Magnesium in PDB 7z8d: Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV)

The structure of Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV), PDB code: 7z8d was solved by A.G.Gabdulkhakov, G.K.Selikhanov, S.Guenther, T.Petrova, A.Meents, T.Y.Fufina, L.G.Vasilieva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.05 / 2.14
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	102.5, 102.5, 237.4, 90, 90, 90
R / Rfree (%)	17.9 / 21.3

The structure of Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV) also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Magnesium atom in the Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV) (pdb code 7z8d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV), PDB code: 7z8d:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV) within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg301 b:29.5 occ:1.00 MG L:BCL301 0.0 29.5 1.0 ND L:BCL301 2.0 36.9 1.0 NB L:BCL301 2.1 32.7 1.0 NE2 L:HIS173 2.1 31.5 1.0 NC L:BCL301 2.2 36.3 1.0 NA L:BCL301 2.2 29.1 1.0 CE1 L:HIS173 2.9 31.9 1.0 C4D L:BCL301 3.0 38.1 1.0 C4B L:BCL301 3.1 29.3 1.0 C1B L:BCL301 3.1 33.3 1.0 C1C L:BCL301 3.1 38.7 1.0 C4A L:BCL301 3.2 30.4 1.0 C1D L:BCL301 3.2 34.3 1.0 C4C L:BCL301 3.2 33.8 1.0 C1A L:BCL301 3.3 35.1 1.0 CD2 L:HIS173 3.3 26.1 1.0 CHC L:BCL301 3.4 33.6 1.0 CHB L:BCL301 3.4 31.9 1.0 CHA L:BCL301 3.5 34.7 1.0 CHD L:BCL301 3.5 30.0 1.0 CBB M:BCL406 3.7 34.2 1.0 CAB M:BCL406 3.8 35.7 1.0 OBB M:BCL406 3.9 38.4 1.0 ND1 L:HIS173 4.1 30.3 1.0 C3D L:BCL301 4.3 44.3 1.0 C2B L:BCL301 4.3 37.4 1.0 CG L:HIS173 4.3 34.0 1.0 C2D L:BCL301 4.3 42.0 1.0 C3B L:BCL301 4.4 32.3 1.0 C2C L:BCL301 4.5 35.5 1.0 C3A L:BCL301 4.5 29.7 1.0 C3C L:BCL301 4.5 28.5 1.0 C2A L:BCL301 4.6 28.3 1.0 C3B M:BCL406 4.6 33.9 1.0 CD2 L:PHE167 4.8 39.9 1.0 CBD L:BCL301 5.0 31.9 1.0

Magnesium binding site 2 out of 4 in the Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV) within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg302 b:33.8 occ:1.00 MG L:BCL302 0.0 33.8 1.0 ND L:BCL302 2.0 33.9 1.0 NB L:BCL302 2.1 29.3 1.0 NC L:BCL302 2.1 29.8 1.0 NA L:BCL302 2.2 29.3 1.0 NE2 L:HIS153 2.2 41.5 1.0 C4D L:BCL302 3.0 26.6 1.0 C4B L:BCL302 3.1 29.8 1.0 C1B L:BCL302 3.1 28.7 1.0 C1C L:BCL302 3.1 27.6 1.0 CD2 L:HIS153 3.1 38.5 1.0 C4A L:BCL302 3.1 28.5 1.0 C1D L:BCL302 3.2 33.8 1.0 C4C L:BCL302 3.2 30.3 1.0 C1A L:BCL302 3.2 27.9 1.0 CE1 L:HIS153 3.2 40.6 1.0 CHC L:BCL302 3.4 30.6 1.0 CHB L:BCL302 3.4 32.6 1.0 CHA L:BCL302 3.5 29.8 1.0 CHD L:BCL302 3.5 30.1 1.0 C3D L:BCL302 4.2 32.7 1.0 CG L:HIS153 4.3 39.2 1.0 C2B L:BCL302 4.3 35.3 1.0 C2D L:BCL302 4.3 28.6 1.0 ND1 L:HIS153 4.3 41.1 1.0 C3B L:BCL302 4.3 34.7 1.0 C2C L:BCL302 4.4 30.2 1.0 CBB L:BPH303 4.4 27.5 1.0 C3C L:BCL302 4.4 25.9 1.0 C3A L:BCL302 4.5 22.7 1.0 C2A L:BCL302 4.5 34.1 1.0 CE2 M:TYR210 4.9 26.4 1.0 CBD L:BCL302 4.9 36.6 1.0 CD2 L:LEU154 5.0 40.3 1.0 C19 L:BPH303 5.0 28.4 1.0

