Magnesium in PDB 7z6q: Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria

The structure of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Iron	(Fe)	12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 78;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria (pdb code 7z6q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 78 binding sites of Magnesium where determined in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria, PDB code: 7z6q:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:32.5 occ:1.00 MG A:GS0801 0.0 32.5 1.0 NA A:GS0801 1.9 32.5 1.0 ND A:GS0801 1.9 32.5 1.0 NB A:GS0801 1.9 32.5 1.0 NC A:GS0801 2.2 32.5 1.0 NE2 A:HIS621 2.6 28.0 1.0 C4D A:GS0801 2.8 32.5 1.0 C1B A:GS0801 2.8 32.5 1.0 C4A A:GS0801 2.9 32.5 1.0 OBB a:GS0801 2.9 32.5 1.0 C1A A:GS0801 3.0 32.5 1.0 C4B A:GS0801 3.0 32.5 1.0 C1D A:GS0801 3.1 32.5 1.0 C1C A:GS0801 3.1 32.5 1.0 CHB A:GS0801 3.2 32.5 1.0 C4C A:GS0801 3.2 32.5 1.0 CHA A:GS0801 3.2 32.5 1.0 CHC A:GS0801 3.5 32.5 1.0 CD2 A:HIS621 3.5 28.0 1.0 CHD A:GS0801 3.6 32.5 1.0 CE1 A:HIS621 3.6 28.0 1.0 CAB a:GS0801 3.6 32.5 1.0 C3B a:GS0801 3.9 32.5 1.0 C3D A:GS0801 4.0 32.5 1.0 C2B A:GS0801 4.0 32.5 1.0 C3B A:GS0801 4.1 32.5 1.0 C3A A:GS0801 4.2 32.5 1.0 C4B a:GS0801 4.2 32.5 1.0 C2D A:GS0801 4.2 32.5 1.0 C2A A:GS0801 4.3 32.5 1.0 CHC a:GS0801 4.4 32.5 1.0 C2C A:GS0801 4.5 32.5 1.0 C2B a:GS0801 4.6 32.5 1.0 C3C A:GS0801 4.6 32.5 1.0 CMA A:GS0801 4.6 32.5 1.0 CBD A:GS0801 4.7 32.5 1.0 CG A:HIS621 4.7 28.0 1.0 ND1 A:HIS621 4.7 28.0 1.0 CBB a:GS0801 4.8 32.5 1.0 CE1 A:PHE600 4.8 20.2 1.0 NB a:GS0801 4.9 32.5 1.0 CD1 A:PHE600 4.9 20.2 1.0

Magnesium binding site 2 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:35.3 occ:1.00 MG A:CLA802 0.0 35.3 1.0 NZ A:LYS553 1.9 23.5 1.0 NB A:CLA802 2.0 35.3 1.0 ND A:CLA802 2.0 35.3 1.0 NA A:CLA802 2.1 35.3 1.0 NC A:CLA802 2.1 35.3 1.0 C4D A:CLA802 2.9 35.3 1.0 C1B A:CLA802 3.0 35.3 1.0 C4A A:CLA802 3.0 35.3 1.0 C4B A:CLA802 3.1 35.3 1.0 C1C A:CLA802 3.1 35.3 1.0 C4C A:CLA802 3.1 35.3 1.0 CE A:LYS553 3.2 23.5 1.0 C1A A:CLA802 3.2 35.3 1.0 C1D A:CLA802 3.2 35.3 1.0 CZ a:PHE625 3.2 22.7 1.0 CE1 a:PHE625 3.3 22.7 1.0 CHB A:CLA802 3.4 35.3 1.0 CHC A:CLA802 3.4 35.3 1.0 CHA A:CLA802 3.5 35.3 1.0 CHD A:CLA802 3.5 35.3 1.0 CE2 a:PHE625 3.6 22.7 1.0 CD A:LYS553 3.8 23.5 1.0 CD1 a:PHE625 3.9 22.7 1.0 CD2 a:PHE625 4.1 22.7 1.0 C3D A:CLA802 4.3 35.3 1.0 CG a:PHE625 4.3 22.7 1.0 C2B A:CLA802 4.3 35.3 1.0 C3B A:CLA802 4.3 35.3 1.0 C2C A:CLA802 4.3 35.3 1.0 C2D A:CLA802 4.4 35.3 1.0 C3C A:CLA802 4.4 35.3 1.0 C3A A:CLA802 4.4 35.3 1.0 C2A A:CLA802 4.5 35.3 1.0 CBD A:CLA802 4.9 35.3 1.0 CG A:LYS553 5.0 23.5 1.0

Magnesium binding site 3 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:35.3 occ:1.00 MG A:CLA803 0.0 35.3 1.0 NB A:CLA803 2.0 35.3 1.0 ND A:CLA803 2.0 35.3 1.0 NC A:CLA803 2.1 35.3 1.0 NA A:CLA803 2.1 35.3 1.0 O A:HOH902 2.1 30.0 1.0 C4D A:CLA803 3.0 35.3 1.0 C1B A:CLA803 3.0 35.3 1.0 C4A A:CLA803 3.0 35.3 1.0 C4B A:CLA803 3.1 35.3 1.0 C1C A:CLA803 3.1 35.3 1.0 C1D A:CLA803 3.1 35.3 1.0 C4C A:CLA803 3.1 35.3 1.0 C1A A:CLA803 3.1 35.3 1.0 CHB A:CLA803 3.4 35.3 1.0 CHC A:CLA803 3.4 35.3 1.0 CHA A:CLA803 3.5 35.3 1.0 CHD A:CLA803 3.5 35.3 1.0 C3D A:CLA803 4.3 35.3 1.0 CZ a:PHE495 4.3 17.6 1.0 C2B A:CLA803 4.3 35.3 1.0 C3B A:CLA803 4.3 35.3 1.0 C2C A:CLA803 4.3 35.3 1.0 C2D A:CLA803 4.4 35.3 1.0 C3C A:CLA803 4.4 35.3 1.0 C3A A:CLA803 4.4 35.3 1.0 C2A A:CLA803 4.5 35.3 1.0 NE1 a:TRP550 4.5 21.6 1.0 CZ2 a:TRP550 4.6 21.6 1.0 CE2 a:TRP550 4.7 21.6 1.0 CE1 a:PHE495 4.8 17.6 1.0 CB A:ALA629 4.9 17.4 1.0 CBD A:CLA803 4.9 35.3 1.0

Magnesium binding site 4 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:35.3 occ:1.00 MG A:BCL804 0.0 35.3 1.0 NE2 A:HIS79 1.8 24.3 1.0 ND A:BCL804 2.0 35.3 1.0 NB A:BCL804 2.1 35.3 1.0 NC A:BCL804 2.1 35.3 1.0 NA A:BCL804 2.2 35.3 1.0 CE1 A:HIS79 2.4 24.3 1.0 C4D A:BCL804 3.0 35.3 1.0 CD2 A:HIS79 3.0 24.3 1.0 C1B A:BCL804 3.1 35.3 1.0 C4B A:BCL804 3.1 35.3 1.0 C1C A:BCL804 3.1 35.3 1.0 C4A A:BCL804 3.2 35.3 1.0 C1D A:BCL804 3.2 35.3 1.0 C4C A:BCL804 3.2 35.3 1.0 C1A A:BCL804 3.2 35.3 1.0 CHC A:BCL804 3.4 35.3 1.0 CHB A:BCL804 3.4 35.3 1.0 CHA A:BCL804 3.5 35.3 1.0 CHD A:BCL804 3.5 35.3 1.0 ND1 A:HIS79 3.7 24.3 1.0 CG A:HIS79 3.9 24.3 1.0 C3D A:BCL804 4.3 35.3 1.0 C2B A:BCL804 4.3 35.3 1.0 C2D A:BCL804 4.3 35.3 1.0 C3B A:BCL804 4.4 35.3 1.0 C2C A:BCL804 4.4 35.3 1.0 C3C A:BCL804 4.5 35.3 1.0 C3A A:BCL804 4.5 35.3 1.0 C2A A:BCL804 4.5 35.3 1.0 CMB A:BCL813 4.6 21.2 1.0 CE1 A:PHE279 4.8 21.0 1.0 CD1 A:PHE279 4.9 21.0 1.0 CBD A:BCL804 5.0 35.3 1.0

