
|
CHA
|
A:BCL804
|
3.5
|
35.3
|
1.0
|
CHD
|
A:BCL804
|
3.5
|
35.3
|
1.0
|
ND1
|
A:HIS79
|
3.7
|
24.3
|
1.0
|
CG
|
A:HIS79
|
3.9
|
24.3
|
1.0
|
C3D
|
A:BCL804
|
4.3
|
35.3
|
1.0
|
C2B
|
A:BCL804
|
4.3
|
35.3
|
1.0
|
C2D
|
A:BCL804
|
4.3
|
35.3
|
1.0
|
C3B
|
A:BCL804
|
4.4
|
35.3
|
1.0
|
C2C
|
A:BCL804
|
4.4
|
35.3
|
1.0
|
C3C
|
A:BCL804
|
4.5
|
35.3
|
1.0
|
C3A
|
A:BCL804
|
4.5
|
35.3
|
1.0
|
C2A
|
A:BCL804
|
4.5
|
35.3
|
1.0
|
CMB
|
A:BCL813
|
4.6
|
21.2
|
1.0
|
CE1
|
A:PHE279
|
4.8
|
21.0
|
1.0
|
CD1
|
A:PHE279
|
4.9
|
21.0
|
1.0
|
CBD
|
A:BCL804
|
5.0
|
35.3
|
1.0
|
|
Magnesium binding site 5 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 5 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg805
b:18.7
occ:1.00
|
MG
|
A:BCL805
|
0.0
|
18.7
|
1.0
|
O
|
A:HOH901
|
1.9
|
15.6
|
1.0
|
ND
|
A:BCL805
|
2.0
|
18.7
|
1.0
|
NB
|
A:BCL805
|
2.1
|
18.7
|
1.0
|
NC
|
A:BCL805
|
2.1
|
18.7
|
1.0
|
NA
|
A:BCL805
|
2.2
|
18.7
|
1.0
|
C4D
|
A:BCL805
|
3.0
|
18.7
|
1.0
|
C4B
|
A:BCL805
|
3.1
|
18.7
|
1.0
|
C1B
|
A:BCL805
|
3.1
|
18.7
|
1.0
|
C1D
|
A:BCL805
|
3.1
|
18.7
|
1.0
|
C1C
|
A:BCL805
|
3.1
|
18.7
|
1.0
|
C4A
|
A:BCL805
|
3.1
|
18.7
|
1.0
|
C4C
|
A:BCL805
|
3.2
|
18.7
|
1.0
|
C1A
|
A:BCL805
|
3.2
|
18.7
|
1.0
|
CHC
|
A:BCL805
|
3.3
|
18.7
|
1.0
|
CHA
|
A:BCL805
|
3.4
|
18.7
|
1.0
|
CHB
|
A:BCL805
|
3.4
|
18.7
|
1.0
|
CHD
|
A:BCL805
|
3.5
|
18.7
|
1.0
|
CG2
|
A:THR284
|
4.0
|
17.7
|
1.0
|
OG1
|
A:THR284
|
4.0
|
17.7
|
1.0
|
C3D
|
A:BCL805
|
4.2
|
18.7
|
1.0
|
CB
|
A:THR284
|
4.2
|
17.7
|
1.0
|
C2B
|
A:BCL805
|
4.3
|
18.7
|
1.0
|
C3B
|
A:BCL805
|
4.3
|
18.7
|
1.0
|
C3A
|
A:BCL805
|
4.3
|
18.7
|
1.0
|
C2D
|
A:BCL805
|
4.4
|
18.7
|
1.0
|
C2A
|
A:BCL805
|
4.4
|
18.7
|
1.0
|
C2C
|
A:BCL805
|
4.4
|
18.7
|
1.0
|
C3C
|
A:BCL805
|
4.5
|
18.7
|
1.0
|
CMA
|
A:BCL805
|
4.7
|
18.7
|
1.0
|
CG2
|
A:VAL281
|
4.9
|
15.8
|
1.0
|
CBD
|
A:BCL805
