Magnesium in PDB 7z9g: E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-2

All present enzymatic activity of E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-2:
5.6.2.2;

The binding sites of Magnesium atom in the E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-2 (pdb code 7z9g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-2, PDB code: 7z9g:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg901 b:33.6 occ:1.00 O B:HOH1001 1.9 36.3 1.0 O C:HOH1001 1.9 27.0 1.0 O B:HOH1003 1.9 24.6 1.0 O B:HOH1002 1.9 29.8 1.0 O B:HOH1004 2.0 26.8 1.0 OD2 B:ASP500 2.1 20.2 1.0 CG B:ASP500 3.2 20.2 1.0 OD1 B:ASP500 3.8 20.2 1.0 OD2 B:ASP498 3.9 21.3 1.0 H5' E:DT14 3.9 29.8 1.0 HB2 B:ASP502 4.1 21.2 1.0 H32 C:IM0901 4.1 29.8 1.0 OD2 B:ASP502 4.4 21.2 1.0 CB B:ASP500 4.5 20.2 1.0 OP1 E:DT14 4.5 29.8 1.0 HB3 B:ASP500 4.6 20.2 1.0 CG B:ASP498 4.6 21.3 1.0 HB3 B:ASP498 4.6 21.3 1.0 HB2 B:ASP500 4.6 20.2 1.0 C5' E:DT14 4.9 29.8 1.0 N2 C:IM0901 4.9 29.8 1.0 O B:LYS740 5.0 31.4 1.0 CB B:ASP502 5.0 21.2 1.0 HB2 B:ASP498 5.0 21.3 1.0 CB B:ASP498 5.0 21.3 1.0

Magnesium binding site 2 out of 2 in the E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg901 b:38.9 occ:1.00 O D:HOH1001 1.9 40.1 1.0 O D:HOH1003 2.0 25.6 1.0 O D:HOH1002 2.0 25.2 1.0 O F:HOH101 2.0 24.3 1.0 OD2 D:ASP500 2.0 17.1 1.0 O D:HOH1004 2.0 33.3 1.0 CG D:ASP500 3.2 17.1 1.0 OD1 D:ASP500 3.7 17.1 1.0 H5' F:DA14 3.8 29.8 1.0 OD2 D:ASP498 3.9 16.5 1.0 HB2 D:ASP502 4.2 18.0 1.0 OD2 D:ASP502 4.4 18.0 1.0 CB D:ASP500 4.4 17.1 1.0 OP1 F:DA14 4.4 29.8 1.0 HB3 D:ASP500 4.5 17.1 1.0 CG D:ASP498 4.5 16.5 1.0 HB2 D:ASP500 4.5 17.1 1.0 HB3 D:ASP498 4.7 16.5 1.0 O D:LYS740 4.7 19.2 1.0 C5' F:DA14 4.8 29.8 1.0

E.Michalczyk, K.Hommernick, I.Behroz, M.Kulike, Z.Pakosz-Stepien, L.Mazurek, M.Seidel, M.Kunert, K.Santos, H.Von Moeller, B.Loll, J.B.Weston, A.Mainz, J.G.Heddle, R.D.Sussmuth, D.Ghilarov. Molecular Mechanism of Topoisomerase Poisoning By the Peptide Antibiotic Albicidin. Nat Catal V. 6 52 2023.
ISSN: ESSN 2520-1158
PubMed: 36741192
DOI: 10.1038/S41929-022-00904-1