Magnesium binding site 5 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:18.7 occ:1.00 MG A:BCL805 0.0 18.7 1.0 O A:HOH901 1.9 15.6 1.0 ND A:BCL805 2.0 18.7 1.0 NB A:BCL805 2.1 18.7 1.0 NC A:BCL805 2.1 18.7 1.0 NA A:BCL805 2.2 18.7 1.0 C4D A:BCL805 3.0 18.7 1.0 C4B A:BCL805 3.1 18.7 1.0 C1B A:BCL805 3.1 18.7 1.0 C1D A:BCL805 3.1 18.7 1.0 C1C A:BCL805 3.1 18.7 1.0 C4A A:BCL805 3.1 18.7 1.0 C4C A:BCL805 3.2 18.7 1.0 C1A A:BCL805 3.2 18.7 1.0 CHC A:BCL805 3.3 18.7 1.0 CHA A:BCL805 3.4 18.7 1.0 CHB A:BCL805 3.4 18.7 1.0 CHD A:BCL805 3.5 18.7 1.0 CG2 A:THR284 4.0 17.7 1.0 OG1 A:THR284 4.0 17.7 1.0 C3D A:BCL805 4.2 18.7 1.0 CB A:THR284 4.2 17.7 1.0 C2B A:BCL805 4.3 18.7 1.0 C3B A:BCL805 4.3 18.7 1.0 C3A A:BCL805 4.3 18.7 1.0 C2D A:BCL805 4.4 18.7 1.0 C2A A:BCL805 4.4 18.7 1.0 C2C A:BCL805 4.4 18.7 1.0 C3C A:BCL805 4.5 18.7 1.0 CMA A:BCL805 4.7 18.7 1.0 CG2 A:VAL281 4.9 15.8 1.0 CBD A:BCL805 4.9 18.7 1.0

Magnesium binding site 6 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:20.9 occ:1.00 MG A:BCL806 0.0 20.9 1.0 NE2 A:HIS150 1.9 19.5 1.0 ND A:BCL806 2.0 20.9 1.0 NB A:BCL806 2.1 20.9 1.0 NC A:BCL806 2.1 20.9 1.0 NA A:BCL806 2.2 20.9 1.0 CE1 A:HIS150 2.8 19.5 1.0 CD2 A:HIS150 3.0 19.5 1.0 C4D A:BCL806 3.0 20.9 1.0 C1B A:BCL806 3.1 20.9 1.0 C4B A:BCL806 3.1 20.9 1.0 C1C A:BCL806 3.1 20.9 1.0 C4A A:BCL806 3.1 20.9 1.0 C1D A:BCL806 3.2 20.9 1.0 C4C A:BCL806 3.2 20.9 1.0 C1A A:BCL806 3.2 20.9 1.0 CHB A:BCL806 3.4 20.9 1.0 CHC A:BCL806 3.4 20.9 1.0 CHA A:BCL806 3.5 20.9 1.0 CHD A:BCL806 3.5 20.9 1.0 ND1 A:HIS150 3.9 19.5 1.0 CG A:HIS150 4.1 19.5 1.0 C15 A:BCL810 4.2 24.0 1.0 C3D A:BCL806 4.2 20.9 1.0 C2B A:BCL806 4.3 20.9 1.0 C2D A:BCL806 4.3 20.9 1.0 C3B A:BCL806 4.3 20.9 1.0 C2C A:BCL806 4.4 20.9 1.0 C3A A:BCL806 4.4 20.9 1.0 C3C A:BCL806 4.5 20.9 1.0 C16 A:BCL810 4.5 24.0 1.0 C2A A:BCL806 4.5 20.9 1.0 OH A:TYR94 4.7 20.6 1.0 CBD A:BCL806 5.0 20.9 1.0