|
4.9
|
18.7
|
1.0
|
|
Magnesium binding site 6 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 6 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg806
b:20.9
occ:1.00
|
MG
|
A:BCL806
|
0.0
|
20.9
|
1.0
|
NE2
|
A:HIS150
|
1.9
|
19.5
|
1.0
|
ND
|
A:BCL806
|
2.0
|
20.9
|
1.0
|
NB
|
A:BCL806
|
2.1
|
20.9
|
1.0
|
NC
|
A:BCL806
|
2.1
|
20.9
|
1.0
|
NA
|
A:BCL806
|
2.2
|
20.9
|
1.0
|
CE1
|
A:HIS150
|
2.8
|
19.5
|
1.0
|
CD2
|
A:HIS150
|
3.0
|
19.5
|
1.0
|
C4D
|
A:BCL806
|
3.0
|
20.9
|
1.0
|
C1B
|
A:BCL806
|
3.1
|
20.9
|
1.0
|
C4B
|
A:BCL806
|
3.1
|
20.9
|
1.0
|
C1C
|
A:BCL806
|
3.1
|
20.9
|
1.0
|
C4A
|
A:BCL806
|
3.1
|
20.9
|
1.0
|
C1D
|
A:BCL806
|
3.2
|
20.9
|
1.0
|
C4C
|
A:BCL806
|
3.2
|
20.9
|
1.0
|
C1A
|
A:BCL806
|
3.2
|
20.9
|
1.0
|
CHB
|
A:BCL806
|
3.4
|
20.9
|
1.0
|
CHC
|
A:BCL806
|
3.4
|
20.9
|
1.0
|
CHA
|
A:BCL806
|
3.5
|
20.9
|
1.0
|
CHD
|
A:BCL806
|
3.5
|
20.9
|
1.0
|
ND1
|
A:HIS150
|
3.9
|
19.5
|
1.0
|
CG
|
A:HIS150
|
4.1
|
19.5
|
1.0
|
C15
|
A:BCL810
|
4.2
|
24.0
|
1.0
|
C3D
|
A:BCL806
|
4.2
|
20.9
|
1.0
|
C2B
|
A:BCL806
|
4.3
|
20.9
|
1.0
|
C2D
|
A:BCL806
|
4.3
|
20.9
|
1.0
|
C3B
|
A:BCL806
|
4.3
|
20.9
|
1.0
|
C2C
|
A:BCL806
|
4.4
|
20.9
|
1.0
|
C3A
|
A:BCL806
|
4.4
|
20.9
|
1.0
|
C3C
|
A:BCL806
|
4.5
|
20.9
|
1.0
|
C16
|
A:BCL810
|
4.5
|
24.0
|
1.0
|
C2A
|
A:BCL806
|
4.5
|
20.9
|
1.0
|
OH
|
A:TYR94
|
4.7
|
20.6
|
1.0
|
CBD
|
A:BCL806
|
5.0
|
20.9
|
1.0
|
|
Magnesium binding site 7 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 7 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg807
b:35.2
occ:1.00
|
MG
|
A:BCL807
|
0.0
|
35.2
|
1.0
|
NE2
|
A:HIS164
|
1.6
|
33.0
|
1.0
|
ND
|
A:BCL807
|
2.0
|
35.2
|
1.0
|
NB
|
A:BCL807
|
2.1
|
35.2
|
1.0
|
NC
|
A:BCL807
|
2.2
|
35.2
|
1.0
|
NA
|
A:BCL807
|
2.2
|
35.2
|
1.0
|
CE1
|
A:HIS164
|
2.5
|
33.0
|
1.0
|
CD2
|
A:HIS164
|
2.7
|
33.0
|
1.0
|
C4D
|
A:BCL807
|
