Magnesium in PDB 7z7h: Structure of P. Luminescens TCCC3-F-Actin Complex
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of P. Luminescens TCCC3-F-Actin Complex
(pdb code 7z7h). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Structure of P. Luminescens TCCC3-F-Actin Complex, PDB code: 7z7h:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 7z7h
Go back to
Magnesium Binding Sites List in 7z7h
Magnesium binding site 1 out
of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:137.4
occ:1.00
|
O1B
|
D:ADP401
|
1.8
|
133.5
|
1.0
|
O1A
|
D:ADP401
|
1.9
|
133.5
|
1.0
|
O3A
|
D:ADP401
|
2.0
|
133.5
|
1.0
|
PA
|
D:ADP401
|
2.3
|
133.5
|
1.0
|
PB
|
D:ADP401
|
2.4
|
133.5
|
1.0
|
O2A
|
D:ADP401
|
3.1
|
133.5
|
1.0
|
O3B
|
D:ADP401
|
3.2
|
133.5
|
1.0
|
O2B
|
D:ADP401
|
3.6
|
133.5
|
1.0
|
O5'
|
D:ADP401
|
3.7
|
133.5
|
1.0
|
CA
|
D:GLY156
|
4.1
|
122.6
|
1.0
|
NZ
|
D:LYS18
|
4.3
|
114.0
|
1.0
|
N
|
D:ASP157
|
4.3
|
133.2
|
1.0
|
C5'
|
D:ADP401
|
4.6
|
133.5
|
1.0
|
C
|
D:GLY156
|
4.8
|
122.6
|
1.0
|
CA
|
D:GLY301
|
5.0
|
121.8
|
1.0
|
N
|
D:GLY302
|
5.0
|
124.5
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 7z7h
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Magnesium Binding Sites List in 7z7h
Magnesium binding site 2 out
of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:127.9
occ:1.00
|
O1B
|
B:ADP401
|
1.8
|
131.0
|
1.0
|
O3A
|
B:ADP401
|
1.9
|
131.0
|
1.0
|
O1A
|
B:ADP401
|
2.0
|
131.0
|
1.0
|
PB
|
B:ADP401
|
2.3
|
131.0
|
1.0
|
PA
|
B:ADP401
|
2.3
|
131.0
|
1.0
|
O3B
|
B:ADP401
|
3.0
|
131.0
|
1.0
|
O2A
|
B:ADP401
|
3.2
|
131.0
|
1.0
|
O2B
|
B:ADP401
|
3.6
|
131.0
|
1.0
|
O5'
|
B:ADP401
|
3.6
|
131.0
|
1.0
|
NZ
|
B:LYS18
|
3.7
|
123.0
|
1.0
|
CA
|
B:GLY156
|
4.4
|
123.7
|
1.0
|
C5'
|
B:ADP401
|
4.5
|
131.0
|
1.0
|
N
|
B:ASP157
|
4.8
|
133.1
|
1.0
|
CE
|
B:LYS18
|
5.0
|
123.0
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 7z7h
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Magnesium Binding Sites List in 7z7h
Magnesium binding site 3 out
of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg402
b:118.2
occ:1.00
|
O3B
|
E:ADP401
|
2.0
|
154.9
|
1.0
|
O1B
|
E:ADP401
|
2.0
|
154.9
|
1.0
|
PB
|
E:ADP401
|
2.2
|
154.9
|
1.0
|
O3A
|
E:ADP401
|
2.7
|
154.9
|
1.0
|
O2B
|
E:ADP401
|
3.7
|
154.9
|
1.0
|
O1A
|
E:ADP401
|
3.8
|
154.9
|
1.0
|
PA
|
E:ADP401
|
3.9
|
154.9
|
1.0
|
CA
|
E:GLY156
|
4.3
|
153.5
|
1.0
|
NZ
|
E:LYS18
|
4.4
|
164.0
|
1.0
|
O2A
|
E:ADP401
|
4.6
|
154.9
|
1.0
|
OD2
|
E:ASP154
|
4.8
|
145.0
|
1.0
|
N
|
E:ASP157
|
4.9
|
162.4
|
1.0
|
O5'
|
E:ADP401
|
4.9
|
154.9
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 7z7h
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Magnesium Binding Sites List in 7z7h
Magnesium binding site 4 out
of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:116.2
occ:1.00
|
O1B
|
C:ADP401
|
2.0
|
126.5
|
1.0
|
O3B
|
C:ADP401
|
2.0
|
126.5
|
1.0
|
PB
|
C:ADP401
|
2.2
|
126.5
|
1.0
|
O3A
|
C:ADP401
|
2.7
|
126.5
|
1.0
|
O2B
|
C:ADP401
|
3.7
|
126.5
|
1.0
|
O1A
|
C:ADP401
|
3.8
|
126.5
|
1.0
|
PA
|
C:ADP401
|
3.8
|
126.5
|
1.0
|
CA
|
C:GLY156
|
4.1
|
122.7
|
1.0
|
NZ
|
C:LYS18
|
4.5
|
132.5
|
1.0
|
O2A
|
C:ADP401
|
4.5
|
126.5
|
1.0
|
N
|
C:ASP157
|
4.7
|
126.8
|
1.0
|
CA
|
C:GLY13
|
4.8
|
120.6
|
1.0
|
C
|
C:GLY156
|
5.0
|
122.7
|
1.0
|
O5'
|
C:ADP401
|
5.0
|
126.5
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 7z7h
Go back to
Magnesium Binding Sites List in 7z7h
Magnesium binding site 5 out
of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:164.1
occ:1.00
|
O1B
|
A:ADP401
|
2.0
|
166.4
|
1.0
|
O3B
|
A:ADP401
|
2.1
|
166.4
|
1.0
|
PB
|
A:ADP401
|
2.2
|
166.4
|
1.0
|
O3A
|
A:ADP401
|
2.7
|
166.4
|
1.0
|
O2B
|
A:ADP401
|
3.7
|
166.4
|
1.0
|
O1A
|
A:ADP401
|
3.8
|
166.4
|
1.0
|
CA
|
A:GLY156
|
3.8
|
175.9
|
1.0
|
PA
|
A:ADP401
|
3.8
|
166.4
|
1.0
|
OD2
|
A:ASP154
|
4.3
|
177.5
|
1.0
|
N
|
A:GLY156
|
4.4
|
175.9
|
1.0
|
O2A
|
A:ADP401
|
4.6
|
166.4
|
1.0
|
OD1
|
A:ASP154
|
4.7
|
177.5
|
1.0
|
N
|
A:ASP157
|
4.7
|
175.2
|
1.0
|
C
|
A:GLY156
|
4.7
|
175.9
|
1.0
|
O5'
|
A:ADP401
|
4.9
|
166.4
|
1.0
|
CG
|
A:ASP154
|
4.9
|
177.5
|
1.0
|
NZ
|
A:LYS18
|
5.0
|
149.1
|
1.0
|
CA
|
A:GLY13
|
5.0
|
161.4
|
1.0
|
|
Reference:
A.Belyy,
F.Lindemann,
D.Roderer,
J.Funk,
B.Bardiaux,
J.Protze,
P.Bieling,
H.Oschkinat,
S.Raunser.
Mechanism of Threonine Adp-Ribosylation of F-Actin By A Tc Toxin. Nat Commun V. 13 4202 2022.
ISSN: ESSN 2041-1723
PubMed: 35858890
DOI: 10.1038/S41467-022-31836-W
Page generated: Thu Oct 3 16:17:03 2024
|