Magnesium in PDB 7zr1: Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)

The structure of Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) also contains other interesting chemical elements:

Manganese

(Mn)

4 atoms

The binding sites of Magnesium atom in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) (pdb code 7zr1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure), PDB code: 7zr1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1401 b:169.3 occ:1.00 O2G C:AGS1402 2.0 107.8 1.0 O1B C:AGS1402 2.0 107.8 1.0 OE1 C:GLN159 2.0 182.2 1.0 OG1 C:THR41 2.1 152.1 1.0 CB C:THR41 3.0 152.1 1.0 PB C:AGS1402 3.1 107.8 1.0 CD C:GLN159 3.1 182.2 1.0 PG C:AGS1402 3.3 107.8 1.0 O3A C:AGS1402 3.4 107.8 1.0 O3B C:AGS1402 3.7 107.8 1.0 O D:GLY1205 3.7 205.4 1.0 NE2 C:GLN159 3.7 182.2 1.0 O3G C:AGS1402 3.8 107.8 1.0 N C:THR41 3.9 152.1 1.0 OE2 C:GLU1238 4.0 164.7 1.0 CA C:THR41 4.0 152.1 1.0 CG2 C:THR41 4.0 152.1 1.0 OD2 C:ASP1237 4.2 164.5 1.0 O1A C:AGS1402 4.2 107.8 1.0 CG C:GLN159 4.3 182.2 1.0 PA C:AGS1402 4.3 107.8 1.0 CE C:LYS40 4.4 154.1 1.0 O2B C:AGS1402 4.4 107.8 1.0 CB C:GLN159 4.4 182.2 1.0 NZ C:LYS40 4.7 154.1 1.0 CD C:GLU1238 4.8 164.7 1.0 O2A C:AGS1402 4.9 107.8 1.0 S1G C:AGS1402 4.9 107.8 1.0 C D:GLY1205 4.9 205.4 1.0 CB C:LYS40 4.9 154.1 1.0 C C:LYS40 4.9 154.1 1.0

Magnesium binding site 2 out of 2 in the Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Chaetomium Thermophilum MRE11-RAD50-NBS1 Complex Bound to Atpys (Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1401 b:253.0 occ:1.00 OG1 D:THR41 2.0 248.8 1.0 O2G D:AGS1402 2.1 250.0 1.0 OE1 D:GLN159 2.3 243.1 1.0 O1B D:AGS1402 2.3 250.0 1.0 PG D:AGS1402 2.7 250.0 1.0 O3G D:AGS1402 2.8 250.0 1.0 O3B D:AGS1402 3.1 250.0 1.0 CD D:GLN159 3.1 243.1 1.0 PB D:AGS1402 3.1 250.0 1.0 CB D:THR41 3.3 248.8 1.0 NE2 D:GLN159 3.3 243.1 1.0 O2A D:AGS1402 3.5 250.0 1.0 O3A D:AGS1402 3.6 250.0 1.0 OD1 D:ASP1237 3.9 246.1 1.0 OD2 D:ASP1237 4.0 246.1 1.0 PA D:AGS1402 4.0 250.0 1.0 N D:THR41 4.2 248.8 1.0 CA D:THR41 4.3 248.8 1.0 O1A D:AGS1402 4.3 250.0 1.0 CG2 D:THR41 4.3 248.8 1.0 CG D:ASP1237 4.4 246.1 1.0 CG D:GLN159 4.5 243.1 1.0 O2B D:AGS1402 4.5 250.0 1.0 S1G D:AGS1402 4.6 250.0 1.0 CB D:GLN159 5.0 243.1 1.0

M.Rotheneder, K.Stakyte, E.Van De Logt, J.D.Bartho, K.Lammens, Y.Fan, A.Alt, B.Kessler, C.Jung, W.P.Roos, B.Steigenberger, K.P.Hopfner. Cryo-Em Structure of the MRE11-RAD50-NBS1 Complex Reveals the Molecular Mechanism of Scaffolding Functions. Mol.Cell 2022.
ISSN: ISSN 1097-2765
PubMed: 36577401
DOI: 10.1016/J.MOLCEL.2022.12.003