Magnesium binding site 7 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:35.2 occ:1.00 MG A:BCL807 0.0 35.2 1.0 NE2 A:HIS164 1.6 33.0 1.0 ND A:BCL807 2.0 35.2 1.0 NB A:BCL807 2.1 35.2 1.0 NC A:BCL807 2.2 35.2 1.0 NA A:BCL807 2.2 35.2 1.0 CE1 A:HIS164 2.5 33.0 1.0 CD2 A:HIS164 2.7 33.0 1.0 C4D A:BCL807 3.0 35.2 1.0 C4B A:BCL807 3.1 35.2 1.0 C1B A:BCL807 3.1 35.2 1.0 C1C A:BCL807 3.1 35.2 1.0 C4A A:BCL807 3.2 35.2 1.0 C1D A:BCL807 3.2 35.2 1.0 C4C A:BCL807 3.2 35.2 1.0 C1A A:BCL807 3.3 35.2 1.0 CHC A:BCL807 3.4 35.2 1.0 CHB A:BCL807 3.4 35.2 1.0 CHA A:BCL807 3.5 35.2 1.0 CHD A:BCL807 3.5 35.2 1.0 ND1 A:HIS164 3.7 33.0 1.0 CG A:HIS164 3.8 33.0 1.0 C3D A:BCL807 4.2 35.2 1.0 C2B A:BCL807 4.3 35.2 1.0 C3B A:BCL807 4.3 35.2 1.0 C2D A:BCL807 4.3 35.2 1.0 C2C A:BCL807 4.4 35.2 1.0 C11 A:BCL807 4.4 35.2 1.0 C3A A:BCL807 4.4 35.2 1.0 C3C A:BCL807 4.5 35.2 1.0 C2A A:BCL807 4.6 35.2 1.0 CD1 A:LEU80 4.8 21.1 1.0 O A:GLY160 4.8 28.5 1.0 CBD A:BCL807 4.9 35.2 1.0

Magnesium binding site 8 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:26.3 occ:1.00 MG A:BCL808 0.0 26.3 1.0 NE2 A:HIS209 1.5 20.9 1.0 ND A:BCL808 2.0 26.3 1.0 NB A:BCL808 2.1 26.3 1.0 NC A:BCL808 2.1 26.3 1.0 NA A:BCL808 2.2 26.3 1.0 CE1 A:HIS209 2.5 20.9 1.0 CD2 A:HIS209 2.6 20.9 1.0 C4D A:BCL808 3.0 26.3 1.0 C4B A:BCL808 3.1 26.3 1.0 C1B A:BCL808 3.1 26.3 1.0 C1C A:BCL808 3.1 26.3 1.0 C4A A:BCL808 3.1 26.3 1.0 C1D A:BCL808 3.1 26.3 1.0 C4C A:BCL808 3.2 26.3 1.0 C1A A:BCL808 3.2 26.3 1.0 CHC A:BCL808 3.4 26.3 1.0 CHB A:BCL808 3.4 26.3 1.0 CHA A:BCL808 3.5 26.3 1.0 CHD A:BCL808 3.5 26.3 1.0 ND1 A:HIS209 3.5 20.9 1.0 CG A:HIS209 3.6 20.9 1.0 CBB A:BCL807 3.7 35.2 1.0 C3D A:BCL808 4.2 26.3 1.0 C2B A:BCL808 4.3 26.3 1.0 C2D A:BCL808 4.3 26.3 1.0 C3B A:BCL808 4.3 26.3 1.0 CB A:ALA205 4.4 24.0 1.0 C2C A:BCL808 4.4 26.3 1.0 C3C A:BCL808 4.4 26.3 1.0 C3A A:BCL808 4.4 26.3 1.0 C2A A:BCL808 4.4 26.3 1.0 CAB A:BCL807 4.8 35.2 1.0 OBB A:BCL807 4.9 35.2 1.0 CBD A:BCL808 4.9 26.3 1.0 CAA A:BCL808 4.9 26.3 1.0

