Magnesium in PDB 7z9k: E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-1 (Site Tg)

All present enzymatic activity of E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-1 (Site Tg):
5.6.2.2;

The binding sites of Magnesium atom in the E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-1 (Site Tg) (pdb code 7z9k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-1 (Site Tg), PDB code: 7z9k:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-1 (Site Tg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-1 (Site Tg) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg901 b:35.8 occ:1.00 OD2 B:ASP500 2.0 36.6 1.0 CG B:ASP500 3.2 36.6 1.0 OD2 B:ASP498 3.6 35.4 1.0 OD1 B:ASP500 3.8 36.6 1.0 H5' E:DT14 3.9 49.0 1.0 N4 A:IL1901 4.2 38.5 1.0 HB2 B:ASP502 4.3 37.4 1.0 OP1 E:DT14 4.3 49.0 1.0 CG B:ASP498 4.3 35.4 1.0 CB B:ASP500 4.3 36.6 1.0 HB3 B:ASP500 4.4 36.6 1.0 OD2 B:ASP502 4.5 37.4 1.0 HB2 B:ASP500 4.5 36.6 1.0 HB3 B:ASP498 4.6 35.4 1.0 O B:LYS740 4.8 39.5 1.0 N3 A:IL1901 4.8 38.5 1.0 C5' E:DT14 4.8 49.0 1.0 CB B:ASP498 5.0 35.4 1.0 OD1 B:ASP498 5.0 35.4 1.0

Magnesium binding site 2 out of 2 in the E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-1 (Site Tg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of E.Coli Gyrase Holocomplex with 217 Bp Dna and Albi-1 (Site Tg) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg901 b:38.1 occ:1.00 OD2 D:ASP500 2.9 36.2 1.0 H5' F:DA14 3.5 49.0 1.0 OD2 D:ASP498 3.7 31.1 1.0 OP1 F:DA14 3.9 49.0 1.0 CG D:ASP500 4.1 36.2 1.0 C5' F:DA14 4.4 49.0 1.0 OD1 D:ASP500 4.7 36.2 1.0 CG D:ASP498 4.7 31.1 1.0 O D:LYS740 4.7 35.8 1.0 H5'' F:DA14 4.8 49.0 1.0 HG2 D:LYS740 4.8 35.8 1.0 H3' F:DA14 4.8 49.0 1.0 HB2 D:ASP502 4.9 37.3 1.0 O5' F:DA14 5.0 49.0 1.0

E.Michalczyk, K.Hommernick, I.Behroz, M.Kulike, Z.Pakosz-Stepien, L.Mazurek, M.Seidel, M.Kunert, K.Santos, H.Von Moeller, B.Loll, J.B.Weston, A.Mainz, J.G.Heddle, R.D.Sussmuth, D.Ghilarov. Molecular Mechanism of Topoisomerase Poisoning By the Peptide Antibiotic Albicidin. Nat Catal V. 6 52 2023.
ISSN: ESSN 2520-1158
PubMed: 36741192
DOI: 10.1038/S41929-022-00904-1