3.0
|
35.2
|
1.0
|
C4B
|
A:BCL807
|
3.1
|
35.2
|
1.0
|
C1B
|
A:BCL807
|
3.1
|
35.2
|
1.0
|
C1C
|
A:BCL807
|
3.1
|
35.2
|
1.0
|
C4A
|
A:BCL807
|
3.2
|
35.2
|
1.0
|
C1D
|
A:BCL807
|
3.2
|
35.2
|
1.0
|
C4C
|
A:BCL807
|
3.2
|
35.2
|
1.0
|
C1A
|
A:BCL807
|
3.3
|
35.2
|
1.0
|
CHC
|
A:BCL807
|
3.4
|
35.2
|
1.0
|
CHB
|
A:BCL807
|
3.4
|
35.2
|
1.0
|
CHA
|
A:BCL807
|
3.5
|
35.2
|
1.0
|
CHD
|
A:BCL807
|
3.5
|
35.2
|
1.0
|
ND1
|
A:HIS164
|
3.7
|
33.0
|
1.0
|
CG
|
A:HIS164
|
3.8
|
33.0
|
1.0
|
C3D
|
A:BCL807
|
4.2
|
35.2
|
1.0
|
C2B
|
A:BCL807
|
4.3
|
35.2
|
1.0
|
C3B
|
A:BCL807
|
4.3
|
35.2
|
1.0
|
C2D
|
A:BCL807
|
4.3
|
35.2
|
1.0
|
C2C
|
A:BCL807
|
4.4
|
35.2
|
1.0
|
C11
|
A:BCL807
|
4.4
|
35.2
|
1.0
|
C3A
|
A:BCL807
|
4.4
|
35.2
|
1.0
|
C3C
|
A:BCL807
|
4.5
|
35.2
|
1.0
|
C2A
|
A:BCL807
|
4.6
|
35.2
|
1.0
|
CD1
|
A:LEU80
|
4.8
|
21.1
|
1.0
|
O
|
A:GLY160
|
4.8
|
28.5
|
1.0
|
CBD
|
A:BCL807
|
4.9
|
35.2
|
1.0
|
|
Magnesium binding site 8 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 8 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg808
b:26.3
occ:1.00
|
MG
|
A:BCL808
|
0.0
|
26.3
|
1.0
|
NE2
|
A:HIS209
|
1.5
|
20.9
|
1.0
|
ND
|
A:BCL808
|
2.0
|
26.3
|
1.0
|
NB
|
A:BCL808
|
2.1
|
26.3
|
1.0
|
NC
|
A:BCL808
|
2.1
|
26.3
|
1.0
|
NA
|
A:BCL808
|
2.2
|
26.3
|
1.0
|
CE1
|
A:HIS209
|
2.5
|
20.9
|
1.0
|
CD2
|
A:HIS209
|
2.6
|
20.9
|
1.0
|
C4D
|
A:BCL808
|
3.0
|
26.3
|
1.0
|
C4B
|
A:BCL808
|
3.1
|
26.3
|
1.0
|
C1B
|
A:BCL808
|
3.1
|
26.3
|
1.0
|
C1C
|
A:BCL808
|
3.1
|
26.3
|
1.0
|
C4A
|
A:BCL808
|
3.1
|
26.3
|
1.0
|
C1D
|
A:BCL808
|
3.1
|
26.3
|
1.0
|
C4C
|
A:BCL808
|
3.2
|
26.3
|
1.0
|
C1A
|
A:BCL808
|
3.2
|
26.3
|
1.0
|
CHC
|
A:BCL808
|
3.4
|
26.3
|
1.0
|
CHB
|
A:BCL808
|
3.4
|
26.3
|
1.0
|
CHA
|
A:BCL808
|
3.5
|
26.3
|
1.0
|
CHD
|
A:BCL808
|
3.5
|
26.3
|
1.0
|
ND1
|
A:HIS209
|
3.5
|
20.9
|
1.0
|
CG
|
A:HIS209
|
3.6
|
20.9
|
1.0
