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Magnesium in PDB 7ze5: Occ(Apo/Return) Conformation of Cyddc Mutant (E500Q.C) in Atp(Cydc) /Amp-Pnp(Cydd) Bound State (Dataset-23)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Occ(Apo/Return) Conformation of Cyddc Mutant (E500Q.C) in Atp(Cydc) /Amp-Pnp(Cydd) Bound State (Dataset-23) (pdb code 7ze5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Occ(Apo/Return) Conformation of Cyddc Mutant (E500Q.C) in Atp(Cydc) /Amp-Pnp(Cydd) Bound State (Dataset-23), PDB code: 7ze5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7ze5

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Magnesium binding site 1 out of 2 in the Occ(Apo/Return) Conformation of Cyddc Mutant (E500Q.C) in Atp(Cydc) /Amp-Pnp(Cydd) Bound State (Dataset-23)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Occ(Apo/Return) Conformation of Cyddc Mutant (E500Q.C) in Atp(Cydc) /Amp-Pnp(Cydd) Bound State (Dataset-23) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:37.6
occ:1.00
OE1 C:GLN421 2.0 39.7 1.0
O1B C:ATP602 2.0 39.2 1.0
OG C:SER380 2.1 39.9 1.0
O3G C:ATP602 2.2 39.2 1.0
CB C:SER380 3.1 39.9 1.0
CD C:GLN421 3.1 39.7 1.0
PB C:ATP602 3.3 39.2 1.0
PG C:ATP602 3.3 39.2 1.0
O3B C:ATP602 3.6 39.2 1.0
NE2 C:GLN421 3.6 39.7 1.0
O2G C:ATP602 3.8 39.2 1.0
O2A C:ATP602 4.1 39.2 1.0
N C:SER380 4.2 39.9 1.0
CA C:SER380 4.2 39.9 1.0
O2B C:ATP602 4.3 39.2 1.0
CG C:GLN421 4.3 39.7 1.0
OD2 C:ASP499 4.3 44.4 1.0
OD1 C:ASP499 4.4 44.4 1.0
CB C:GLN421 4.4 39.7 1.0
O3A C:ATP602 4.4 39.2 1.0
OE1 C:GLN500 4.5 48.1 1.0
CG2 D:VAL488 4.5 36.5 1.0
O1G C:ATP602 4.6 39.2 1.0
N D:VAL488 4.6 36.5 1.0
PA C:ATP602 4.7 39.2 1.0
CB D:SER487 4.7 36.6 1.0
CG C:ASP499 4.8 44.4 1.0
CB D:VAL488 4.9 36.5 1.0
O1A C:ATP602 4.9 39.2 1.0

Magnesium binding site 2 out of 2 in 7ze5

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Magnesium binding site 2 out of 2 in the Occ(Apo/Return) Conformation of Cyddc Mutant (E500Q.C) in Atp(Cydc) /Amp-Pnp(Cydd) Bound State (Dataset-23)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Occ(Apo/Return) Conformation of Cyddc Mutant (E500Q.C) in Atp(Cydc) /Amp-Pnp(Cydd) Bound State (Dataset-23) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:39.7
occ:1.00
OE1 D:GLN430 1.9 41.1 1.0
OG D:SER390 1.9 38.1 1.0
O3G D:ANP602 1.9 42.8 1.0
O2B D:ANP602 1.9 42.8 1.0
CB D:SER390 2.8 38.1 1.0
CD D:GLN430 3.0 41.1 1.0
PG D:ANP602 3.4 42.8 1.0
PB D:ANP602 3.4 42.8 1.0
NE2 D:GLN430 3.7 41.1 1.0
O2A D:ANP602 3.9 42.8 1.0
N3B D:ANP602 4.0 42.8 1.0
CA D:SER390 4.0 38.1 1.0
N D:SER390 4.1 38.1 1.0
O1B D:ANP602 4.2 42.8 1.0
O1G D:ANP602 4.2 42.8 1.0
OD1 D:ASP510 4.2 43.3 1.0
OD2 D:ASP510 4.2 43.3 1.0
CG D:GLN430 4.3 41.1 1.0
CB D:GLN430 4.3 41.1 1.0
O2G D:ANP602 4.4 42.8 1.0
O3A D:ANP602 4.4 42.8 1.0
N C:GLY477 4.4 40.9 1.0
CG D:ASP510 4.6 43.3 1.0
PA D:ANP602 4.7 42.8 1.0
CB C:SER476 4.7 41.8 1.0

Reference:

D.Wu, S.Safarian. Occ(Apo/Return) Conformation of Cyddc Mutant (E500Q.C) in Atp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-23) To Be Published.
Page generated: Thu Oct 3 16:44:10 2024

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