Magnesium binding site 3 out of 4 in the Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV) within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg405 b:31.9 occ:1.00 MG M:BCL405 0.0 31.9 1.0 ND M:BCL405 2.0 33.0 1.0 NB M:BCL405 2.1 27.0 1.0 NC M:BCL405 2.1 27.3 1.0 NA M:BCL405 2.2 29.5 1.0 NE2 M:HIS182 2.3 35.8 1.0 C4D M:BCL405 3.0 30.8 1.0 C1B M:BCL405 3.1 29.7 1.0 C4B M:BCL405 3.1 30.9 1.0 C1C M:BCL405 3.1 35.0 1.0 C1D M:BCL405 3.1 28.1 1.0 C4A M:BCL405 3.1 29.3 1.0 C4C M:BCL405 3.2 27.2 1.0 CD2 M:HIS182 3.2 35.5 1.0 C1A M:BCL405 3.2 30.6 1.0 CE1 M:HIS182 3.4 37.7 1.0 CHB M:BCL405 3.4 30.0 1.0 CHC M:BCL405 3.4 34.0 1.0 CHA M:BCL405 3.5 29.5 1.0 CHD M:BCL405 3.5 30.9 1.0 C3D M:BCL405 4.2 31.8 1.0 C2D M:BCL405 4.3 29.3 1.0 C2B M:BCL405 4.3 30.0 1.0 C3B M:BCL405 4.3 34.8 1.0 CG M:HIS182 4.4 41.0 1.0 C2C M:BCL405 4.4 32.9 1.0 ND1 M:HIS182 4.4 41.8 1.0 C3A M:BCL405 4.4 32.3 1.0 C3C M:BCL405 4.5 26.9 1.0 C2A M:BCL405 4.5 35.8 1.0 CBB M:BPH407 4.6 31.6 1.0 CBD M:BCL405 4.9 35.7 1.0

Magnesium binding site 4 out of 4 in the Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV) within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg406 b:30.5 occ:1.00 MG M:BCL406 0.0 30.5 1.0 ND M:BCL406 2.0 31.1 1.0 NB M:BCL406 2.1 31.1 1.0 NC M:BCL406 2.1 30.6 1.0 NA M:BCL406 2.2 32.3 1.0 NE2 M:HIS202 2.2 30.6 1.0 C4D M:BCL406 3.0 32.9 1.0 C4B M:BCL406 3.1 33.8 1.0 CE1 M:HIS202 3.1 29.9 1.0 C1C M:BCL406 3.1 32.7 1.0 C1B M:BCL406 3.1 34.0 1.0 C1D M:BCL406 3.2 37.9 1.0 C4A M:BCL406 3.2 26.6 1.0 C4C M:BCL406 3.2 30.6 1.0 C1A M:BCL406 3.2 30.4 1.0 CD2 M:HIS202 3.3 25.5 1.0 CHC M:BCL406 3.4 30.0 1.0 CHA M:BCL406 3.4 30.6 1.0 CHB M:BCL406 3.4 29.7 1.0 CBB L:BCL301 3.5 35.0 1.0 CHD M:BCL406 3.5 26.4 1.0 CAB L:BCL301 3.9 37.9 1.0 OBB L:BCL301 4.2 35.7 1.0 C3D M:BCL406 4.2 38.7 1.0 ND1 M:HIS202 4.3 29.1 1.0 C2B M:BCL406 4.3 31.9 1.0 C2D M:BCL406 4.3 41.7 1.0 C3B M:BCL406 4.3 33.9 1.0 CG M:HIS202 4.4 25.0 1.0 C2C M:BCL406 4.4 28.9 1.0 C3C M:BCL406 4.5 28.8 1.0 C3A M:BCL406 4.5 28.8 1.0 C2A M:BCL406 4.5 29.5 1.0 C3B L:BCL301 4.6 32.3 1.0 CBD M:BCL406 4.9 29.6 1.0 CMC M:BCL406 4.9 25.0 1.0 CD1 M:ILE206 4.9 30.2 1.0

A.G.Gabdulkhakov, G.K.Selikhanov, S.Guenther, A.Meents, T.Y.Fufina, L.G.Vasilieva. Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv By Fixed-Target Serial Synchrotron Crystallography (Room Temperature, 26KEV) To Be Published.