|
CBB
|
A:BCL807
|
3.7
|
35.2
|
1.0
|
C3D
|
A:BCL808
|
4.2
|
26.3
|
1.0
|
C2B
|
A:BCL808
|
4.3
|
26.3
|
1.0
|
C2D
|
A:BCL808
|
4.3
|
26.3
|
1.0
|
C3B
|
A:BCL808
|
4.3
|
26.3
|
1.0
|
CB
|
A:ALA205
|
4.4
|
24.0
|
1.0
|
C2C
|
A:BCL808
|
4.4
|
26.3
|
1.0
|
C3C
|
A:BCL808
|
4.4
|
26.3
|
1.0
|
C3A
|
A:BCL808
|
4.4
|
26.3
|
1.0
|
C2A
|
A:BCL808
|
4.4
|
26.3
|
1.0
|
CAB
|
A:BCL807
|
4.8
|
35.2
|
1.0
|
OBB
|
A:BCL807
|
4.9
|
35.2
|
1.0
|
CBD
|
A:BCL808
|
4.9
|
26.3
|
1.0
|
CAA
|
A:BCL808
|
4.9
|
26.3
|
1.0
|
|
Magnesium binding site 9 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 9 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg809
b:21.3
occ:1.00
|
MG
|
A:BCL809
|
0.0
|
21.3
|
1.0
|
ND
|
A:BCL809
|
2.0
|
21.3
|
1.0
|
NB
|
A:BCL809
|
2.1
|
21.3
|
1.0
|
OE2
|
A:GLU242
|
2.1
|
22.4
|
1.0
|
NC
|
A:BCL809
|
2.1
|
21.3
|
1.0
|
NA
|
A:BCL809
|
2.2
|
21.3
|
1.0
|
C4D
|
A:BCL809
|
3.0
|
21.3
|
1.0
|
CD
|
A:GLU242
|
3.0
|
22.4
|
1.0
|
C4B
|
A:BCL809
|
3.1
|
21.3
|
1.0
|
C1B
|
A:BCL809
|
3.1
|
21.3
|
1.0
|
C1C
|
A:BCL809
|
3.1
|
21.3
|
1.0
|
C4A
|
A:BCL809
|
3.1
|
21.3
|
1.0
|
C1D
|
A:BCL809
|
3.2
|
21.3
|
1.0
|
C4C
|
A:BCL809
|
3.2
|
21.3
|
1.0
|
C1A
|
A:BCL809
|
3.2
|
21.3
|
1.0
|
CG
|
A:GLU242
|
3.4
|
22.4
|
1.0
|
CHC
|
A:BCL809
|
3.4
|
21.3
|
1.0
|
CHB
|
A:BCL809
|
3.4
|
21.3
|
1.0
|
CHA
|
A:BCL809
|
3.4
|
21.3
|
1.0
|
CHD
|
A:BCL809
|
3.5
|
21.3
|
1.0
|
NH2
|
A:ARG120
|
4.0
|
21.4
|
1.0
|
C26
|
A:F39816
|
4.0
|
20.1
|
1.0
|
CB
|
A:GLU242
|
4.1
|
22.4
|
1.0
|
OE1
|
A:GLU242
|
4.2
|
22.4
|
1.0
|
C3D
|
A:BCL809
|
4.2
|
21.3
|
1.0
|
C2B
|
A:BCL809
|
4.3
|
21.3
|
1.0
|
C2D
|
A:BCL809
|
4.3
|
21.3
|
1.0
|
C3B
|
A:BCL809
|
4.3
|
21.3
|
1.0
|
C3A
|
A:BCL809
|
4.4
|
21.3
|
1.0
|
C2C
|
A:BCL809
|
4.4
|
21.3
|
1.0
|
C23
|
A:F39816
|
4.5
|
20.1
|
1.0
|
C3C
|
A:BCL809
|
4.5
|
21.3
|
1.0
|
C2A
|
A:BCL809
|
4.5
|
21.3
|
1.0
|
CZ
|
A:ARG120
