Atomistry » Magnesium » PDB 7znv-8a0l » 7zqs
Atomistry »
  Magnesium »
    PDB 7znv-8a0l »
      7zqs »

Magnesium in PDB 7zqs: Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer (pdb code 7zqs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer, PDB code: 7zqs:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7zqs

Go back to Magnesium Binding Sites List in 7zqs
Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:81.9
occ:1.00
OP2 A:DG34 2.3 84.1 1.0
OP2 A:DA35 2.3 79.5 1.0
P A:DA35 3.5 79.5 1.0
P A:DG34 3.7 84.1 1.0
OP1 A:DA35 3.9 79.5 1.0
OP2 A:DG36 4.0 85.0 1.0
C2' A:DG33 4.3 98.6 1.0
C3' A:DG34 4.4 84.1 1.0
OP1 A:DG34 4.5 84.1 1.0
C3' A:DG33 4.5 98.6 1.0
O3' A:DG34 4.5 84.1 1.0
O3' A:DG33 4.5 98.6 1.0
C3' A:DA35 4.5 79.5 1.0
O5' A:DA35 4.6 79.5 1.0
O5' A:DG34 4.6 84.1 1.0
N3 A:DT37 4.6 90.5 1.0
C2' A:DG36 4.7 85.0 1.0
C2' A:DA35 4.7 79.5 1.0
C8 A:DG36 4.7 85.0 1.0
O2 A:DT37 4.8 90.5 1.0
C5' A:DG34 5.0 84.1 1.0

Magnesium binding site 2 out of 4 in 7zqs

Go back to Magnesium Binding Sites List in 7zqs
Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg102

b:65.9
occ:1.00
OP2 A:DG28 3.9 99.3 1.0
O6 A:DG17 4.0 87.6 1.0
O6 A:DG18 4.2 79.2 1.0
N7 A:DG17 4.3 87.6 1.0
OP1 A:DG28 4.4 99.3 1.0
OP2 A:DG26 4.7 74.9 1.0
P A:DG28 4.7 99.3 1.0
NH2 B:ARG629 4.7 66.5 1.0
C6 A:DG17 4.8 87.6 1.0
C5 A:DG17 5.0 87.6 1.0

Magnesium binding site 3 out of 4 in 7zqs

Go back to Magnesium Binding Sites List in 7zqs
Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg101

b:82.4
occ:1.00
OP2 C:DG34 2.3 84.1 1.0
OP2 C:DA35 2.3 79.3 1.0
P C:DA35 3.5 79.3 1.0
P C:DG34 3.7 84.1 1.0
OP1 C:DA35 3.9 79.3 1.0
OP2 C:DG36 4.0 85.0 1.0
C2' C:DG33 4.3 99.0 1.0
C3' C:DG34 4.4 84.1 1.0
OP1 C:DG34 4.5 84.1 1.0
C3' C:DG33 4.5 99.0 1.0
O3' C:DG34 4.5 84.1 1.0
C3' C:DA35 4.5 79.3 1.0
O3' C:DG33 4.5 99.0 1.0
O5' C:DA35 4.6 79.3 1.0
O5' C:DG34 4.6 84.1 1.0
N3 C:DT37 4.6 90.7 1.0
C2' C:DG36 4.7 85.0 1.0
C2' C:DA35 4.7 79.3 1.0
C8 C:DG36 4.7 85.0 1.0
O2 C:DT37 4.8 90.7 1.0
C5' C:DG34 5.0 84.1 1.0

Magnesium binding site 4 out of 4 in 7zqs

Go back to Magnesium Binding Sites List in 7zqs
Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Human Transferrin Receptor 1 Bound to Dna Aptamer within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg102

b:66.2
occ:1.00
OP2 C:DG28 3.9 99.9 1.0
O6 C:DG17 4.0 88.2 1.0
O6 C:DG18 4.2 79.5 1.0
N7 C:DG17 4.3 88.2 1.0
OP1 C:DG28 4.4 99.9 1.0
OP2 C:DG26 4.7 74.7 1.0
P C:DG28 4.7 99.9 1.0
NH2 D:ARG629 4.7 67.0 1.0
C6 C:DG17 4.8 88.2 1.0
C5 C:DG17 5.0 88.2 1.0

Reference:

E.L.Cheng, I.I.Cardle, N.Kacherovsky, H.Bansia, T.Wang, Y.Zhou, J.Raman, A.Yen, D.Gutierrez, S.J.Salipante, A.Des Georges, M.C.Jensen, S.H.Pun. Discovery of A Transferrin Receptor 1-Binding Aptamer and Its Application in Cancer Cell Depletion For Adoptive T-Cell Therapy Manufacturing. J.Am.Chem.Soc. V. 144 13851 2022.
ISSN: ESSN 1520-5126
PubMed: 35875870
DOI: 10.1021/JACS.2C05349
Page generated: Thu Oct 3 17:04:21 2024

Last articles

Sr in 1SFC
Sr in 1OQ7
Sr in 1U3E
Sr in 1VC0
Sr in 1F1T
Sr in 1J8G
Sr in 1NVY
Sr in 1TJM
Sr in 1NUV
Sr in 1M6G
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy