Magnesium in PDB 7z8h: Cytoplasmic Dynein-1 Motor Domain AAA1, AAA2, and AAA3 Subunits

The binding sites of Magnesium atom in the Cytoplasmic Dynein-1 Motor Domain AAA1, AAA2, and AAA3 Subunits (pdb code 7z8h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cytoplasmic Dynein-1 Motor Domain AAA1, AAA2, and AAA3 Subunits, PDB code: 7z8h:

Magnesium binding site 1 out of 1 in the Cytoplasmic Dynein-1 Motor Domain AAA1, AAA2, and AAA3 Subunits


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cytoplasmic Dynein-1 Motor Domain AAA1, AAA2, and AAA3 Subunits within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4704 b:8.4 occ:1.00 NH2 A:ARG2726 1.9 35.3 1.0 OE1 A:GLU2344 2.3 29.8 1.0 O1B A:ATP4702 2.3 43.9 1.0 O3G A:ATP4702 2.4 37.5 1.0 OG A:SER2231 2.6 27.5 1.0 CB A:SER2231 3.0 28.4 1.0 CZ A:ARG2726 3.2 34.9 1.0 CD A:GLU2344 3.5 40.0 1.0 PB A:ATP4702 3.5 25.6 1.0 PG A:ATP4702 3.7 57.2 1.0 O3B A:ATP4702 3.8 24.4 1.0 NH1 A:ARG2726 3.8 34.8 1.0 N A:SER2231 4.0 10.8 1.0 OE2 A:GLU2344 4.0 45.7 1.0 CG A:LYS2230 4.1 22.9 1.0 CA A:SER2231 4.1 19.4 1.0 NE A:ARG2726 4.2 30.7 1.0 OD2 A:ASP2304 4.3 45.3 1.0 OD1 A:ASP2304 4.3 42.8 1.0 O3A A:ATP4702 4.5 19.3 1.0 CD A:LYS2230 4.6 21.6 1.0 CG A:ASP2304 4.6 46.7 1.0 CG A:GLU2344 4.6 34.9 1.0 O2G A:ATP4702 4.6 46.6 1.0 O2B A:ATP4702 4.6 36.4 1.0 CB A:GLU2344 4.7 30.1 1.0 O1G A:ATP4702 4.7 34.1 1.0 O2A A:ATP4702 4.7 31.6 1.0 O1A A:ATP4702 4.8 35.5 1.0 OE2 A:GLU2688 4.8 37.6 1.0 PA A:ATP4702 4.9 20.6 1.0 CE A:LYS2230 5.0 15.1 1.0

S.Chaaban, A.P.Carter. Structure of Dynein-Dynactin on Microtubules Shows Tandem Adaptor Binding. Nature V. 610 212 2022.
ISSN: ESSN 1476-4687
PubMed: 36071160
DOI: 10.1038/S41586-022-05186-Y