|
4.8
|
21.4
|
1.0
|
CBD
|
A:BCL809
|
4.9
|
21.3
|
1.0
|
C24
|
A:F39816
|
4.9
|
20.1
|
1.0
|
NH1
|
A:ARG120
|
4.9
|
21.4
|
1.0
|
CMA
|
A:BCL809
|
5.0
|
21.3
|
1.0
|
|
Magnesium binding site 10 out
of 78 in 7z6q
Go back to
Magnesium Binding Sites List in 7z6q
Magnesium binding site 10 out
of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg810
b:24.0
occ:1.00
|
MG
|
A:BCL810
|
0.0
|
24.0
|
1.0
|
ND
|
A:BCL810
|
2.0
|
24.0
|
1.0
|
NE2
|
A:HIS282
|
2.0
|
18.8
|
1.0
|
NB
|
A:BCL810
|
2.1
|
24.0
|
1.0
|
NC
|
A:BCL810
|
2.2
|
24.0
|
1.0
|
NA
|
A:BCL810
|
2.2
|
24.0
|
1.0
|
CD2
|
A:HIS282
|
2.7
|
18.8
|
1.0
|
C4D
|
A:BCL810
|
3.0
|
24.0
|
1.0
|
C1B
|
A:BCL810
|
3.1
|
24.0
|
1.0
|
C4B
|
A:BCL810
|
3.1
|
24.0
|
1.0
|
C1D
|
A:BCL810
|
3.1
|
24.0
|
1.0
|
C1C
|
A:BCL810
|
3.1
|
24.0
|
1.0
|
C4A
|
A:BCL810
|
3.1
|
24.0
|
1.0
|
C4C
|
A:BCL810
|
3.2
|
24.0
|
1.0
|
CE1
|
A:HIS282
|
3.2
|
18.8
|
1.0
|
C1A
|
A:BCL810
|
3.2
|
24.0
|
1.0
|
CHB
|
A:BCL810
|
3.4
|
24.0
|
1.0
|
CHC
|
A:BCL810
|
3.4
|
24.0
|
1.0
|
CHA
|
A:BCL810
|
3.5
|
24.0
|
1.0
|
CHD
|
A:BCL810
|
3.5
|
24.0
|
1.0
|
CG
|
A:HIS282
|
4.0
|
18.8
|
1.0
|
ND1
|
A:HIS282
|
4.2
|
18.8
|
1.0
|
C3D
|
A:BCL810
|
4.2
|
24.0
|
1.0
|
C2B
|
A:BCL810
|
4.3
|
24.0
|
1.0
|
C2D
|
A:BCL810
|
4.3
|
24.0
|
1.0
|
C3B
|
A:BCL810
|
4.3
|
24.0
|
1.0
|
C2C
|
A:BCL810
|
4.5
|
24.0
|
1.0
|
C3A
|
A:BCL810
|
4.5
|
24.0
|
1.0
|
C3C
|
A:BCL810
|
4.5
|
24.0
|
1.0
|
C2A
|
A:BCL810
|
4.5
|
24.0
|
1.0
|
CBD
|
A:BCL810
|
4.9
|
24.0
|
1.0
|
|
Reference:
H.Xie,
A.Lyratzakis,
R.Khera,
M.Koutantou,
S.Welsch,
H.Michel,
G.Tsiotis.
Cryo-Em Structure of the Whole Photosynthetic Reaction Center Apparatus From the Green Sulfur Bacterium Chlorobaculum Tepidum. Proc.Natl.Acad.Sci.Usa V. 120 34120 2023.
ISSN: ESSN 1091-6490
PubMed: 36693097
DOI: 10.1073/PNAS.2216734120
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