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Magnesium in PDB 7zql: D(Cgcgttaacgcg)2 B-Dodecamer at 3100 Bars (310 Mpa)

Protein crystallography data

The structure of D(Cgcgttaacgcg)2 B-Dodecamer at 3100 Bars (310 Mpa), PDB code: 7zql was solved by T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.92 / 2.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 25.23, 40.66, 65.2, 90, 90, 90
R / Rfree (%) 17.7 / 23.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the D(Cgcgttaacgcg)2 B-Dodecamer at 3100 Bars (310 Mpa) (pdb code 7zql). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the D(Cgcgttaacgcg)2 B-Dodecamer at 3100 Bars (310 Mpa), PDB code: 7zql:

Magnesium binding site 1 out of 1 in 7zql

Go back to Magnesium Binding Sites List in 7zql
Magnesium binding site 1 out of 1 in the D(Cgcgttaacgcg)2 B-Dodecamer at 3100 Bars (310 Mpa)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of D(Cgcgttaacgcg)2 B-Dodecamer at 3100 Bars (310 Mpa) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:28.2
occ:1.00
N7 A:DG2 3.4 22.6 1.0
C5 A:DC1 4.1 19.2 1.0
C6 A:DC1 4.1 21.6 1.0
N4 A:DC3 4.1 15.1 1.0
C8 A:DG2 4.3 22.6 1.0
O6 A:DG2 4.3 17.8 1.0
O6 B:DG22 4.4 16.4 1.0
C5 A:DG2 4.4 18.5 1.0
O B:HOH106 4.4 23.7 1.0
C6 A:DG2 4.7 16.8 1.0
C2' A:DC1 4.8 25.4 1.0
N1 A:DC1 4.8 24.4 1.0
C4 A:DC1 4.8 19.8 1.0

Reference:

T.Prange, N.Colloc'h, A.C.Dhaussy, M.Lecouvey, E.Migianu-Griffoni, E.Girard. Behavior of B- and Z-Dna Crystals Under High Hydrostatic Pressure Crystals 2022.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST12060871
Page generated: Thu Oct 3 17:03:58 2024

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