Magnesium binding site 9 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:21.3 occ:1.00 MG A:BCL809 0.0 21.3 1.0 ND A:BCL809 2.0 21.3 1.0 NB A:BCL809 2.1 21.3 1.0 OE2 A:GLU242 2.1 22.4 1.0 NC A:BCL809 2.1 21.3 1.0 NA A:BCL809 2.2 21.3 1.0 C4D A:BCL809 3.0 21.3 1.0 CD A:GLU242 3.0 22.4 1.0 C4B A:BCL809 3.1 21.3 1.0 C1B A:BCL809 3.1 21.3 1.0 C1C A:BCL809 3.1 21.3 1.0 C4A A:BCL809 3.1 21.3 1.0 C1D A:BCL809 3.2 21.3 1.0 C4C A:BCL809 3.2 21.3 1.0 C1A A:BCL809 3.2 21.3 1.0 CG A:GLU242 3.4 22.4 1.0 CHC A:BCL809 3.4 21.3 1.0 CHB A:BCL809 3.4 21.3 1.0 CHA A:BCL809 3.4 21.3 1.0 CHD A:BCL809 3.5 21.3 1.0 NH2 A:ARG120 4.0 21.4 1.0 C26 A:F39816 4.0 20.1 1.0 CB A:GLU242 4.1 22.4 1.0 OE1 A:GLU242 4.2 22.4 1.0 C3D A:BCL809 4.2 21.3 1.0 C2B A:BCL809 4.3 21.3 1.0 C2D A:BCL809 4.3 21.3 1.0 C3B A:BCL809 4.3 21.3 1.0 C3A A:BCL809 4.4 21.3 1.0 C2C A:BCL809 4.4 21.3 1.0 C23 A:F39816 4.5 20.1 1.0 C3C A:BCL809 4.5 21.3 1.0 C2A A:BCL809 4.5 21.3 1.0 CZ A:ARG120 4.8 21.4 1.0 CBD A:BCL809 4.9 21.3 1.0 C24 A:F39816 4.9 20.1 1.0 NH1 A:ARG120 4.9 21.4 1.0 CMA A:BCL809 5.0 21.3 1.0

Magnesium binding site 10 out of 78 in the Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of the Whole Photosynthetic Complex From the Green Sulfur Bacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:24.0 occ:1.00 MG A:BCL810 0.0 24.0 1.0 ND A:BCL810 2.0 24.0 1.0 NE2 A:HIS282 2.0 18.8 1.0 NB A:BCL810 2.1 24.0 1.0 NC A:BCL810 2.2 24.0 1.0 NA A:BCL810 2.2 24.0 1.0 CD2 A:HIS282 2.7 18.8 1.0 C4D A:BCL810 3.0 24.0 1.0 C1B A:BCL810 3.1 24.0 1.0 C4B A:BCL810 3.1 24.0 1.0 C1D A:BCL810 3.1 24.0 1.0 C1C A:BCL810 3.1 24.0 1.0 C4A A:BCL810 3.1 24.0 1.0 C4C A:BCL810 3.2 24.0 1.0 CE1 A:HIS282 3.2 18.8 1.0 C1A A:BCL810 3.2 24.0 1.0 CHB A:BCL810 3.4 24.0 1.0 CHC A:BCL810 3.4 24.0 1.0 CHA A:BCL810 3.5 24.0 1.0 CHD A:BCL810 3.5 24.0 1.0 CG A:HIS282 4.0 18.8 1.0 ND1 A:HIS282 4.2 18.8 1.0 C3D A:BCL810 4.2 24.0 1.0 C2B A:BCL810 4.3 24.0 1.0 C2D A:BCL810 4.3 24.0 1.0 C3B A:BCL810 4.3 24.0 1.0 C2C A:BCL810 4.5 24.0 1.0 C3A A:BCL810 4.5 24.0 1.0 C3C A:BCL810 4.5 24.0 1.0 C2A A:BCL810 4.5 24.0 1.0 CBD A:BCL810 4.9 24.0 1.0

H.Xie, A.Lyratzakis, R.Khera, M.Koutantou, S.Welsch, H.Michel, G.Tsiotis. Cryo-Em Structure of the Whole Photosynthetic Reaction Center Apparatus From the Green Sulfur Bacterium Chlorobaculum Tepidum. Proc.Natl.Acad.Sci.Usa V. 120 34120 2023.
ISSN: ESSN 1091-6490
PubMed: 36693097
DOI: 10.1073/PNAS.2216734120